mRNA_M-pyrifera_M_contig86954.20216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86954.20216.1
Unique NamemRNA_M-pyrifera_M_contig86954.20216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: A0A1Y1HK86_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK86_KLENI)

HSP 1 Score: 60.5 bits (145), Expect = 2.150e-8
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   28 SVDLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFMALYCSVTEKEGEEAAKQLVPPVDVAHVWRAHLIRPITYRSDCEELFGRQVSPAVL 315
            S DL+      ++ +A       LH+PE   + + RY  F   +  +  K GE A  +L+PP+DV   W  HL+ P+ YR++CE+L GR +  +V+
Sbjct:   74 SDDLVARARAQVKFLAAVEGANQLHAPENALKIVRRYARF---WLPLLAKHGESA--ELMPPLDVEWAWHCHLLNPLAYRAECEQLAGRVLDHSVI 164          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: A0A067GTI0_CITSI (Uncharacterized protein (Fragment) n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GTI0_CITSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.590e-7
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   34 DLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFMALYCSVTEKEGEEAAKQ--LVPPVDVAHVWRAHLIRPITYRSDCEELFGRQVSPAVLFSEV 327
            DL+ A +  LQ +A     + L+    L+R++ RY    A +  +  K  E    +  LV P+D   +W  H + P+ Y+SDCEEL+G+ +  + + S +
Sbjct:   25 DLVAAAKQQLQFLAAVDRNRWLYEGPALQRAIYRYN---ACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSI 121          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: V4RX40_CITCL (Uncharacterized protein n=1 Tax=Citrus clementina TaxID=85681 RepID=V4RX40_CITCL)

HSP 1 Score: 56.2 bits (134), Expect = 6.750e-7
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   34 DLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFMALYCSVTEKEGEEAAKQ--LVPPVDVAHVWRAHLIRPITYRSDCEELFGRQVSPAVLFSEV 327
            DL+ A +  LQ +A     + L+    L+R++ RY    A +  +  K  E    +  LV P+D   +W  H + P+ Y+SDCEEL+G+ +  + + S +
Sbjct:   23 DLVAAAKQQLQFLAAVDRNRWLYEGPTLQRAIYRYN---ACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSI 119          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: V4SFT2_CITCL (Uncharacterized protein n=6 Tax=Citrus TaxID=2706 RepID=V4SFT2_CITCL)

HSP 1 Score: 56.2 bits (134), Expect = 6.950e-7
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   34 DLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFMALYCSVTEKEGEEAAKQ--LVPPVDVAHVWRAHLIRPITYRSDCEELFGRQVSPAVLFSEV 327
            DL+ A +  LQ +A     + L+    L+R++ RY    A +  +  K  E    +  LV P+D   +W  H + P+ Y+SDCEEL+G+ +  + + S +
Sbjct:   23 DLVAAAKQQLQFLAAVDRNRWLYEGPTLQRAIYRYN---ACWLPLLAKHSESHISKGCLVVPLDCEWIWHCHRLNPVQYKSDCEELYGKNLDNSYVVSSI 119          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: UPI0009E1CC59 (glycine-rich domain-containing protein 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1CC59)

HSP 1 Score: 55.8 bits (133), Expect = 9.400e-7
Identity = 34/106 (32.08%), Postives = 51/106 (48.11%), Query Frame = 1
Query:    7 APKPLHFSVDLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELF---MALYCSVTEKEGEEAAKQLVPPVDVAHVWRAHLIRPITYRSDCEELFGRQVSPAVL 315
            A K   FS+DL+ A     Q +    A   L++   ++ ++ RYELF   +    SVTE         +  P+DVA VW  H++ PI+Y  DC E+    V   +L
Sbjct:    2 AEKTAQFSIDLVEAALKHRQFLQLVDAYPSLYAGPHVQNAIRRYELFWLPLLAQSSVTE--------DIAAPLDVAWVWHVHMLSPISYEKDCNEVVSTLVDHKIL 99          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: A0A3M6TIG4_POCDA (Uncharacterized protein (Fragment) n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TIG4_POCDA)

HSP 1 Score: 52.0 bits (123), Expect = 1.540e-5
Identity = 28/106 (26.42%), Postives = 49/106 (46.23%), Query Frame = 1
Query:   22 HFSVDLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFMALYCSVTEKEGEEAAKQLVP-----PVDVAHVWRAHLIRPITYRSDCEELFGRQVSPAVLFSE 324
             F +DL+ A    LQ +        L++   +  ++ RYELF   +  +  +      K  +P     P+D+A VW  H++ P++Y+ DC E+    V   +L  E
Sbjct:    8 QFGIDLVEAAIAQLQFLRIVDDYPSLYAGPHVRNAIRRYELF---WLPLLAQNATRIKKWFIPLNIAAPLDIAWVWHVHMLSPVSYQRDCNEIVATLVDHKILVGE 110          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: A0A6P5A292_BRABE (uncharacterized protein LOC109478672 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A292_BRABE)

HSP 1 Score: 50.8 bits (120), Expect = 5.350e-5
Identity = 27/97 (27.84%), Postives = 48/97 (49.48%), Query Frame = 1
Query:   10 PKPLHFSVDLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFMALYCSVTEKEGEEAAKQLVPPVDVAHVWRAHLIRPITYRSDCEELFGRQV 300
            PK +    DL++A +  L  + E      L+    ++ +L RYE    L+  +  + G    K L PP+D+  VW  H++ P+ Y +DC  + G+ +
Sbjct:    7 PKKIRIGTDLIKAAKYQLGFLKEVDRHPMLYEGPHVDNALRRYE---KLWLPLVARLG---TKGLSPPLDIHWVWHVHMLAPLHYEADCNNIVGKLI 97          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: A0A2K3DGI8_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DGI8_CHLRE)

HSP 1 Score: 50.4 bits (119), Expect = 7.630e-5
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   97 LHSPECLERSLVRYEL-FMALYCSVTEKEGEEAAK------QLVPPVDVAHVWRAH-LIRPITYRSDCEELFGRQVSPA 309
            L+S    +++ +RYEL ++ L       +  + A+      +LVPP+DVAHVW  H ++ P  Y  DC  L GR++ PA
Sbjct:   54 LYSGHYAQQAALRYELCWLPLAARAAAAQEAKRARGGRPFPELVPPLDVAHVWLLHRILDPAAYEQDCVRLLGRRLDPA 132          
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Match: A0A8J9VXR4_BRALA (Hypp5581 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VXR4_BRALA)

HSP 1 Score: 50.1 bits (118), Expect = 9.980e-5
Identity = 25/98 (25.51%), Postives = 48/98 (48.98%), Query Frame = 1
Query:   10 PKPLHFSVDLLRACETLLQCIAEFGALKDLHSPECLERSLVRYE-LFMALYCSVTEKEGEEAAKQLVPPVDVAHVWRAHLIRPITYRSDCEELFGRQV 300
            PK +H   DL++  +  L  + E      L+    ++ ++ RYE L++ L        G      + PP+D+  VW  H++ P+ Y++DC  + G+ +
Sbjct:    7 PKHIHIGTDLIKVAKYQLGFLKEVDQHPVLYDGPHVDNAIRRYEKLWLPLV-------GRVGTSGMSPPLDIHWVWHVHMLAPLHYQADCNNIVGKLI 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86954.20216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A1Y1HK86_KLENI2.150e-833.33Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A067GTI0_CITSI1.590e-730.00Uncharacterized protein (Fragment) n=1 Tax=Citrus ... [more]
V4RX40_CITCL6.750e-730.00Uncharacterized protein n=1 Tax=Citrus clementina ... [more]
V4SFT2_CITCL6.950e-730.00Uncharacterized protein n=6 Tax=Citrus TaxID=2706 ... [more]
UPI0009E1CC599.400e-732.08glycine-rich domain-containing protein 1-like n=1 ... [more]
A0A3M6TIG4_POCDA1.540e-526.42Uncharacterized protein (Fragment) n=1 Tax=Pocillo... [more]
A0A6P5A292_BRABE5.350e-527.84uncharacterized protein LOC109478672 n=1 Tax=Branc... [more]
A0A2K3DGI8_CHLRE7.630e-535.44Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A8J9VXR4_BRALA9.980e-525.51Hypp5581 protein n=1 Tax=Branchiostoma lanceolatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86954contigM-pyrifera_M_contig86954:48..374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.0
Seed ortholog evalue6.2e-09
Seed eggNOG ortholog3712.Bo7g118810.1
Hectar predicted targeting categoryother localisation
GOsGO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009966,GO:0009987,GO:0010646,GO:0010928,GO:0023051,GO:0033554,GO:0048580,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0071214,GO:0071470,GO:0104004,GO:2000026,GO:2000028,GO:2000241
EggNOG free text desc.cellular response to osmotic stress
EggNOG OGs28JC1@1,2QRQZ@2759,37ISR@33090,3GDPC@35493,3HPHE@3699
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.855982-CDS-M-pyrifera_M_contig86954:47..3741622816778.855982-CDS-M-pyrifera_M_contig86954:47..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86954 48..374 -
1692278173.4489188-CDS-M-pyrifera_M_contig86954:47..3741692278173.4489188-CDS-M-pyrifera_M_contig86954:47..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86954 48..374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86954.20216.1prot_M-pyrifera_M_contig86954.20216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86954 48..374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86954.20216.1

>prot_M-pyrifera_M_contig86954.20216.1 ID=prot_M-pyrifera_M_contig86954.20216.1|Name=mRNA_M-pyrifera_M_contig86954.20216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
VEAPKPLHFSVDLLRACETLLQCIAEFGALKDLHSPECLERSLVRYELFM
ALYCSVTEKEGEEAAKQLVPPVDVAHVWRAHLIRPITYRSDCEELFGRQV
SPAVLFSEV
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mRNA from alignment at M-pyrifera_M_contig86954:48..374-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86954.20216.1 ID=mRNA_M-pyrifera_M_contig86954.20216.1|Name=mRNA_M-pyrifera_M_contig86954.20216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig86954:48..374- (Macrocystis pyrifera P11B4 male)
GTGGAGGCACCGAAGCCTCTCCACTTCTCGGTGGACCTCCTTCGAGCCTG TGAGACGCTGCTCCAGTGCATTGCCGAGTTCGGGGCATTGAAGGACCTGC ACTCGCCGGAGTGCCTGGAGAGGTCCCTGGTGCGGTACGAGCTGTTTATG GCTCTGTACTGCAGTGTGACAGAGAAGGAAGGAGAGGAGGCTGCCAAGCA GCTGGTCCCGCCTGTGGACGTGGCTCATGTATGGCGGGCACATCTCATTC GCCCTATCACCTACAGGTCAGACTGCGAAGAGCTCTTTGGGCGGCAAGTA TCTCCAGCGGTGCTCTTCTCGGAAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86954:48..374-

>mRNA_M-pyrifera_M_contig86954.20216.1 ID=mRNA_M-pyrifera_M_contig86954.20216.1|Name=mRNA_M-pyrifera_M_contig86954.20216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig86954:48..374- (Macrocystis pyrifera P11B4 male)
GTGGAGGCACCGAAGCCTCTCCACTTCTCGGTGGACCTCCTTCGAGCCTG
TGAGACGCTGCTCCAGTGCATTGCCGAGTTCGGGGCATTGAAGGACCTGC
ACTCGCCGGAGTGCCTGGAGAGGTCCCTGGTGCGGTACGAGCTGTTTATG
GCTCTGTACTGCAGTGTGACAGAGAAGGAAGGAGAGGAGGCTGCCAAGCA
GCTGGTCCCGCCTGTGGACGTGGCTCATGTATGGCGGGCACATCTCATTC
GCCCTATCACCTACAGGTCAGACTGCGAAGAGCTCTTTGGGCGGCAAGTA
TCTCCAGCGGTGCTCTTCTCGGAAGTAGTGGAGGCACCGAAGCCTCTCCA
CTTCTCGGTGGACCTCCTTCGAGCCTGTGAGACGCTGCTCCAGTGCATTG
CCGAGTTCGGGGCATTGAAGGACCTGCACTCGCCGGAGTGCCTGGAGAGG
TCCCTGGTGCGGTACGAGCTGTTTATGGCTCTGTACTGCAGTGTGACAGA
GAAGGAAGGAGAGGAGGCTGCCAAGCAGCTGGTCCCGCCTGTGGACGTGG
CTCATGTATGGCGGGCACATCTCATTCGCCCTATCACCTACAGGTCAGAC
TGCGAAGAGCTCTTTGGGCGGCAAGTATCTCCAGCGGTGCTCTTCTCGGA
AGTA
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