mRNA_M-pyrifera_M_contig8695.20215.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8695.20215.1
Unique NamemRNA_M-pyrifera_M_contig8695.20215.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8695.20215.1 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.970e-35
Identity = 76/119 (63.87%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:    4 TPSASSTRDFLWALGVVLSRGVSEEDVGGAGLVPYLEFANHGNIPGGGPEGGXXXXXXXXXXXGGGRATASCVRGFDKTTGSHYLRALRDVGPGEEFLIDYGSAKKSTYQFVRSYGFVN 360
            +PSAS+TRDFLWALGV+LSRGVSEE  GG GLVPYL+FANHG+   GG  GG             G   ASC RGFD  TG H LRALRD+ PGEE LIDYGSA K  Y+F R+YGFVN
Sbjct:  236 SPSASTTRDFLWALGVILSRGVSEEGAGGVGLVPYLDFANHGD---GGKGGGVAL----------GDGGASCERGFDAATGRHVLRALRDIAPGEELLIDYGSAAKGAYRFARTYGFVN 341
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BLAST of mRNA_M-pyrifera_M_contig8695.20215.1 vs. uniprot
Match: D7G0R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.330e-22
Identity = 57/94 (60.64%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 ATPSASSTRDFLWALGVVLSRGVSEEDVGGAGLVPYLEFANHGNIPGGGPEGGXXXXXXXXXXXGGGRATASCVRGFDKTTGSHYLRALRDVGP 282
            A+PSAS+T DFLWALGV+LSRGVSEE  GG GLVPYL+FANHG+   GG  GG             G   ASC RGFD  TG H LRALRD+ P
Sbjct:  242 ASPSASTTTDFLWALGVILSRGVSEEGAGGVGLVPYLDFANHGD---GGRGGGVAL----------GDGGASCERGFDPATGRHVLRALRDIAP 322
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8695.20215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5T1_9PHAE1.970e-3563.87SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0R8_ECTSI6.330e-2260.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8695contigM-pyrifera_M_contig8695:229..3073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1122
Cds size1122
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8695.20215.1prot_M-pyrifera_M_contig8695.20215.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8695 229..3073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.8004618-CDS-M-pyrifera_M_contig8695:228..5111622816778.8004618-CDS-M-pyrifera_M_contig8695:228..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8695 229..511 +
1692278173.416254-CDS-M-pyrifera_M_contig8695:228..5111692278173.416254-CDS-M-pyrifera_M_contig8695:228..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8695 229..511 +
1622816778.8134902-CDS-M-pyrifera_M_contig8695:2039..21881622816778.8134902-CDS-M-pyrifera_M_contig8695:2039..2188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8695 2040..2188 +
1692278173.428101-CDS-M-pyrifera_M_contig8695:2039..21881692278173.428101-CDS-M-pyrifera_M_contig8695:2039..2188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8695 2040..2188 +
1622816778.8238068-CDS-M-pyrifera_M_contig8695:2383..30731622816778.8238068-CDS-M-pyrifera_M_contig8695:2383..3073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8695 2384..3073 +
1692278173.437624-CDS-M-pyrifera_M_contig8695:2383..30731692278173.437624-CDS-M-pyrifera_M_contig8695:2383..3073Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8695 2384..3073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8695.20215.1

>prot_M-pyrifera_M_contig8695.20215.1 ID=prot_M-pyrifera_M_contig8695.20215.1|Name=mRNA_M-pyrifera_M_contig8695.20215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=374bp
ATPSASSTRDFLWALGVVLSRGVSEEDVGGAGLVPYLEFANHGNIPGGGP
EGGGVGAGGIEGGGGGGRATASCVRGFDKTTGSHYLRALRDVGPGEEFLI
DYGSAKKSTYQFVRSYGFVNAPPSTSGGGNAGRGQRGSNSDSIRGGGGSD
STPEDATHPGPAASSEGSGTGGTALPSFSVELKLGDARNALDSLVSSGSE
VGSEGQFSATAGAMVGSLSAEKDPAVVADDAAESAAAGIPASAASAGGAE
AAVSAAPEAPTAPAAAAATSSSAATSQATAPSQETARRATTAAAAAGADA
AAMCAALDERLRRYSTTLEQDLEVLQRFSFEQEQEQGQEQEREQAASHRA
VTSEWVKTCVSVRAAEKLALRRAL
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mRNA from alignment at M-pyrifera_M_contig8695:229..3073+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8695.20215.1 ID=mRNA_M-pyrifera_M_contig8695.20215.1|Name=mRNA_M-pyrifera_M_contig8695.20215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2845bp|location=Sequence derived from alignment at M-pyrifera_M_contig8695:229..3073+ (Macrocystis pyrifera P11B4 male)
GCAACACCCTCGGCCTCGTCTACCCGAGACTTCCTATGGGCCTTAGGGGT
AGTCTTGTCCAGAGGCGTATCTGAAGAAGACGTAGGCGGGGCGGGCCTCG
TTCCGTACTTGGAGTTTGCTAACCACGGAAACATTCCGGGAGGCGGCCCC
GAGGGCGGGGGCGTGGGTGCCGGTGGAATTGAGGGCGGCGGCGGGGGCGG
GCGCGCAACGGCGTCTTGCGTGAGGGGGTTCGACAAGACCACGGGGAGTC
ACTACCTGCGCGCTCTGCGGGACGTCGGACCTGGTACGTCACGGCGTCGT
GTACGTATATATATAGATGTATGGCTGCTGGGTAGGCCTTGACAGCTCGT
CAACGCGGTTTTCCAACCATTCGCAGGCATGTCTCCTCCCAAGTCGGGGG
TCCTCGTGTATTTGGGATGCGATGCAACACGTTTGTGGTATGTCTTGACC
AGCGGGTGGGATTTTTCATCGGCTTGCGCGTGCGTGTGTGCACTGTGTTT
TCGAACTCGGTTTTTGCGCGAGGTGTGGACCCTGAGGAATATGGCATTGC
AGTAGTGGTCCCTTTGCAGTGCCGGTTGAGCTTTAGTGCCGGCTGCTCGC
TACCGTGCCGGTAGATTCACTTAGTACAGACGGGATTCGCCAGTGCGGTA
GTGTGCGGAGTAGTGCCCGTTGCCGCTATTAATAATGCCGGTAGTGTTGA
CGGGCGCACACCGGCCCTACTGCAGGTACCCCGCTTACTGTGTATAGCGC
GGCTCCGCCATTGCTGAATTTGTGCGTATGATCTGTGTTCTCTCTGTTAT
GTACGTAGTGATTTGATCTGTCCATCGTGTGCGACATCCCATTCGCTTGC
CTTCGCTTCGTTGCGCGTCGTGTTTGCCCGCCCTTACGCATGCCCCCTTG
AGGGTACCTGGCCGCGACGGTGGTATTTTAAGACGTGACCCAGCTTTGAC
AAACATGGTGGTATATATAGTCCACACTAACCCCTCATTACATCTTCGTT
CCTAAACACTTCCCAAGAAATTTCCCAAGAAACTTGTCAAACGTTTCCTC
AGGGAGTTTCCCAAGAATTTCCCCAGGCGGTCGGGGTTAAGGGTTCGGGT
TTCGAGTCGGGTTGAGAGATTGAGCTCTTCGTGTGAGTAGCTCAGTAAAA
AAGGCACCACCCCTAAAAGGCACTGGCAAGAGAGCCAAAACGTAAACAGC
TCTCAACGTTTGATTGGCTTTTTTTGTTTGTTTGGTTCCTGTGCGGCCCC
TGTTGTGAGTTGCTTCGCCTTTGCGACACGTGAGGACAATTAGCCTCGCT
ACAGGCCTACCAACAGCAGTCGTCGTGCTGTCCGCCCACGTTGAGTGTGC
AATTGTACTCGCGCACGCCCGTGTGTGCGTGAATGAAAGCTGCGAAAAAA
GTCGAAAGAACGTTTCTGTCTCCTCTCTCGCTGTTTTCGGTGCTACTTTC
GGTAGGGAGCGTTGAACTTTCCGCCGGGTCGATGCGACTATCAATACCAT
GTTTGCTACTTCTCGCTCTTCTTTCTACTTGTTCGAAACCGCGATCTTTT
GTTCGTTTCCTTGTCTTGCCCCCTCTCTGCGCAACGTGCGTTTTACGATG
CTTACCTTTTGCTTCTTCCATTAAACGGCGATTGTTTTTTTCTCTTTATC
TTAGTTTCCCTTGTGCGTAGCGTACATATGTTTGTTCGACGCTCACCTGC
AGCTTCTTATTCGAAACCGGCGATTTTTTTTTGTTCATGTATTATTTTCC
CGGTGCATGACCTTGCCGTAACCGTGTACATGCTTTACGATGCTCACCTT
GTCTGCGGCAGGCGAGGAGTTCCTCATCGACTACGGCTCGGCGAAGAAGT
CGACGTACCAGTTCGTCAGGAGCTACGGTTTCGTCAACGCCCCCCCCAGT
ACCAGCGGTGGCGGTAACGCCGGGCGGGGCCAGCGAGGCAGCAACTCAGA
CAGCATCCGAGTCTATCTAAGCGGGCCGAAGCTTTCACCACCACTACCAC
GCACTCCACCCTCCCCCCCGACCGAGGGGGCAACATCGGCAAAGAGGTCC
GAAACGAGTATCTTCGATGGTCTCACGGGAGCATCCGGATCCCTAGGCAA
TCATTCTAGGATGGCCGGTGAGGGCGATCCTAGCGACCACGCCCGCGGAG
GAGAGGGAGGGGGAGGCAGTGATAGCACCCCAGAGGATGCAACCCACCCA
GGCCCTGCTGCAAGTTCAGAAGGTAGTGGTACTGGCGGAACGGCTCTTCC
CAGTTTTTCGGTGGAACTCAAGCTTGGAGACGCGAGGAACGCCCTCGATT
CCTTAGTCTCCTCAGGCTCCGAGGTTGGCTCCGAAGGACAATTCTCAGCG
ACCGCCGGAGCAATGGTTGGCTCTTTGTCTGCGGAAAAAGACCCTGCGGT
GGTTGCGGACGATGCGGCCGAATCTGCGGCGGCGGGCATCCCGGCATCAG
CGGCATCAGCGGGAGGAGCGGAAGCAGCAGTATCAGCAGCACCAGAAGCG
CCAACAGCGCCAGCAGCAGCAGCAGCAACATCATCATCAGCAGCAACATC
ACAAGCAACAGCACCATCGCAAGAAACAGCTCGAAGAGCAACAACAGCAG
CAGCAGCAGCAGGAGCAGATGCAGCAGCGATGTGCGCCGCTCTCGATGAA
CGCTTGCGCCGTTACTCGACCACCCTTGAGCAAGACCTGGAAGTTCTCCA
GAGATTTTCTTTCGAGCAGGAGCAGGAGCAGGGGCAGGAGCAAGAACGGG
AACAGGCGGCGTCGCATAGAGCGGTGACCAGTGAGTGGGTGAAGACGTGC
GTCAGTGTGAGGGCGGCCGAAAAACTCGCCTTGAGGCGTGCTCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8695:229..3073+

>mRNA_M-pyrifera_M_contig8695.20215.1 ID=mRNA_M-pyrifera_M_contig8695.20215.1|Name=mRNA_M-pyrifera_M_contig8695.20215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2244bp|location=Sequence derived from alignment at M-pyrifera_M_contig8695:229..3073+ (Macrocystis pyrifera P11B4 male)
GCAACACCCTCGGCCTCGTCTACCCGAGACTTCCTATGGGCCTTAGGGGT
AGTCTTGTCCAGAGGCGTATCTGAAGAAGACGTAGGCGGGGCGGGCCTCG
TTCCGTACTTGGAGTTTGCTAACCACGGAAACATTCCGGGAGGCGGCCCC
GAGGGCGGGGGCGTGGGTGCCGGTGGAATTGAGGGCGGCGGCGGGGGCGG
GCGCGCAACGGCGTCTTGCGTGAGGGGGTTCGACAAGACCACGGGGAGTC
ACTACCTGCGCGCTCTGCGGGACGTCGGACCTGGCAACACCCTCGGCCTC
GTCTACCCGAGACTTCCTATGGGCCTTAGGGGTAGTCTTGTCCAGAGGCG
TATCTGAAGAAGACGTAGGCGGGGCGGGCCTCGTTCCGTACTTGGAGTTT
GCTAACCACGGAAACATTCCGGGAGGCGGCCCCGAGGGCGGGGGCGTGGG
TGCCGGTGGAATTGAGGGCGGCGGCGGGGGCGGGCGCGCAACGGCGTCTT
GCGTGAGGGGGTTCGACAAGACCACGGGGAGTCACTACCTGCGCGCTCTG
CGGGACGTCGGACCTGGCGAGGAGTTCCTCATCGACTACGGCTCGGCGAA
GAAGTCGACGTACCAGTTCGTCAGGAGCTACGGTTTCGTCAACGCCCCCC
CCAGTACCAGCGGTGGCGGTAACGCCGGGCGGGGCCAGCGAGGCAGCAAC
TCAGACAGCATCCGAGCGAGGAGTTCCTCATCGACTACGGCTCGGCGAAG
AAGTCGACGTACCAGTTCGTCAGGAGCTACGGTTTCGTCAACGCCCCCCC
CAGTACCAGCGGTGGCGGTAACGCCGGGCGGGGCCAGCGAGGCAGCAACT
CAGACAGCATCCGAGGAGGGGGAGGCAGTGATAGCACCCCAGAGGATGCA
ACCCACCCAGGCCCTGCTGCAAGTTCAGAAGGTAGTGGTACTGGCGGAAC
GGCTCTTCCCAGTTTTTCGGTGGAACTCAAGCTTGGAGACGCGAGGAACG
CCCTCGATTCCTTAGTCTCCTCAGGCTCCGAGGTTGGCTCCGAAGGACAA
TTCTCAGCGACCGCCGGAGCAATGGTTGGCTCTTTGTCTGCGGAAAAAGA
CCCTGCGGTGGTTGCGGACGATGCGGCCGAATCTGCGGCGGCGGGCATCC
CGGCATCAGCGGCATCAGCGGGAGGAGCGGAAGCAGCAGTATCAGCAGCA
CCAGAAGCGCCAACAGCGCCAGCAGCAGCAGCAGCAACATCATCATCAGC
AGCAACATCACAAGCAACAGCACCATCGCAAGAAACAGCTCGAAGAGCAA
CAACAGCAGCAGCAGCAGCAGGAGCAGATGCAGCAGCGATGTGCGCCGCT
CTCGATGAACGCTTGCGCCGTTACTCGACCACCCTTGAGCAAGACCTGGA
AGTTCTCCAGAGATTTTCTTTCGAGCAGGAGCAGGAGCAGGGGCAGGAGC
AAGAACGGGAACAGGCGGCGTCGCATAGAGCGGTGACCAGTGAGTGGGTG
AAGACGTGCGTCAGTGTGAGGGCGGCCGAAAAACTCGCCTTGAGGCGTGC
TCTAGGAGGGGGAGGCAGTGATAGCACCCCAGAGGATGCAACCCACCCAG
GCCCTGCTGCAAGTTCAGAAGGTAGTGGTACTGGCGGAACGGCTCTTCCC
AGTTTTTCGGTGGAACTCAAGCTTGGAGACGCGAGGAACGCCCTCGATTC
CTTAGTCTCCTCAGGCTCCGAGGTTGGCTCCGAAGGACAATTCTCAGCGA
CCGCCGGAGCAATGGTTGGCTCTTTGTCTGCGGAAAAAGACCCTGCGGTG
GTTGCGGACGATGCGGCCGAATCTGCGGCGGCGGGCATCCCGGCATCAGC
GGCATCAGCGGGAGGAGCGGAAGCAGCAGTATCAGCAGCACCAGAAGCGC
CAACAGCGCCAGCAGCAGCAGCAGCAACATCATCATCAGCAGCAACATCA
CAAGCAACAGCACCATCGCAAGAAACAGCTCGAAGAGCAACAACAGCAGC
AGCAGCAGCAGGAGCAGATGCAGCAGCGATGTGCGCCGCTCTCGATGAAC
GCTTGCGCCGTTACTCGACCACCCTTGAGCAAGACCTGGAAGTTCTCCAG
AGATTTTCTTTCGAGCAGGAGCAGGAGCAGGGGCAGGAGCAAGAACGGGA
ACAGGCGGCGTCGCATAGAGCGGTGACCAGTGAGTGGGTGAAGACGTGCG
TCAGTGTGAGGGCGGCCGAAAAACTCGCCTTGAGGCGTGCTCTA
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