mRNA_M-pyrifera_M_contig86903.20207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86903.20207.1
Unique NamemRNA_M-pyrifera_M_contig86903.20207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86903.20207.1 vs. uniprot
Match: A0A2E2C255_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2C255_9PLAN)

HSP 1 Score: 205 bits (521), Expect = 1.790e-63
Identity = 108/216 (50.00%), Postives = 137/216 (63.43%), Query Frame = 1 
Query:    1 MKLKRDELLLFYLPVTCLFLLSPTVFSPWWKTNLSGPLILVLVISFVFGLLLKRR-------TASTDNSRSKLEIIRLVIQSEFQIGQSPDDLQTVIQQAAGSWTIKVSELAGEGMAFLECERHPAPQSENDYPTGELLVDSGEIWFRDSSLDTKTFQLVDWQAGDPSIRLMFDADQQVRAIVIRPPYGDGAYRFKKSKTGFQLELIPDVFSINES 627
            MKL R+E LLFYLP+ CLFLL P  F+  WKT LSGPLIL + IS + G++L  R            + R   E IRL I  + QIGQ+ DD QTVI+ + GS+ I V EL GEG+A LEC  +   +   +    E+LVDSG+IW RDS L T++++L  WQ  D S+RL+ DADQQVR +VI PPYGDG Y   K  TGF LELIP + S  ++
Sbjct:    1 MKLNRNEFLLFYLPLACLFLLIPGAFNTLWKTYLSGPLILAMAISIITGIVLNLRRNRIPQDVIGQQSLRKMPETIRLTIHKDLQIGQTDDDTQTVIKGSGGSYKITVYELPGEGIALLECVLNNQIKPVTNIIPSEILVDSGQIWIRDSELATQSYELAVWQTEDSSMRLIVDADQQVRGVVINPPYGDGGYSLWKDATGFVLELIPGIHSAEKA 216
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86903.20207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E2C255_9PLAN1.790e-6350.00Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86903contigM-pyrifera_M_contig86903:199..834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size636
Cds size636
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.2708695-CDS-M-pyrifera_M_contig86903:198..8341622816778.2708695-CDS-M-pyrifera_M_contig86903:198..834Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86903 199..834 -
1692278173.0309045-CDS-M-pyrifera_M_contig86903:198..8341692278173.0309045-CDS-M-pyrifera_M_contig86903:198..834Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86903 199..834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86903.20207.1prot_M-pyrifera_M_contig86903.20207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86903 199..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86903.20207.1

>prot_M-pyrifera_M_contig86903.20207.1 ID=prot_M-pyrifera_M_contig86903.20207.1|Name=mRNA_M-pyrifera_M_contig86903.20207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
MKLKRDELLLFYLPVTCLFLLSPTVFSPWWKTNLSGPLILVLVISFVFGL
LLKRRTASTDNSRSKLEIIRLVIQSEFQIGQSPDDLQTVIQQAAGSWTIK
VSELAGEGMAFLECERHPAPQSENDYPTGELLVDSGEIWFRDSSLDTKTF
QLVDWQAGDPSIRLMFDADQQVRAIVIRPPYGDGAYRFKKSKTGFQLELI
PDVFSINESSI*
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mRNA from alignment at M-pyrifera_M_contig86903:199..834-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86903.20207.1 ID=mRNA_M-pyrifera_M_contig86903.20207.1|Name=mRNA_M-pyrifera_M_contig86903.20207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig86903:199..834- (Macrocystis pyrifera P11B4 male)
ATGAAACTGAAACGAGATGAACTGCTTCTGTTCTATCTACCGGTGACCTG
CCTGTTTCTCCTGTCACCGACAGTGTTCAGCCCATGGTGGAAGACAAATC
TCTCGGGACCGCTGATTCTGGTTCTGGTCATCAGCTTTGTCTTCGGACTC
CTGTTGAAACGACGTACTGCAAGTACCGACAACTCTCGGTCAAAACTCGA
AATAATTCGGTTGGTCATTCAATCTGAATTTCAGATCGGACAGTCCCCTG
ATGATTTACAAACTGTGATACAGCAAGCCGCTGGCAGTTGGACCATCAAA
GTCTCGGAACTTGCGGGAGAGGGAATGGCATTTCTGGAATGTGAACGGCA
TCCAGCACCGCAATCAGAGAATGATTACCCGACAGGGGAGCTCCTCGTCG
ACTCCGGAGAAATCTGGTTCCGCGATTCCAGTCTCGATACAAAGACATTT
CAACTTGTCGACTGGCAGGCTGGAGATCCCTCGATCAGGCTGATGTTTGA
TGCAGACCAGCAGGTGCGGGCAATCGTCATCCGTCCGCCTTACGGAGACG
GGGCTTATCGTTTCAAGAAAAGCAAAACCGGTTTCCAACTCGAACTGATA
CCGGACGTTTTCTCAATCAATGAGTCCAGCATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86903:199..834-

>mRNA_M-pyrifera_M_contig86903.20207.1 ID=mRNA_M-pyrifera_M_contig86903.20207.1|Name=mRNA_M-pyrifera_M_contig86903.20207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig86903:199..834- (Macrocystis pyrifera P11B4 male)
ATGAAACTGAAACGAGATGAACTGCTTCTGTTCTATCTACCGGTGACCTG
CCTGTTTCTCCTGTCACCGACAGTGTTCAGCCCATGGTGGAAGACAAATC
TCTCGGGACCGCTGATTCTGGTTCTGGTCATCAGCTTTGTCTTCGGACTC
CTGTTGAAACGACGTACTGCAAGTACCGACAACTCTCGGTCAAAACTCGA
AATAATTCGGTTGGTCATTCAATCTGAATTTCAGATCGGACAGTCCCCTG
ATGATTTACAAACTGTGATACAGCAAGCCGCTGGCAGTTGGACCATCAAA
GTCTCGGAACTTGCGGGAGAGGGAATGGCATTTCTGGAATGTGAACGGCA
TCCAGCACCGCAATCAGAGAATGATTACCCGACAGGGGAGCTCCTCGTCG
ACTCCGGAGAAATCTGGTTCCGCGATTCCAGTCTCGATACAAAGACATTT
CAACTTGTCGACTGGCAGGCTGGAGATCCCTCGATCAGGCTGATGTTTGA
TGCAGACCAGCAGGTGCGGGCAATCGTCATCCGTCCGCCTTACGGAGACG
GGGCTTATCGTTTCAAGAAAAGCAAAACCGGTTTCCAACTCGAACTGATA
CCGGACGTTTTCTCAATCAATGAGTCCAGCATCTGAATGAAACTGAAACG
AGATGAACTGCTTCTGTTCTATCTACCGGTGACCTGCCTGTTTCTCCTGT
CACCGACAGTGTTCAGCCCATGGTGGAAGACAAATCTCTCGGGACCGCTG
ATTCTGGTTCTGGTCATCAGCTTTGTCTTCGGACTCCTGTTGAAACGACG
TACTGCAAGTACCGACAACTCTCGGTCAAAACTCGAAATAATTCGGTTGG
TCATTCAATCTGAATTTCAGATCGGACAGTCCCCTGATGATTTACAAACT
GTGATACAGCAAGCCGCTGGCAGTTGGACCATCAAAGTCTCGGAACTTGC
GGGAGAGGGAATGGCATTTCTGGAATGTGAACGGCATCCAGCACCGCAAT
CAGAGAATGATTACCCGACAGGGGAGCTCCTCGTCGACTCCGGAGAAATC
TGGTTCCGCGATTCCAGTCTCGATACAAAGACATTTCAACTTGTCGACTG
GCAGGCTGGAGATCCCTCGATCAGGCTGATGTTTGATGCAGACCAGCAGG
TGCGGGCAATCGTCATCCGTCCGCCTTACGGAGACGGGGCTTATCGTTTC
AAGAAAAGCAAAACCGGTTTCCAACTCGAACTGATACCGGACGTTTTCTC
AATCAATGAGTCCAGCATCTGA
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