prot_M-pyrifera_M_contig86904.20208.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig86904.20208.1
Unique Nameprot_M-pyrifera_M_contig86904.20208.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length171
Homology
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A6B0WTI0_9ACTN (Transcription termination/antitermination protein NusA n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WTI0_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 7.510e-54
Identity = 94/120 (78.33%), Postives = 104/120 (86.67%), Query Frame = 0
Query:    2 KALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTEDA 121
            KALSPA++ +VRP+  TGDCDVIVPD+QLSLAIGKEGQNARLASRLTGWGINIKSETQLAEE AYGDVEWAEGEW+TDPETGEQ+WQPADGG+AVSA  WA A+ +  E A D    EDA
Sbjct:  264 KALSPARIKEVRPNEMTGDCDVIVPDYQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEAAYGDVEWAEGEWITDPETGEQLWQPADGGEAVSAEAWAAAMAQ--EQAEDAGSGEDA 381          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A6B1B127_9ACTN (Transcription termination/antitermination protein NusA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B127_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 8.830e-54
Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 0
Query:    1 MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAV 105
            MKALSPAKV +VRPD  TGDC+VIVPD+QLSLAIGKEGQNARLASRLTGWGINIKSE+QLAEEEAYGDVEWAEGEWV  PE+GEQVWQPADGG+ VSA  WAEA 
Sbjct:  263 MKALSPAKVKEVRPDEATGDCEVIVPDYQLSLAIGKEGQNARLASRLTGWGINIKSESQLAEEEAYGDVEWAEGEWVIHPESGEQVWQPADGGEVVSADAWAEAA 367          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A3C0HLX5_9ACTN (Transcription termination factor NusA (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HLX5_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 1.460e-51
Identity = 89/120 (74.17%), Postives = 102/120 (85.00%), Query Frame = 0
Query:    2 KALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGD-VEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTED 120
            +ALSPAKVT+VRPD  TGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQ AEE+AY + VEWA+GEW+ DPETGE +WQPADG D +S +D+  A+ E   AA+D+AP  D
Sbjct:  145 RALSPAKVTEVRPDEMTGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQFAEEQAYAEGVEWADGEWIQDPETGENLWQPADGSDPISEADYL-AMQEEEAAAADEAPVSD 263          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2D6U9Y1_9ACTN (Transcription termination/antitermination protein NusA n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U9Y1_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 2.870e-50
Identity = 89/120 (74.17%), Postives = 102/120 (85.00%), Query Frame = 0
Query:    2 KALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGD-VEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTED 120
            +ALSPAKVT+VRPD  TGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQ AEE+AY + VEWA+GEW+ DPETGE +WQPADG D +S +D+  A+ E   AA+D+AP  D
Sbjct:  264 RALSPAKVTEVRPDEMTGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQFAEEQAYAEGVEWADGEWIQDPETGENLWQPADGSDPISEADYL-AMQEEEAAAADEAPVSD 382          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: UPI001AA04B1F (transcription termination factor NusA n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA04B1F)

HSP 1 Score: 166 bits (420), Expect = 1.760e-46
Identity = 81/116 (69.83%), Postives = 97/116 (83.62%), Query Frame = 0
Query:    2 KALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAP 117
            KALSPAKV +VR D ETG  +VIVPD+QLSLAIGKEGQNARLA+RLTGW ++IKSE+QLAEE+AY + EWAEGEWV DPETGEQVWQPA+GG+A+SA  W++A +   E   +D P
Sbjct:  265 KALSPAKVKEVRIDEETGTAEVIVPDYQLSLAIGKEGQNARLAARLTGWRVDIKSESQLAEEQAYANQEWAEGEWVVDPETGEQVWQPAEGGEAISAEQWSQAAESLAEREVEDGP 380          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A6J7LFX5_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7LFX5_9ZZZZ)

HSP 1 Score: 156 bits (395), Expect = 5.300e-46
Identity = 78/115 (67.83%), Postives = 97/115 (84.35%), Query Frame = 0
Query:    1 MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDD 115
            MKALSPAKV +VR   +TG  +VIVPD+QLSLAIGKEGQNARLA+RLTGW ++IKSETQLAEEEAY + +WAEGEWV D E+GEQVWQPA+GG+A+SA  +A+A ++  E  ++D
Sbjct:    1 MKALSPAKVKEVRIHEDTGTAEVIVPDYQLSLAIGKEGQNARLAARLTGWRVDIKSETQLAEEEAYANQDWAEGEWVVDAESGEQVWQPAEGGEAMSAEAYAQAAEDLDENVAED 115          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: UPI001E536BF4 (transcription termination factor NusA n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=UPI001E536BF4)

HSP 1 Score: 164 bits (414), Expect = 1.740e-45
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = 0
Query:    1 MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAA 112
            MKALSPAKV +VR D ETG   VIVPD+QLSLAIGKEGQNARLA+RLTGW ++IKSETQLAEEEAY   EWAEGEW+ DPETGEQVWQPA+GG A+SA +W+    + ++A+
Sbjct:  264 MKALSPAKVKEVRIDEETGTATVIVPDYQLSLAIGKEGQNARLAARLTGWRVDIKSETQLAEEEAYASEEWAEGEWIVDPETGEQVWQPAEGGPALSAEEWSAGAGDESDAS 375          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2E9LCL8_9ACTN (Transcription termination/antitermination protein NusA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LCL8_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 3.360e-45
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    2 KALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASD 114
            KALSPAKV +VR D ETG  DVIVPD+QLSLAIGKEGQNARL++RLTGW I+IKSETQ AEE+AY DV+WAEGEWV DPETGEQVWQPA+GG AVSA +W EA  E     SD
Sbjct:  264 KALSPAKVQEVRIDLETGTADVIVPDYQLSLAIGKEGQNARLSARLTGWRIDIKSETQQAEEDAYQDVDWAEGEWVEDPETGEQVWQPAEGGPAVSAEEW-EATSETESEDSD 375          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2E3ZDV8_9ACTN (Transcription termination/antitermination protein NusA n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A2E3ZDV8_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 8.610e-45
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 0
Query:    2 KALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTE 119
            KALSPAKV +VR D ETG  DVIVPD+QLSLAIGKEGQNARL++RLTGW I+IKSETQ AEE+AY +V+WAEGEWV DPETGEQVWQPA+GG A+SA +W    D   EA +  + TE
Sbjct:  264 KALSPAKVQEVRIDMETGTADVIVPDYQLSLAIGKEGQNARLSARLTGWRIDIKSETQQAEEDAYQNVDWAEGEWVEDPETGEQVWQPAEGGPALSAEEWEATSDTEEEAETVSSDTE 381          
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2D6PH78_9ACTN (Transcription termination/antitermination protein NusA n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6PH78_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 9.960e-45
Identity = 84/119 (70.59%), Postives = 96/119 (80.67%), Query Frame = 0
Query:    1 MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTE 119
            MKALSPAKV  V  D E+G   VIVPD+QLSLAIGKEGQNARLA+R+TGW ++IKSETQ+AEE AY DV+WAEGEW+ D ETGEQVW+PA+GG AVSA  W EA  E+ EA S DAP E
Sbjct:  263 MKALSPAKVKDVLIDEESGTATVIVPDYQLSLAIGKEGQNARLAARMTGWRVDIKSETQVAEEAAYADVDWAEGEWIVDEETGEQVWRPAEGGPAVSADQWVEASAESAEA-SGDAPVE 380          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B0WTI0_9ACTN7.510e-5478.33Transcription termination/antitermination protein ... [more]
A0A6B1B127_9ACTN8.830e-5485.71Transcription termination/antitermination protein ... [more]
A0A3C0HLX5_9ACTN1.460e-5174.17Transcription termination factor NusA (Fragment) n... [more]
A0A2D6U9Y1_9ACTN2.870e-5074.17Transcription termination/antitermination protein ... [more]
UPI001AA04B1F1.760e-4669.83transcription termination factor NusA n=1 Tax=Rhab... [more]
A0A6J7LFX5_9ZZZZ5.300e-4667.83Unannotated protein n=1 Tax=freshwater metagenome ... [more]
UPI001E536BF41.740e-4571.43transcription termination factor NusA n=1 Tax=Acti... [more]
A0A2E9LCL8_9ACTN3.360e-4575.22Transcription termination/antitermination protein ... [more]
A0A2E3ZDV8_9ACTN8.610e-4570.34Transcription termination/antitermination protein ... [more]
A0A2D6PH78_9ACTN9.960e-4570.59Transcription termination/antitermination protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 1..157
e-value: 1.6E-29
score: 104.9
IPR030842Transcription termination/antitermination protein NusA, bacterialPANTHERPTHR22648TRANSCRIPTION TERMINATION FACTOR NUSAcoord: 2..126
IPR009019K homology domain superfamily, prokaryotic typeSUPERFAMILY54814Prokaryotic type KH domain (KH-domain type II)coord: 2..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86904contigM-pyrifera_M_contig86904:8..520 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86904.20208.1mRNA_M-pyrifera_M_contig86904.20208.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig86904 2..767 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig86904.20208.1 ID=prot_M-pyrifera_M_contig86904.20208.1|Name=mRNA_M-pyrifera_M_contig86904.20208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGW
GINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASD
WAEAVDENTEAASDDAPTEDAAPAEDAAPAEEAVSEEAVSEEPVSEEPVS
EEPVSEEPVAADSADGEDDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015946KH_dom-like_a/b
IPR030842NusA_bac
IPR009019KH_sf_prok-type