mRNA_M-pyrifera_M_contig87014.20228.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87014.20228.1
Unique NamemRNA_M-pyrifera_M_contig87014.20228.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: A0A7S4IFQ3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IFQ3_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 2.690e-18
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTACAPKLFRYRGHSSTEE 198
            C  C +PF    R+HHCR CG IFC+ C  ++AS+P WFGY  PQRVC  C P+LF  R  S   E
Sbjct:   86 CTRCELPFTFFRRRHHCRFCGRIFCNKCCHVQASYPVWFGYDSPQRVCEECIPQLFDCRQQSDVPE 151
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: A0A6B2LWY4_9EUKA (FYVE-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LWY4_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 6.490e-15
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTACAP 159
            C  C   F + +R+HHCR CG IFCD+C++ R +FP  +GY  P+R+CT C P
Sbjct:    9 CAGCLSEFSVFLRRHHCRACGDIFCDTCTAERIAFPEAYGYIEPERICTYCKP 61
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: A0A7S0M164_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M164_9CRYP)

HSP 1 Score: 72.4 bits (176), Expect = 6.090e-14
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHG-PQRVCTACAPKL 165
            C  C+  FGLL RKHHCR CG++FCD CSS  A  P+ FG+H  PQRVC  C   L
Sbjct:   18 CSACQALFGLLRRKHHCRRCGHVFCDKCSSKTAVLPASFGFHTVPQRVCEPCLDLL 73
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: F2U6I0_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6I0_SALR5)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-13
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTACAPKLFRYRGHSSTEEE 201
            CF+CR  FGL +R+HHCR CG IFC SCSS   +  S FG   P RVC +C  K+ +    +ST EE
Sbjct:  163 CFSCRSTFGLTVRRHHCRNCGQIFCQSCSSKTTTI-SRFGIEKPVRVCDSCFDKIQKGENVTSTAEE 228
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: F0ZN48_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZN48_DICPU)

HSP 1 Score: 73.2 bits (178), Expect = 1.500e-13
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTAC 153
            C  C+  F L+ R+HHCR+CG IFCDSCSS  +  P+ +GY GPQR+C  C
Sbjct:   25 CNGCQAQFTLIRRRHHCRMCGSIFCDSCSSFYSILPAEYGYSGPQRLCRVC 75
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: A0A4U8UWM7_STECR (Hepatocyte growth factor-regulated tyrosine kinase substrate n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8UWM7_STECR)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-13
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTAC-----APKLFRYRGHSSTEE 198
            CF CRI FGL+ RKHHCR CG +FCD CSS     P+ FG   P RVC  C     +P + + +  S  EE
Sbjct:  165 CFRCRIQFGLITRKHHCRACGQVFCDRCSSKSMILPN-FGIEKPVRVCDTCYNKRVSPSVTKKKYESKAEE 234
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: SLOB1_DICDI (Probable inactive serine/threonine-protein kinase slob1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SLOB1_DICDI)

HSP 1 Score: 72.0 bits (175), Expect = 3.820e-13
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTAC 153
            C +C++PF L+ R+HHCR CG IFCDSCSS  +  P  +GY G QR+C +C
Sbjct:   27 CNDCQLPFTLIRRRHHCRKCGSIFCDSCSSFYSILPIEYGYTGQQRLCRSC 77
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: A0A7S4UC22_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4UC22_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 3.830e-13
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTACAPKL 165
            C  CR  FG  +RKHHCR CGYIFCD C+S    FP  +GY   QRVC  C  ++
Sbjct:   37 CKKCREEFGFFLRKHHCRGCGYIFCDPCTSNSVQFPEEWGYSEKQRVCVKCMIRI 91
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: G0UPB2_TRYCI (FYVE-type domain-containing protein n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0UPB2_TRYCI)

HSP 1 Score: 71.6 bits (174), Expect = 5.320e-13
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTACAPKL 165
            C  C   F L +R+HHCRLCG +FCD CS  RA+ P+ F   G QRVC  C  +L
Sbjct: 1172 CVQCNAAFTLFVRRHHCRLCGEVFCDGCSQRRATIPAHFKLEGQQRVCDRCFQRL 1226
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BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Match: A0A7S0VJG9_9CRYP (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VJG9_9CRYP)

HSP 1 Score: 71.2 bits (173), Expect = 7.030e-13
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHG-PQRVCTACA 156
            C  C++ FG++ RKHHCR CG++FCD CSS     P  FG++  PQRVC ACA
Sbjct:  277 CNKCQMAFGMMRRKHHCRRCGHVFCDKCSSRTVVLPQSFGFNQQPQRVCDACA 329
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87014.20228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IFQ3_9EUKA2.690e-1851.52Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6B2LWY4_9EUKA6.490e-1549.06FYVE-type domain-containing protein n=1 Tax=Arcell... [more]
A0A7S0M164_9CRYP6.090e-1457.14Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
F2U6I0_SALR51.110e-1350.75Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
F0ZN48_DICPU1.500e-1354.90Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A4U8UWM7_STECR1.510e-1347.89Hepatocyte growth factor-regulated tyrosine kinase... [more]
SLOB1_DICDI3.820e-1354.90Probable inactive serine/threonine-protein kinase ... [more]
A0A7S4UC22_9EUKA3.830e-1352.73Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
G0UPB2_TRYCI5.320e-1350.91FYVE-type domain-containing protein n=1 Tax=Trypan... [more]
A0A7S0VJG9_9CRYP7.030e-1354.72Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87014contigM-pyrifera_M_contig87014:637..837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score73.2
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog946362.XP_004995485.1
Preferred nameHGS
KEGG koko:K12182
KEGG Pathwayko04144,ko04145,map04144,map04145
KEGG ModuleM00408
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001505,GO:0001667,GO:0001932,GO:0001933,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005771,GO:0005773,GO:0005774,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006605,GO:0006622,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006836,GO:0006862,GO:0006886,GO:0006887,GO:0006897,GO:0006914,GO:0006928,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008285,GO:0008289,GO:0008293,GO:0008333,GO:0008592,GO:0008593,GO:0009056,GO:0009057,GO:0009405,GO:0009653,GO:0009888,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010324,GO:0010468,GO:0010556,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010631,GO:0010632,GO:0010640,GO:0010642,GO:0010646,GO:0010647,GO:0010648,GO:0010927,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0016197,GO:0016236,GO:0016322,GO:0016477,GO:0016482,GO:0016525,GO:0016740,GO:0017156,GO:0017157,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019904,GO:0019941,GO:0019953,GO:0021700,GO:0022008,GO:0022402,GO:0022412,GO:0022413,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0023061,GO:0030133,GO:0030141,GO:0030154,GO:0030163,GO:0030182,GO:0030334,GO:0030435,GO:0030437,GO:0030707,GO:0030855,GO:0030947,GO:0030948,GO:0031090,GO:0031321,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031396,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0032182,GO:0032266,GO:0032268,GO:0032269,GO:0032270,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032505,GO:0032507,GO:0032509,GO:0032511,GO:0032585,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0033565,GO:0033619,GO:0034067,GO:0034293,GO:0034613,GO:0034622,GO:0035091,GO:0036211,GO:0036257,GO:0036258,GO:0036452,GO:0040011,GO:0040012,GO:0040036,GO:0042058,GO:0042059,GO:0042127,GO:0042176,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042551,GO:0042763,GO:0042764,GO:0042802,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043405,GO:0043408,GO:0043412,GO:0043549,GO:0043632,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044419,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0045022,GO:0045053,GO:0045055,GO:0045184,GO:0045185,GO:0045202,GO:0045324,GO:0045743,GO:0045752,GO:0045765,GO:0045859,GO:0045921,GO:0045936,GO:0046425,GO:0046426,GO:0046618,GO:0046903,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051235,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051270,GO:0051321,GO:0051338,GO:0051503,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051651,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060429,GO:0060627,GO:0061024,GO:0061356,GO:0061357,GO:0061462,GO:0061512,GO:0061659,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070382,GO:0070647,GO:0070727,GO:0070925,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071985,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090087,GO:0090130,GO:0090132,GO:0090287,GO:0090288,GO:0097458,GO:0097479,GO:0097480,GO:0097499,GO:0097708,GO:0097734,GO:0098588,GO:0098657,GO:0098793,GO:0098805,GO:0098852,GO:0098916,GO:0098927,GO:0099003,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120113,GO:0140029,GO:0140030,GO:0140035,GO:0140036,GO:0140096,GO:0140112,GO:1901184,GO:1901185,GO:1901264,GO:1901342,GO:1901343,GO:1901564,GO:1901565,GO:1901575,GO:1901981,GO:1902531,GO:1902532,GO:1903046,GO:1903320,GO:1903322,GO:1903506,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1904669,GO:1904892,GO:1904893,GO:1904951,GO:1990182,GO:2000026,GO:2000112,GO:2000145,GO:2000181,GO:2000274,GO:2001141
EggNOG free text desc.intracellular protein transport
EggNOG OGs38EGA@33154,KOG1818@1,KOG1818@2759
COG Functional cat.TU
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.3533518-CDS-M-pyrifera_M_contig87014:636..8371622816779.3533518-CDS-M-pyrifera_M_contig87014:636..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87014 637..837 -
1692278173.7489476-CDS-M-pyrifera_M_contig87014:636..8371692278173.7489476-CDS-M-pyrifera_M_contig87014:636..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87014 637..837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87014.20228.1prot_M-pyrifera_M_contig87014.20228.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87014 637..837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87014.20228.1

>prot_M-pyrifera_M_contig87014.20228.1 ID=prot_M-pyrifera_M_contig87014.20228.1|Name=mRNA_M-pyrifera_M_contig87014.20228.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
CFNCRIPFGLLIRKHHCRLCGYIFCDSCSSLRASFPSWFGYHGPQRVCTA
CAPKLFRYRGHSSTEEE
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mRNA from alignment at M-pyrifera_M_contig87014:637..837-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87014.20228.1 ID=mRNA_M-pyrifera_M_contig87014.20228.1|Name=mRNA_M-pyrifera_M_contig87014.20228.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig87014:637..837- (Macrocystis pyrifera P11B4 male)
TGCTTCAACTGCAGGATTCCCTTCGGCCTGCTGATCAGGAAGCACCACTG
CAGGCTGTGCGGCTACATCTTCTGCGACAGCTGCTCCTCGCTGCGTGCCT
CCTTCCCCTCCTGGTTCGGCTACCATGGGCCGCAGAGGGTGTGCACCGCA
TGCGCGCCCAAGCTCTTCCGCTACAGAGGCCACTCCTCGACAGAGGAGGA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87014:637..837-

>mRNA_M-pyrifera_M_contig87014.20228.1 ID=mRNA_M-pyrifera_M_contig87014.20228.1|Name=mRNA_M-pyrifera_M_contig87014.20228.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig87014:637..837- (Macrocystis pyrifera P11B4 male)
TGCTTCAACTGCAGGATTCCCTTCGGCCTGCTGATCAGGAAGCACCACTG
CAGGCTGTGCGGCTACATCTTCTGCGACAGCTGCTCCTCGCTGCGTGCCT
CCTTCCCCTCCTGGTTCGGCTACCATGGGCCGCAGAGGGTGTGCACCGCA
TGCGCGCCCAAGCTCTTCCGCTACAGAGGCCACTCCTCGACAGAGGAGGA
GTGCTTCAACTGCAGGATTCCCTTCGGCCTGCTGATCAGGAAGCACCACT
GCAGGCTGTGCGGCTACATCTTCTGCGACAGCTGCTCCTCGCTGCGTGCC
TCCTTCCCCTCCTGGTTCGGCTACCATGGGCCGCAGAGGGTGTGCACCGC
ATGCGCGCCCAAGCTCTTCCGCTACAGAGGCCACTCCTCGACAGAGGAGG
AG
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