mRNA_M-pyrifera_M_contig87037.20239.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87037.20239.1
Unique NamemRNA_M-pyrifera_M_contig87037.20239.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: R7UHH5_CAPTE (Uncharacterized protein (Fragment) n=2 Tax=Capitella teleta TaxID=283909 RepID=R7UHH5_CAPTE)

HSP 1 Score: 84.0 bits (206), Expect = 1.350e-17
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 AIVLADTPALQEMKDPLRAT--FRPDASTEGTAGDGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKPGN-FQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLR 342
            A+ + DTPA Q++K+ +      RP +S E            + TLR++SE G  T +L M F DTI+D+RDC+ K R+K    +QI + +P+R  DD   +L E GLTP+A+L L+
Sbjct:  101 ALTMVDTPAAQQLKERMEQDEGIRPPSSRE------------LTTLRIKSEQGDHTYILKMRFSDTIRDVRDCLNKQRSKASTAYQIMSTFPNRVYDDDFASLKECGLTPSATLHLK 205          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A7S0UWG9_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UWG9_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 5.740e-16
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  121 VATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKPGN------------FQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLRIL 348
            VATL+V+SE G+ T +L M ++DT+  +R  I+  R+K               ++IRTA+PSR L DPK+TL EAGL PNA+LFL+ L
Sbjct:   72 VATLQVKSEDGKLTFILKMGYEDTVGAVRQAIDAFRSKNAQGEGGGAGKSGDRYEIRTAFPSRSLVDPKETLQEAGLVPNATLFLKAL 159          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A5A8CBG3_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CBG3_CAFRO)

HSP 1 Score: 80.1 bits (196), Expect = 4.200e-15
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   49 LRATFRP-DASTEGTAGDGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKPGNFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLR 342
            + +TFRP   ++EG       D D+V TL +RS+SGRQT+++ + +DDT+ DLR  +++ R K  ++ + TA+P R   D  QTL +AGL PNA L ++
Sbjct:  481 MSSTFRPAPLASEGQDAALSSD-DKVTTLVIRSDSGRQTLVVKLRYDDTVGDLRAYVDRYRAKSSSYDLVTAFPRRAYTDASQTLQDAGLVPNAKLMIQ 578          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A250XT64_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XT64_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 7.880e-15
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  121 VATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTK----------PGNFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLRIL 348
            +ATL+V+SE G+QT +L M FDD+I  LR CI+  RTK            +++IR A+P+R   + K+TL +AGL PNA+LFL+ L
Sbjct:  530 IATLQVKSEDGQQTFILKMQFDDSIYALRKCIDAHRTKLAKEQNKPVPSSHYEIRGAFPARAYTEAKETLRDAGLVPNATLFLKAL 615          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A6P8HYL9_ACTTE (UBX domain-containing protein 11-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HYL9_ACTTE)

HSP 1 Score: 75.5 bits (184), Expect = 7.840e-14
Identity = 41/115 (35.65%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 AIVLADTPALQEMKDPLRATFR-PDASTEGTAGDGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKAR-TKPGNFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFL 339
            ++V+ +TPAL+++K     + + PD     T+        ++ATLR++SE+G +T +L M F DTI DLR  ++  R  +  N+QI++++P++   +   TL E GL PNA+L L
Sbjct:  186 SVVVVNTPALEDIKSRAEESDKHPDRPKSATS--------KIATLRIKSETGEKTYILKMSFSDTIADLRKHLDLVRPNEASNYQIKSSFPNKVYSNLNSTLQECGLVPNATLHL 292          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: UPI00189CFD5B (UBX domain-containing protein 11 n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189CFD5B)

HSP 1 Score: 75.5 bits (184), Expect = 1.690e-13
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 AIVLADTPALQEMKDPLRATF--RPDASTEGTAGDGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKAR--TKPGNFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLR 342
            +++L DTPALQ MK  L+ +   RP ++ +            V TL+V+SE G  T +L M F +TI DLR  ++K R    PG + I +AYP    DD  QTL+  GLT NA+L LR
Sbjct:  371 SVILIDTPALQAMKYRLQMSSPDRPSSARD------------VITLKVKSEDGNHTYILKMSFSETIDDLRQHLDKLRGAALPG-YDIISAYPQCCYDDDHQTLLSCGLTTNATLLLR 475          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A150GAZ6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GAZ6_GONPE)

HSP 1 Score: 73.9 bits (180), Expect = 6.110e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  121 VATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKPGN----FQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLR 342
            V TL+V+S  G+QT ++ M +DDT+  LR CI     K G+    ++IR+A+P+R   D  +TL +AGL PNA+LFLR
Sbjct:  550 VTTLQVKSVDGKQTYIMKMKYDDTVAALRACINAHHAKSGHSGLTYEIRSAFPARAYTDEGETLRQAGLVPNATLFLR 627          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A8J7NZ77_ATRSP (UBX11 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NZ77_ATRSP)

HSP 1 Score: 73.2 bits (178), Expect = 7.100e-13
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 1
Query:    1 AIVLADTPALQEMKDPLRATFRPDASTEGTAGDGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKP-GNFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLRI 345
            ++VL +TPALQ MK  L  +      T             ++TLRV+SE G QT ++ M F +TI  LR  +   R +    + I +A+P R   D  QTL + GLTPNA+L LR+
Sbjct:  212 SVVLIETPALQAMKQRLEMSVAKRPPTP----------QNISTLRVKSEDGEQTFIVKMLFSETIGQLRQYLNTHRGEDCPEYDIISAFPQRQYSDGSQTLQQCGLTPNATLLLRV 317          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A2J8A139_9CHLO (UBX domain-containing protein 11 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A139_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 8.370e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   97 DGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKPG----NFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLR 342
            DG      V TL+V+S  G+QT +L M +DDTI +LR C++   +K G    ++++R+A+P+R   +  +TL +AGL PNA+LFLR
Sbjct:  564 DGQPPATEVTTLQVKSVDGKQTYILKMKYDDTIGNLRACLDAHHSKGGLAGVSYEMRSAFPARAYTEAGETLRQAGLVPNATLFLR 649          
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Match: A0A8J4BN72_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BN72_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-12
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   97 DGDGDHDRVATLRVRSESGRQTILLHMHFDDTIQDLRDCIEKARTKPG----NFQIRTAYPSRPLDDPKQTLVEAGLTPNASLFLR 342
            DG      V TL+V++  G+QT +L   +DDTI  LR C++    K G    +++IR+A+P+R   D  +TL +AGL PNA+LFLR
Sbjct:  535 DGQPPTTEVTTLQVKNVDGKQTYILKFKYDDTIGTLRTCLDAHHAKAGQMGLSYEIRSAFPARAYTDAAETLRQAGLVPNATLFLR 620          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87037.20239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7UHH5_CAPTE1.350e-1739.32Uncharacterized protein (Fragment) n=2 Tax=Capitel... [more]
A0A7S0UWG9_9CHLO5.740e-1646.59Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A5A8CBG3_CAFRO4.200e-1541.41Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A250XT64_9CHLO7.880e-1546.51Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A6P8HYL9_ACTTE7.840e-1435.65UBX domain-containing protein 11-like n=1 Tax=Acti... [more]
UPI00189CFD5B1.690e-1341.53UBX domain-containing protein 11 n=1 Tax=Sebastes ... [more]
A0A150GAZ6_GONPE6.110e-1346.15Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J7NZ77_ATRSP7.100e-1337.93UBX11 protein (Fragment) n=1 Tax=Atractosteus spat... [more]
A0A2J8A139_9CHLO8.370e-1343.02UBX domain-containing protein 11 n=1 Tax=Tetrabaen... [more]
A0A8J4BN72_9CHLO1.140e-1243.02Uncharacterized protein n=1 Tax=Volvox africanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87037contigM-pyrifera_M_contig87037:4..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.1
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog7918.ENSLOCP00000004805
Preferred nameUBXN11
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0032182,GO:0043130,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.UBX domain protein 11
EggNOG OGs38H77@33154,3BJXH@33208,3CZ5C@33213,48BHE@7711,48V29@7742,49WMT@7898,KOG2086@1,KOG2086@2759
COG Functional cat.Y
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.7900517-CDS-M-pyrifera_M_contig87037:3..3631622816779.7900517-CDS-M-pyrifera_M_contig87037:3..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87037 4..363 +
1692278173.9854722-CDS-M-pyrifera_M_contig87037:3..3631692278173.9854722-CDS-M-pyrifera_M_contig87037:3..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87037 4..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87037.20239.1prot_M-pyrifera_M_contig87037.20239.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87037 4..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87037.20239.1

>prot_M-pyrifera_M_contig87037.20239.1 ID=prot_M-pyrifera_M_contig87037.20239.1|Name=mRNA_M-pyrifera_M_contig87037.20239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
AIVLADTPALQEMKDPLRATFRPDASTEGTAGDGDGDHDRVATLRVRSES
GRQTILLHMHFDDTIQDLRDCIEKARTKPGNFQIRTAYPSRPLDDPKQTL
VEAGLTPNASLFLRILPDE*
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mRNA from alignment at M-pyrifera_M_contig87037:4..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87037.20239.1 ID=mRNA_M-pyrifera_M_contig87037.20239.1|Name=mRNA_M-pyrifera_M_contig87037.20239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig87037:4..363+ (Macrocystis pyrifera P11B4 male)
GCCATCGTCCTCGCTGACACTCCAGCCTTGCAAGAAATGAAGGACCCACT CAGAGCAACTTTCCGCCCAGACGCAAGCACAGAAGGGACTGCGGGAGATG GGGATGGAGACCACGACAGAGTCGCTACGCTCAGAGTTCGCTCCGAGTCA GGACGACAGACCATCCTGCTGCACATGCACTTTGATGATACCATACAAGA CCTCAGGGATTGCATCGAAAAAGCGAGGACAAAGCCCGGAAACTTTCAAA TCAGAACGGCGTACCCATCCAGACCTCTGGATGACCCCAAACAAACCCTT GTGGAAGCAGGACTTACACCAAATGCGTCACTCTTCCTCAGAATCCTACC AGATGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87037:4..363+

>mRNA_M-pyrifera_M_contig87037.20239.1 ID=mRNA_M-pyrifera_M_contig87037.20239.1|Name=mRNA_M-pyrifera_M_contig87037.20239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig87037:4..363+ (Macrocystis pyrifera P11B4 male)
GCCATCGTCCTCGCTGACACTCCAGCCTTGCAAGAAATGAAGGACCCACT
CAGAGCAACTTTCCGCCCAGACGCAAGCACAGAAGGGACTGCGGGAGATG
GGGATGGAGACCACGACAGAGTCGCTACGCTCAGAGTTCGCTCCGAGTCA
GGACGACAGACCATCCTGCTGCACATGCACTTTGATGATACCATACAAGA
CCTCAGGGATTGCATCGAAAAAGCGAGGACAAAGCCCGGAAACTTTCAAA
TCAGAACGGCGTACCCATCCAGACCTCTGGATGACCCCAAACAAACCCTT
GTGGAAGCAGGACTTACACCAAATGCGTCACTCTTCCTCAGAATCCTACC
AGATGAGTGAGCCATCGTCCTCGCTGACACTCCAGCCTTGCAAGAAATGA
AGGACCCACTCAGAGCAACTTTCCGCCCAGACGCAAGCACAGAAGGGACT
GCGGGAGATGGGGATGGAGACCACGACAGAGTCGCTACGCTCAGAGTTCG
CTCCGAGTCAGGACGACAGACCATCCTGCTGCACATGCACTTTGATGATA
CCATACAAGACCTCAGGGATTGCATCGAAAAAGCGAGGACAAAGCCCGGA
AACTTTCAAATCAGAACGGCGTACCCATCCAGACCTCTGGATGACCCCAA
ACAAACCCTTGTGGAAGCAGGACTTACACCAAATGCGTCACTCTTCCTCA
GAATCCTACCAGATGAGTGA
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