mRNA_M-pyrifera_M_contig86904.20208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86904.20208.1
Unique NamemRNA_M-pyrifera_M_contig86904.20208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A6B1B127_9ACTN (Transcription termination/antitermination protein NusA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B127_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 5.700e-54
Identity = 92/107 (85.98%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAV 321
            FVMKALSPAKV +VRPD  TGDC+VIVPD+QLSLAIGKEGQNARLASRLTGWGINIKSE+QLAEEEAYGDVEWAEGEWV  PE+GEQVWQPADGG+ VSA  WAEA 
Sbjct:  261 FVMKALSPAKVKEVRPDEATGDCEVIVPDYQLSLAIGKEGQNARLASRLTGWGINIKSESQLAEEEAYGDVEWAEGEWVIHPESGEQVWQPADGGEVVSADAWAEAA 367
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A6B0WTI0_9ACTN (Transcription termination/antitermination protein NusA n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WTI0_9ACTN)

HSP 1 Score: 188 bits (477), Expect = 6.900e-54
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTEDA 369
            FV KALSPA++ +VRP+  TGDCDVIVPD+QLSLAIGKEGQNARLASRLTGWGINIKSETQLAEE AYGDVEWAEGEW+TDPETGEQ+WQPADGG+AVSA  WA A+ +  E A D    EDA
Sbjct:  261 FVTKALSPARIKEVRPNEMTGDCDVIVPDYQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEAAYGDVEWAEGEWITDPETGEQLWQPADGGEAVSAEAWAAAMAQ--EQAEDAGSGEDA 381
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A3C0HLX5_9ACTN (Transcription termination factor NusA (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HLX5_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 1.250e-51
Identity = 91/123 (73.98%), Postives = 104/123 (84.55%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGD-VEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTED 366
            FV +ALSPAKVT+VRPD  TGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQ AEE+AY + VEWA+GEW+ DPETGE +WQPADG D +S +D+  A+ E   AA+D+AP  D
Sbjct:  142 FVTRALSPAKVTEVRPDEMTGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQFAEEQAYAEGVEWADGEWIQDPETGENLWQPADGSDPISEADYL-AMQEEEAAAADEAPVSD 263
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2D6U9Y1_9ACTN (Transcription termination/antitermination protein NusA n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U9Y1_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 2.560e-50
Identity = 91/123 (73.98%), Postives = 104/123 (84.55%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGD-VEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTED 366
            FV +ALSPAKVT+VRPD  TGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQ AEE+AY + VEWA+GEW+ DPETGE +WQPADG D +S +D+  A+ E   AA+D+AP  D
Sbjct:  261 FVTRALSPAKVTEVRPDEMTGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQFAEEQAYAEGVEWADGEWIQDPETGENLWQPADGSDPISEADYL-AMQEEEAAAADEAPVSD 382
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: UPI001AA04B1F (transcription termination factor NusA n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA04B1F)

HSP 1 Score: 169 bits (429), Expect = 1.530e-46
Identity = 83/119 (69.75%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAP 357
            FV KALSPAKV +VR D ETG  +VIVPD+QLSLAIGKEGQNARLA+RLTGW ++IKSE+QLAEE+AY + EWAEGEWV DPETGEQVWQPA+GG+A+SA  W++A +   E   +D P
Sbjct:  262 FVAKALSPAKVKEVRIDEETGTAEVIVPDYQLSLAIGKEGQNARLAARLTGWRVDIKSESQLAEEQAYANQEWAEGEWVVDPETGEQVWQPAEGGEAISAEQWSQAAESLAEREVEDGP 380
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: UPI001E536BF4 (transcription termination factor NusA n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=UPI001E536BF4)

HSP 1 Score: 167 bits (424), Expect = 1.080e-45
Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAA 342
            FVMKALSPAKV +VR D ETG   VIVPD+QLSLAIGKEGQNARLA+RLTGW ++IKSETQLAEEEAY   EWAEGEW+ DPETGEQVWQPA+GG A+SA +W+    + ++A+
Sbjct:  262 FVMKALSPAKVKEVRIDEETGTATVIVPDYQLSLAIGKEGQNARLAARLTGWRVDIKSETQLAEEEAYASEEWAEGEWIVDPETGEQVWQPAEGGPALSAEEWSAGAGDESDAS 375
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2E9LCL8_9ACTN (Transcription termination/antitermination protein NusA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E9LCL8_9ACTN)

HSP 1 Score: 166 bits (421), Expect = 2.910e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASD 348
            FV KALSPAKV +VR D ETG  DVIVPD+QLSLAIGKEGQNARL++RLTGW I+IKSETQ AEE+AY DV+WAEGEWV DPETGEQVWQPA+GG AVSA +W EA  E     SD
Sbjct:  261 FVSKALSPAKVQEVRIDLETGTADVIVPDYQLSLAIGKEGQNARLSARLTGWRIDIKSETQQAEEDAYQDVDWAEGEWVEDPETGEQVWQPAEGGPAVSAEEW-EATSETESEDSD 375
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2D6PH78_9ACTN (Transcription termination/antitermination protein NusA n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6PH78_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 6.070e-45
Identity = 86/121 (71.07%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTE 363
            FVMKALSPAKV  V  D E+G   VIVPD+QLSLAIGKEGQNARLA+R+TGW ++IKSETQ+AEE AY DV+WAEGEW+ D ETGEQVW+PA+GG AVSA  W EA  E+ EA S DAP E
Sbjct:  261 FVMKALSPAKVKDVLIDEESGTATVIVPDYQLSLAIGKEGQNARLAARMTGWRVDIKSETQVAEEAAYADVDWAEGEWIVDEETGEQVWRPAEGGPAVSADQWVEASAESAEA-SGDAPVE 380
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A2E3ZDV8_9ACTN (Transcription termination/antitermination protein NusA n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A2E3ZDV8_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 7.410e-45
Identity = 85/121 (70.25%), Postives = 98/121 (80.99%), Query Frame = 1 
Query:    1 FVMKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDDAPTE 363
            FV KALSPAKV +VR D ETG  DVIVPD+QLSLAIGKEGQNARL++RLTGW I+IKSETQ AEE+AY +V+WAEGEWV DPETGEQVWQPA+GG A+SA +W    D   EA +  + TE
Sbjct:  261 FVSKALSPAKVQEVRIDMETGTADVIVPDYQLSLAIGKEGQNARLSARLTGWRIDIKSETQQAEEDAYQNVDWAEGEWVEDPETGEQVWQPAEGGPALSAEEWEATSDTEEEAETVSSDTE 381
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BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Match: A0A6J7LFX5_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7LFX5_9ZZZZ)

HSP 1 Score: 156 bits (394), Expect = 1.290e-44
Identity = 78/115 (67.83%), Postives = 97/115 (84.35%), Query Frame = 1 
Query:    7 MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGWGINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASDWAEAVDENTEAASDD 351
            MKALSPAKV +VR   +TG  +VIVPD+QLSLAIGKEGQNARLA+RLTGW ++IKSETQLAEEEAY + +WAEGEWV D E+GEQVWQPA+GG+A+SA  +A+A ++  E  ++D
Sbjct:    1 MKALSPAKVKEVRIHEDTGTAEVIVPDYQLSLAIGKEGQNARLAARLTGWRVDIKSETQLAEEEAYANQDWAEGEWVVDAESGEQVWQPAEGGEAMSAEAYAQAAEDLDENVAED 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86904.20208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1B127_9ACTN5.700e-5485.98Transcription termination/antitermination protein ... [more]
A0A6B0WTI0_9ACTN6.900e-5478.05Transcription termination/antitermination protein ... [more]
A0A3C0HLX5_9ACTN1.250e-5173.98Transcription termination factor NusA (Fragment) n... [more]
A0A2D6U9Y1_9ACTN2.560e-5073.98Transcription termination/antitermination protein ... [more]
UPI001AA04B1F1.530e-4669.75transcription termination factor NusA n=1 Tax=Rhab... [more]
UPI001E536BF41.080e-4571.93transcription termination factor NusA n=1 Tax=Acti... [more]
A0A2E9LCL8_9ACTN2.910e-4575.00Transcription termination/antitermination protein ... [more]
A0A2D6PH78_9ACTN6.070e-4571.07Transcription termination/antitermination protein ... [more]
A0A2E3ZDV8_9ACTN7.410e-4570.25Transcription termination/antitermination protein ... [more]
A0A6J7LFX5_9ZZZZ1.290e-4467.83Unannotated protein n=1 Tax=freshwater metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86904contigM-pyrifera_M_contig86904:2..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.6
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog1229780.BN381_330069
Preferred namenusA
KEGG koko:K02600
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0030312,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0040007,GO:0043244,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.Participates in both transcription termination and antitermination
EggNOG OGs2GJDJ@201174,3UW9A@52018,COG0195@1,COG0195@2
COG Functional cat.K
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03021
Exons1
Model size766
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86904.20208.1prot_M-pyrifera_M_contig86904.20208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86904 8..520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.3033235-UTR-M-pyrifera_M_contig86904:1..71622816778.3033235-UTR-M-pyrifera_M_contig86904:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86904 2..7 +
1692278173.0444844-UTR-M-pyrifera_M_contig86904:1..71692278173.0444844-UTR-M-pyrifera_M_contig86904:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86904 2..7 +
1622816778.3273687-UTR-M-pyrifera_M_contig86904:520..7671622816778.3273687-UTR-M-pyrifera_M_contig86904:520..767Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86904 521..767 +
1692278173.0713062-UTR-M-pyrifera_M_contig86904:520..7671692278173.0713062-UTR-M-pyrifera_M_contig86904:520..767Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86904 521..767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.316832-CDS-M-pyrifera_M_contig86904:7..5201622816778.316832-CDS-M-pyrifera_M_contig86904:7..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86904 8..520 +
1692278173.0601223-CDS-M-pyrifera_M_contig86904:7..5201692278173.0601223-CDS-M-pyrifera_M_contig86904:7..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86904 8..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86904.20208.1

>prot_M-pyrifera_M_contig86904.20208.1 ID=prot_M-pyrifera_M_contig86904.20208.1|Name=mRNA_M-pyrifera_M_contig86904.20208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
MKALSPAKVTQVRPDPETGDCDVIVPDFQLSLAIGKEGQNARLASRLTGW
GINIKSETQLAEEEAYGDVEWAEGEWVTDPETGEQVWQPADGGDAVSASD
WAEAVDENTEAASDDAPTEDAAPAEDAAPAEEAVSEEAVSEEPVSEEPVS
EEPVSEEPVAADSADGEDDA*
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mRNA from alignment at M-pyrifera_M_contig86904:2..767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86904.20208.1 ID=mRNA_M-pyrifera_M_contig86904.20208.1|Name=mRNA_M-pyrifera_M_contig86904.20208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=766bp|location=Sequence derived from alignment at M-pyrifera_M_contig86904:2..767+ (Macrocystis pyrifera P11B4 male)
TTCGTGATGAAGGCGCTGTCGCCGGCCAAGGTCACCCAGGTCCGACCCGA
CCCCGAGACGGGCGACTGCGACGTGATCGTGCCCGACTTCCAGCTGTCGC
TGGCCATCGGCAAGGAGGGGCAGAACGCACGCCTCGCCTCGCGTCTCACC
GGCTGGGGCATCAACATCAAGAGCGAGACCCAGCTGGCCGAGGAAGAGGC
CTACGGCGATGTCGAGTGGGCCGAGGGCGAGTGGGTGACCGACCCCGAGA
CCGGCGAACAGGTCTGGCAGCCGGCCGACGGCGGCGATGCCGTGTCGGCC
TCGGACTGGGCCGAAGCGGTCGACGAGAACACCGAGGCCGCCTCCGACGA
CGCCCCGACCGAGGACGCCGCTCCGGCTGAAGACGCCGCTCCTGCCGAAG
AAGCTGTTTCTGAAGAAGCTGTTTCTGAAGAACCAGTGTCTGAGGAACCA
GTGTCCGAAGAGCCAGTGTCGGAGGAACCAGTGGCTGCTGACTCGGCGGA
TGGCGAAGACGACGCCTGAGCGCCCACAACGGACCTGTGTGGGGTGTCGG
CGGGTCTTTCCCGCCGATGACCTCGTGCGGGTCCGAATCCACGACGGCGC
CCTGGTCACGGGACCCGGACCGGGCCGCGGTGCCTGGGTCGGACCGTCCA
CTGCGTGTGTCGAGTTGGCCACGCAGCGCAAGGGTCTCCAGCGGGGCCTG
CGAGCCGAGGTGAACGCTGCGGAGATCGCTAGGCTCTTGACGTCGTGGTC
GACAGAACCGTTCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86904:2..767+

>mRNA_M-pyrifera_M_contig86904.20208.1 ID=mRNA_M-pyrifera_M_contig86904.20208.1|Name=mRNA_M-pyrifera_M_contig86904.20208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig86904:2..767+ (Macrocystis pyrifera P11B4 male)
ATGAAGGCGCTGTCGCCGGCCAAGGTCACCCAGGTCCGACCCGACCCCGA
GACGGGCGACTGCGACGTGATCGTGCCCGACTTCCAGCTGTCGCTGGCCA
TCGGCAAGGAGGGGCAGAACGCACGCCTCGCCTCGCGTCTCACCGGCTGG
GGCATCAACATCAAGAGCGAGACCCAGCTGGCCGAGGAAGAGGCCTACGG
CGATGTCGAGTGGGCCGAGGGCGAGTGGGTGACCGACCCCGAGACCGGCG
AACAGGTCTGGCAGCCGGCCGACGGCGGCGATGCCGTGTCGGCCTCGGAC
TGGGCCGAAGCGGTCGACGAGAACACCGAGGCCGCCTCCGACGACGCCCC
GACCGAGGACGCCGCTCCGGCTGAAGACGCCGCTCCTGCCGAAGAAGCTG
TTTCTGAAGAAGCTGTTTCTGAAGAACCAGTGTCTGAGGAACCAGTGTCC
GAAGAGCCAGTGTCGGAGGAACCAGTGGCTGCTGACTCGGCGGATGGCGA
AGACGACGCCTGAATGAAGGCGCTGTCGCCGGCCAAGGTCACCCAGGTCC
GACCCGACCCCGAGACGGGCGACTGCGACGTGATCGTGCCCGACTTCCAG
CTGTCGCTGGCCATCGGCAAGGAGGGGCAGAACGCACGCCTCGCCTCGCG
TCTCACCGGCTGGGGCATCAACATCAAGAGCGAGACCCAGCTGGCCGAGG
AAGAGGCCTACGGCGATGTCGAGTGGGCCGAGGGCGAGTGGGTGACCGAC
CCCGAGACCGGCGAACAGGTCTGGCAGCCGGCCGACGGCGGCGATGCCGT
GTCGGCCTCGGACTGGGCCGAAGCGGTCGACGAGAACACCGAGGCCGCCT
CCGACGACGCCCCGACCGAGGACGCCGCTCCGGCTGAAGACGCCGCTCCT
GCCGAAGAAGCTGTTTCTGAAGAAGCTGTTTCTGAAGAACCAGTGTCTGA
GGAACCAGTGTCCGAAGAGCCAGTGTCGGAGGAACCAGTGGCTGCTGACT
CGGCGGATGGCGAAGACGACGCCTGA
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