mRNA_M-pyrifera_M_contig87.20226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87.20226.1
Unique NamemRNA_M-pyrifera_M_contig87.20226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87.20226.1 vs. uniprot
Match: D7FM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM16_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.660e-8
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:    9 QKWMRQKVDVKTDEWHRVRALPLYCSS 89
            Q W+RQ++DV+TDEWHRVRALPLYCSS
Sbjct:  149 QGWVRQRIDVRTDEWHRVRALPLYCSS 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig87.20226.1 vs. uniprot
Match: A0A6H5KXJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.520e-6
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:    9 QKWMRQKVDVKTDEWHRVRALPLYCSS 89
            Q W+RQK+DV+TDEWHRVRALP+Y SS
Sbjct:  556 QGWVRQKIDVRTDEWHRVRALPMYYSS 582
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87.20226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM16_ECTSI4.660e-881.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXJ1_9PHAE3.520e-677.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87contigM-pyrifera_M_contig87:3251..3589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.2471168-CDS-M-pyrifera_M_contig87:3250..35891622816779.2471168-CDS-M-pyrifera_M_contig87:3250..3589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87 3251..3589 +
1692278173.6725652-CDS-M-pyrifera_M_contig87:3250..35891692278173.6725652-CDS-M-pyrifera_M_contig87:3250..3589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87 3251..3589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87.20226.1prot_M-pyrifera_M_contig87.20226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87 3251..3589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87.20226.1

>prot_M-pyrifera_M_contig87.20226.1 ID=prot_M-pyrifera_M_contig87.20226.1|Name=mRNA_M-pyrifera_M_contig87.20226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MIARNGCGRKLTSRRTSGTACAPCPCTVVAAAGSSSSSSSGRVLPRRVGG
RMQAEAGKSRCYRCVMAMCFSPPRVLAQLRKERVPEWPPECFRPHGMAKH
PLDDKAWNTQDDE
back to top

mRNA from alignment at M-pyrifera_M_contig87:3251..3589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87.20226.1 ID=mRNA_M-pyrifera_M_contig87.20226.1|Name=mRNA_M-pyrifera_M_contig87.20226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig87:3251..3589+ (Macrocystis pyrifera P11B4 male)
ATGATTGCCAGAAATGGATGCGGCAGAAAGTTGACGTCAAGACGGACGAG
TGGCACCGCGTGCGCGCCTTGCCCTTGTACTGTAGTAGCAGCAGCGGGTA
GCAGTAGCAGTAGCAGCAGCGGCCGAGTTTTGCCCCGGCGGGTTGGGGGG
CGGATGCAAGCCGAGGCCGGCAAGAGTCGATGTTACCGTTGCGTCATGGC
GATGTGTTTCTCGCCACCTCGTGTGTTGGCTCAGCTGAGGAAAGAAAGGG
TGCCTGAATGGCCTCCGGAGTGTTTCCGCCCACACGGTATGGCAAAGCAT
CCCCTTGATGACAAAGCTTGGAACACCCAAGACGATGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87:3251..3589+

>mRNA_M-pyrifera_M_contig87.20226.1 ID=mRNA_M-pyrifera_M_contig87.20226.1|Name=mRNA_M-pyrifera_M_contig87.20226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig87:3251..3589+ (Macrocystis pyrifera P11B4 male)
ATGATTGCCAGAAATGGATGCGGCAGAAAGTTGACGTCAAGACGGACGAG
TGGCACCGCGTGCGCGCCTTGCCCTTGTACTGTAGTAGCAGCAGCGGGTA
GCAGTAGCAGTAGCAGCAGCGGCCGAGTTTTGCCCCGGCGGGTTGGGGGG
CGGATGCAAGCCGAGGCCGGCAAGAGTCGATGTTACCGTTGCGTCATGGC
GATGTGTTTCTCGCCACCTCGTGTGTTGGCTCAGCTGAGGAAAGAAAGGG
TGCCTGAATGGCCTCCGGAGTGTTTCCGCCCACACGGTATGGCAAAGCAT
CCCCTTGATGACAAAGCTTGGAACACCCAAGACGATGAAATGATTGCCAG
AAATGGATGCGGCAGAAAGTTGACGTCAAGACGGACGAGTGGCACCGCGT
GCGCGCCTTGCCCTTGTACTGTAGTAGCAGCAGCGGGTAGCAGTAGCAGT
AGCAGCAGCGGCCGAGTTTTGCCCCGGCGGGTTGGGGGGCGGATGCAAGC
CGAGGCCGGCAAGAGTCGATGTTACCGTTGCGTCATGGCGATGTGTTTCT
CGCCACCTCGTGTGTTGGCTCAGCTGAGGAAAGAAAGGGTGCCTGAATGG
CCTCCGGAGTGTTTCCGCCCACACGGTATGGCAAAGCATCCCCTTGATGA
CAAAGCTTGGAACACCCAAGACGATGAA
back to top