mRNA_M-pyrifera_M_contig87081.20249.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87081.20249.1
Unique NamemRNA_M-pyrifera_M_contig87081.20249.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: UPI000994E541 (ESF1 homolog n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000994E541)

HSP 1 Score: 145 bits (366), Expect = 1.040e-35
Identity = 86/239 (35.98%), Postives = 125/239 (52.30%), Query Frame = 1
Query:    1 EVTKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDKGDEE----------------VEIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHNDPSHPLSTSSHTAVPKEDEFEKYIAS 669
            E+T RLA+  +DW+ + A +L  LLNSFLP+                        +  + +Y S+FG + +  EE  GPQ L+ +  D E                +E +R+Y+  R+KYYYA+AEFDS +TA  VY  CDG EY  T   LDLRFVP+  A  + P +VCTE+   YEP+HFTTTAL   +V LTW+  +L+R+   Q  ++     +          E++ + Y+AS
Sbjct:  266 EITHRLAICNMDWDRIRAVDLMILLNSFLPSG---------------------GLIRSITIYPSEFGLQRIKEEEISGPQELKIENIDSEDEDXXXXXXEEGSNYHMEKLRQYQLNRLKYYYAVAEFDSAETANKVYTECDGIEYESTATRLDLRFVPEDMAFDQEPKEVCTEIPEKYEPRHFTTTALQQVKVELTWDETNLDRQEFTQKLNSGKLQDID---------ENDLQTYLAS 474          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: A0A026WYT6_OOCBI (ESF1-like protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WYT6_OOCBI)

HSP 1 Score: 141 bits (356), Expect = 2.280e-34
Identity = 88/237 (37.13%), Postives = 124/237 (52.32%), Query Frame = 1
Query:    1 EVTKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDKGDEEVEI----------------VRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELK--SDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHNDPSHPLSTS---SHTAVPKEDE 648
            E+T+RLA+  +DW+ + A +L  LLNSFL                     SS  R+  + +Y S+FG + +  EE  GP  L     DEE EI                +R+Y+  R+KYYYA+AEFDS +TA  VY  CDG EY  T   +DLRF+PD     + P D CTE+   + Y+P+ FTTTAL   +V LTW+  ++ERR   Q  ++     +S S   ++ A P ED+
Sbjct:  271 EITRRLAICNMDWDKIRAVDLMILLNSFL---------------------SSSGRIHSIMIYPSEFGQQRMKEEEINGPVELRNKDIDEEDEINIENDNEESAKRHMEKLRQYQLNRLKYYYAVAEFDSAETANKVYTECDGIEYESTATRVDLRFIPDDMTFDQEPKDTCTEIPEPTKYQPRQFTTTALQQAKVALTWDETNMERREFFQKLNSGKWQDISESDLRTYIASPSEDD 486          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: E2BW94_HARSA (ESF1-like protein n=1 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BW94_HARSA)

HSP 1 Score: 138 bits (348), Expect = 2.730e-33
Identity = 83/236 (35.17%), Postives = 125/236 (52.97%), Query Frame = 1
Query:    1 EVTKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDK--GDEE-----------VEIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHNDPSHPLSTSSHTAVPKEDEFEKYIAS 669
            ++T +LA+  ++W+++ A +L  LLNSFLP+                        L  V +Y S++G + +  EE  GP+ L+ D    D+E           +E +R+Y+  R+KYYYA+AEFDS +TA  VY  CDG EY  T N LDLRF+PD     + P D C E+ + Y+P+ FTTTAL   +V LTW++ D +R+  LQ  ++     +          E +  KY+AS
Sbjct:  268 KITHKLAICNMNWDVIRAVDLMILLNSFLPSG---------------------GFLRSVTIYPSEYGQQRMKEEEISGPKELKDDNINSDDENEDNEEGAQYHMEKLRQYQLNRLKYYYAVAEFDSAETANKVYTECDGIEYESTSNRLDLRFIPDDMTFDQEPKDTCNEIPTKYQPRQFTTTALQQVKVDLTWDDVDPDRQEFLQKANSGKLEDID---------ESDLHKYLAS 473          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: A0A6J0ZK55_9ROSI (pre-rRNA-processing protein esf1 n=2 Tax=Byttnerioideae TaxID=214909 RepID=A0A6J0ZK55_9ROSI)

HSP 1 Score: 137 bits (345), Expect = 5.870e-33
Identity = 80/204 (39.22%), Postives = 115/204 (56.37%), Query Frame = 1
Query:    7 TKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDK-------GDEEV--EIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHN 591
            T+RLAVV +DW  V A +LY +L+SFLP                        ++  V VY S+FG + +  EE  GP GL  D+       GDEE+  E +R YE+ R++YYYA+ E DS  TA  +Y ACDG E+  + N+LDLRF+PDS      P DV TE  ++YE  +F T AL  +++HL+W+  + +R ++L+   N
Sbjct:  189 TRRLAVVNMDWRHVKAVDLYVMLSSFLPKD---------------------GQMMSVAVYPSEFGLQCMKEEESHGPVGLFDDENEENDEVGDEEIDNEKLRAYERSRLRYYYAVVECDSSATADYLYKACDGAEFERSSNVLDLRFIPDSMEFKHSPRDVATEAPANYEGLNFHTQALQQSKIHLSWDEDEPQRGKILKRKFN 371          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: A0A1R3IMR3_COCAP (Embryo sac development arrest n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3IMR3_COCAP)

HSP 1 Score: 135 bits (341), Expect = 1.960e-32
Identity = 78/200 (39.00%), Postives = 111/200 (55.50%), Query Frame = 1
Query:    7 TKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDKGDEEV---------EIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQ 579
            T+RLAVV +DW  V A +LY +L+SFLP                        ++  V VY S+FG + +  EE  GP GL  D+ +E+          E +R YEK R++YYYA+   DS  TA  +Y ACDG E+  + N+LDLRF+PDS     PP DV TE  ++YE   F T AL  +++HLTW+  + +R ++L+
Sbjct:  196 TRRLAVVNMDWRHVKAADLYVMLSSFLPKD---------------------GQIMSVAVYPSEFGLQRMKQEEIHGPVGLFDDENEEDDXXXXDEIDNEKLREYEKSRLRYYYAVVGCDSSATADYLYKACDGVEFERSANVLDLRFIPDSMEFKHPPRDVATEAPANYEGLSFHTQALQQSKIHLTWDEDEPQRGKILK 374          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: UPI0019215796 (LOW QUALITY PROTEIN: ESF1 homolog n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019215796)

HSP 1 Score: 135 bits (341), Expect = 2.010e-32
Identity = 80/205 (39.02%), Postives = 114/205 (55.61%), Query Frame = 1
Query:    7 TKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGL-------EGDKGDEEV--EIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHND 594
            T RLAVV +DW  V A +LY +L+SFLP                        ++ +V VY S+FG + +  EE  GP GL         + GD+E+  E +R YEK R++YYYA+ E DS  TA  +Y  CDG E+  + N+LDLRFVPDS     PP DV  E  ++YE  +F T AL  +++HL+W+  + +R ++L+   ND
Sbjct:  197 TCRLAVVNMDWRHVKAADLYVMLSSFLPKD---------------------GQIIQVAVYPSEFGLQRMKEEEIHGPVGLFNGENEDNDEDGDDEIDNEKLREYEKSRLRYYYAVVECDSSATADYLYKTCDGAEFERSSNVLDLRFVPDSMEFKHPPXDVAVEAPANYEGLNFETQALQQSKIHLSWDEDEPQRGKILKRKLND 380          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: A0A835M994_9MAGN (NUC153 domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M994_9MAGN)

HSP 1 Score: 134 bits (338), Expect = 4.400e-32
Identity = 79/202 (39.11%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    7 TKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGL---------EGDKGDEEVEIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNW 585
            T RLA+V +DW  V A +LY +L+SFLP                        +L  V VY S+FG K +  E  KGP GL         +GD G+ + E +R YE  R++YY+A+AE DS  TA  +Y ACDG E+  + N+LDLRFVPD+    R P DV TE+  +Y    F T AL  + + LTW+  +  R+ L +N+
Sbjct:  112 THRLAIVNMDWSQVRAVDLYVVLSSFLPKG---------------------GQLLSVTVYPSEFGLKRMEEEAVKGPVGLFDSDDEKSDDGDNGEIDKEKLRAYELSRLRYYHAVAECDSSATADHIYKACDGLEFERSSNVLDLRFVPDTMQFERSPRDVATEVPENYNVVDFKTQALQQSNIRLTWDEDEPNRKALRRNF 292          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: A0A0K2U0I1_LEPSM (ESF1 homolog [Nasonia vitripennis] n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2U0I1_LEPSM)

HSP 1 Score: 133 bits (334), Expect = 1.260e-31
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    1 EVTKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDKGDEEVEI-----VRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFA-PPRPPTDVCTELKSD--YEPQHFTTTALGATQVHLTWENGDLERRRLLQ 579
            E T+RLA+  +DW+ +GA++L+  L+SFLP++ S                     L +V +YLSDFGA+   +++  GP+ L  ++  E  E      VR+Y+  R+KYYYA+AEFDS  +A  VY+ CDG E+ L+    DLRF+PD      R P ++C  L  D  YE + F TTAL   +V LTW+  D +R  L+Q
Sbjct:  141 ETTRRLAICNMDWDRIGAKDLFLALSSFLPSSGS---------------------LLKVKLYLSDFGAERSKMDDVMGPEELRANRNKELTEEQMNERVRQYQVNRLKYYYAVAEFDSPDSASRVYEECDGMEFELSACRFDLRFIPDDVEFNEREPKEICDSLPEDEKYEAKEFETTALQKGKVDLTWDETDPKRTALMQ 320          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: A0A061FIM3_THECC (Nucleus isoform 3 n=5 Tax=Theobroma cacao TaxID=3641 RepID=A0A061FIM3_THECC)

HSP 1 Score: 132 bits (331), Expect = 1.760e-31
Identity = 77/204 (37.75%), Postives = 114/204 (55.88%), Query Frame = 1
Query:    7 TKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDK-------GDEEV--EIVRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHN 591
            T+ LA+V +DW  V A +LY +L+SFLP                        ++  V VY S+FG + +  EE  GP GL  D+       GD+E+  E +R YE+ R++YYYA+ E DS  TA  +Y ACDG E+  + N+LDLRF+PDS      P DV TE  ++YE  +F T AL  +++HL+W+  + +R ++L+   N
Sbjct:   14 TRWLAIVNMDWRHVKAVDLYVMLSSFLPKD---------------------GQIMSVAVYPSEFGLRRMKEEEIHGPVGLFDDENEENDEVGDDEIDNEKLRAYERSRLRYYYAVVECDSSATADYLYKACDGAEFERSSNVLDLRFIPDSMEFKHSPRDVATEAPANYEGLNFHTQALQQSKIHLSWDEDEPQRGKILKRKFN 196          
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Match: UPI00062320CC (ESF1 homolog n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI00062320CC)

HSP 1 Score: 132 bits (331), Expect = 5.160e-31
Identity = 79/214 (36.92%), Postives = 112/214 (52.34%), Query Frame = 1
Query:    1 EVTKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPSSSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDKG-DEEVEI------------------VRRYEKRRMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRPPTDVCTELKSD--YEPQHFTTTALGATQVHLTWENGDLERRRLLQ 579
            E+T RLA+  +DW+ + A +L  LLNSFLP+                        +  V +Y S+FG + +  EE  GP  L+ ++  D E +I                  +R+Y+  R+KYYYA+AEFDS KTA  VY  CDG EY  T   LDLRF+PD     + P ++CTE+     Y+P+ FTTTAL   +V LTW+  +L+R+   Q
Sbjct:  264 EITHRLAICNMDWDRIRAVDLMILLNSFLPSG---------------------GLIHSVTIYPSEFGQQRMKEEEVNGPTELKNNENIDNEDDIXXXXXXXXXEGSSYHMEKLRQYQLNRLKYYYAVAEFDSAKTANKVYTECDGIEYESTATKLDLRFIPDDMTFDQEPKEICTEIPEPVKYQPRQFTTTALQQVKVELTWDETNLDRQEFTQ 456          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87081.20249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000994E5411.040e-3535.98ESF1 homolog n=1 Tax=Pseudomyrmex gracilis TaxID=2... [more]
A0A026WYT6_OOCBI2.280e-3437.13ESF1-like protein n=1 Tax=Ooceraea biroi TaxID=201... [more]
E2BW94_HARSA2.730e-3335.17ESF1-like protein n=1 Tax=Harpegnathos saltator Ta... [more]
A0A6J0ZK55_9ROSI5.870e-3339.22pre-rRNA-processing protein esf1 n=2 Tax=Byttnerio... [more]
A0A1R3IMR3_COCAP1.960e-3239.00Embryo sac development arrest n=1 Tax=Corchorus ca... [more]
UPI00192157962.010e-3239.02LOW QUALITY PROTEIN: ESF1 homolog n=1 Tax=Hibiscus... [more]
A0A835M994_9MAGN4.400e-3239.11NUC153 domain-containing protein n=1 Tax=Coptis ch... [more]
A0A0K2U0I1_LEPSM1.260e-3138.81ESF1 homolog [Nasonia vitripennis] n=3 Tax=Lepeoph... [more]
A0A061FIM3_THECC1.760e-3137.75Nucleus isoform 3 n=5 Tax=Theobroma cacao TaxID=36... [more]
UPI00062320CC5.160e-3136.92ESF1 homolog n=1 Tax=Linepithema humile TaxID=8348... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87081contigM-pyrifera_M_contig87081:2..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score135.2
Seed ortholog evalue4.7e-29
Seed eggNOG ortholog71139.XP_010029641.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.Pre-rRNA-processing protein
EggNOG OGs37N9M@33090,3GBYE@35493,COG5638@1,KOG2318@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size837
Cds size837
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.2856019-CDS-M-pyrifera_M_contig87081:1..8381622816780.2856019-CDS-M-pyrifera_M_contig87081:1..838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87081 2..838 +
1692278174.2751353-CDS-M-pyrifera_M_contig87081:1..8381692278174.2751353-CDS-M-pyrifera_M_contig87081:1..838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87081 2..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87081.20249.1prot_M-pyrifera_M_contig87081.20249.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87081 2..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87081.20249.1

>prot_M-pyrifera_M_contig87081.20249.1 ID=prot_M-pyrifera_M_contig87081.20249.1|Name=mRNA_M-pyrifera_M_contig87081.20249.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
EVTKRLAVVGVDWEMVGAQELYALLNSFLPTAPSADDDKPASSSSSSVPS
SSFARLERVGVYLSDFGAKYVHLEEEKGPQGLEGDKGDEEVEIVRRYEKR
RMKYYYAIAEFDSKKTAKAVYDACDGQEYLLTGNILDLRFVPDSFAPPRP
PTDVCTELKSDYEPQHFTTTALGATQVHLTWENGDLERRRLLQNWHNDPS
HPLSTSSHTAVPKEDEFEKYIASSSSSSSSSSSEEEEEVEVEKAGEEEKE
GEKGKGKGKGKGKGKGKAVSEEEKKRRRR
back to top

mRNA from alignment at M-pyrifera_M_contig87081:2..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87081.20249.1 ID=mRNA_M-pyrifera_M_contig87081.20249.1|Name=mRNA_M-pyrifera_M_contig87081.20249.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=837bp|location=Sequence derived from alignment at M-pyrifera_M_contig87081:2..838+ (Macrocystis pyrifera P11B4 male)
GAAGTTACAAAACGTCTTGCTGTTGTTGGTGTAGATTGGGAAATGGTTGG AGCACAAGAATTGTATGCCCTTCTCAATTCTTTTCTTCCCACAGCACCAT CAGCAGACGACGACAAGCCTGCATCCTCTTCTTCCTCCTCCGTACCATCA TCATCCTTTGCTCGTTTGGAGCGTGTTGGTGTGTATTTGTCTGATTTTGG GGCAAAGTATGTGCATTTGGAGGAGGAAAAAGGGCCACAAGGACTTGAAG GGGACAAGGGAGATGAAGAAGTGGAGATTGTGAGGAGGTATGAGAAGCGA AGGATGAAGTATTACTATGCGATTGCAGAATTTGACTCGAAGAAAACTGC AAAAGCTGTGTATGATGCATGTGATGGGCAAGAGTATTTGTTGACTGGCA ATATTCTTGATTTACGCTTTGTACCAGACTCATTCGCACCCCCACGACCA CCAACTGACGTTTGCACTGAACTAAAATCAGACTATGAACCACAACACTT TACAACAACAGCTCTTGGTGCAACACAAGTCCATCTTACATGGGAAAATG GTGATTTGGAAAGGAGAAGATTGTTGCAGAACTGGCACAATGATCCATCC CATCCTCTGTCAACCTCATCTCACACAGCAGTCCCAAAGGAAGATGAGTT CGAAAAGTACATTGCCTCTTCCTCCTCCTCGTCTTCCTCATCATCATCTG AGGAAGAGGAGGAGGTGGAGGTGGAGAAAGCTGGGGAAGAGGAGAAGGAG GGAGAGAAGGGGAAGGGGAAGGGGAAGGGGAAGGGGAAGGGAAAGGGGAA AGCAGTGAGTGAAGAGGAGAAGAAGAGGAGAAGGAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87081:2..838+

>mRNA_M-pyrifera_M_contig87081.20249.1 ID=mRNA_M-pyrifera_M_contig87081.20249.1|Name=mRNA_M-pyrifera_M_contig87081.20249.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig87081:2..838+ (Macrocystis pyrifera P11B4 male)
GAAGTTACAAAACGTCTTGCTGTTGTTGGTGTAGATTGGGAAATGGTTGG
AGCACAAGAATTGTATGCCCTTCTCAATTCTTTTCTTCCCACAGCACCAT
CAGCAGACGACGACAAGCCTGCATCCTCTTCTTCCTCCTCCGTACCATCA
TCATCCTTTGCTCGTTTGGAGCGTGTTGGTGTGTATTTGTCTGATTTTGG
GGCAAAGTATGTGCATTTGGAGGAGGAAAAAGGGCCACAAGGACTTGAAG
GGGACAAGGGAGATGAAGAAGTGGAGATTGTGAGGAGGTATGAGAAGCGA
AGGATGAAGTATTACTATGCGATTGCAGAATTTGACTCGAAGAAAACTGC
AAAAGCTGTGTATGATGCATGTGATGGGCAAGAGTATTTGTTGACTGGCA
ATATTCTTGATTTACGCTTTGTACCAGACTCATTCGCACCCCCACGACCA
CCAACTGACGTTTGCACTGAACTAAAATCAGACTATGAACCACAACACTT
TACAACAACAGCTCTTGGTGCAACACAAGTCCATCTTACATGGGAAAATG
GTGATTTGGAAAGGAGAAGATTGTTGCAGAACTGGCACAATGATCCATCC
CATCCTCTGTCAACCTCATCTCACACAGCAGTCCCAAAGGAAGATGAGTT
CGAAAAGTACATTGCCTCTTCCTCCTCCTCGTCTTCCTCATCATCATCTG
AGGAAGAGGAGGAGGTGGAGGTGGAGAAAGCTGGGGAAGAGGAGAAGGAG
GGAGAGAAGGGGAAGGGGAAGGGGAAGGGGAAGGGGAAGGGAAAGGGGAA
AGCAGTGAGTGAAGAGGAGAAGAAGAGGAGAAGGAGGGAAGTTACAAAAC
GTCTTGCTGTTGTTGGTGTAGATTGGGAAATGGTTGGAGCACAAGAATTG
TATGCCCTTCTCAATTCTTTTCTTCCCACAGCACCATCAGCAGACGACGA
CAAGCCTGCATCCTCTTCTTCCTCCTCCGTACCATCATCATCCTTTGCTC
GTTTGGAGCGTGTTGGTGTGTATTTGTCTGATTTTGGGGCAAAGTATGTG
CATTTGGAGGAGGAAAAAGGGCCACAAGGACTTGAAGGGGACAAGGGAGA
TGAAGAAGTGGAGATTGTGAGGAGGTATGAGAAGCGAAGGATGAAGTATT
ACTATGCGATTGCAGAATTTGACTCGAAGAAAACTGCAAAAGCTGTGTAT
GATGCATGTGATGGGCAAGAGTATTTGTTGACTGGCAATATTCTTGATTT
ACGCTTTGTACCAGACTCATTCGCACCCCCACGACCACCAACTGACGTTT
GCACTGAACTAAAATCAGACTATGAACCACAACACTTTACAACAACAGCT
CTTGGTGCAACACAAGTCCATCTTACATGGGAAAATGGTGATTTGGAAAG
GAGAAGATTGTTGCAGAACTGGCACAATGATCCATCCCATCCTCTGTCAA
CCTCATCTCACACAGCAGTCCCAAAGGAAGATGAGTTCGAAAAGTACATT
GCCTCTTCCTCCTCCTCGTCTTCCTCATCATCATCTGAGGAAGAGGAGGA
GGTGGAGGTGGAGAAAGCTGGGGAAGAGGAGAAGGAGGGAGAGAAGGGGA
AGGGGAAGGGGAAGGGGAAGGGGAAGGGAAAGGGGAAAGCAGTGAGTGAA
GAGGAGAAGAAGAGGAGAAGGAGG
back to top