mRNA_M-pyrifera_M_contig10968.2020.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE) HSP 1 Score: 302 bits (773), Expect = 1.180e-92 Identity = 234/498 (46.99%), Postives = 279/498 (56.02%), Query Frame = 1
Query: 25 LSSRSPILRNIPSDPVPDRRSFGFSTSHHMPARYLSEG--RQSERQ-SPNPRSYTAQEMPAIYPHGYGYAVKEPFAYDDPGAPSRVPRQ----------SCRCQY-DCACSNNFSGVRSANSAPACHDSAEAPSSRWRK----DTITSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLACSA----------SLELSPAQAGKKSDWENLLGAVDLELRAQ-RAERVPEPPAARAVPRFDHXXXXXXADRSPLHHSSVGANRYLPSSSG--------LAASVSPDLGPRKPTHRRGGXXXXXXXMGVGDEVAGGGPAYSGSTADAACLLATLPQRMLDRASTSTATATPPPATFKPLQPLPPAASPAPA-------VFMSSPAVVSAVQGGSAPAPIRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGVEQQLNEISSGGCGKPFETAGAG 1386
++ SPILRNIPSDP DRRSF FS S MP++YLSEG RQ R+ SP+P +YTA+E+PA+YPH YGY + FA+ DP P+ +Q SCRCQ C+C+++ S +S+ S+E P + WR D +TA A+LA + ++EL+ + + KKSDWENLLGAVDLELRAQ R++ VP+ A VP + A LH+ + P +G AASVSP+ GP K G XXXXX YSGSTADAACLLATLPQRMLDR V + PA+VSA G P+RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDG+E+QLN+ISS G+PF TAGAG
Sbjct: 5 IADTSPILRNIPSDPA-DRRSFEFSPSP-MPSQYLSEGTARQDHRRHSPSPHNYTAREVPALYPHRYGYNIGGSFAHSDPEVPAVAEKQQQQLAFKPTSSCRCQRRQCSCNSSPSETAQKDSS-----SSEPPHAMWRNSKGGDANMTTARPSFFHGEAPAQQPPAAVSVSAPSRSPSPSAAILAQNRQQHSSRVLPRTIELTSSPS-KKSDWENLLGAVDLELRAQQRSKFVPDSTPATPVPSHHYARAINAAH---LHYQHQPLDDAPPLLTGGGYTQQQRAAASVSPEFGPVKTAPAPAGRHXXXXXXXXXXXXXX--XXYSGSTADAACLLATLPQRMLDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGIMPPALVSA--SGPPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISSVS-GRPFATAGAG 486
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI) HSP 1 Score: 255 bits (652), Expect = 6.340e-76 Identity = 207/487 (42.51%), Postives = 237/487 (48.67%), Query Frame = 1
Query: 25 LSSRSPILRNIPSDPVPDRRSFGFSTSHHMPARYLSEGRQSE---RQSPNPRSYTAQEMPAIYPHGYGYAVKEPFAYDDPGAPSRVPRQSCRCQYDCACSNNFSGVRSAN--------SAPACHDSAEAPSSRWRK----DTITSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLACSA----------SLELSPAQAGKKSDWENLLGAVDLELRAQ-RAERVPEPPAARAVPRFDHXXXXXXADRSPLHHSSVGANRYLPSSSGL------------------AASVSPDLGPRK--PTHRRGGXXXXXXXMGVGDEVAGGGPAYSGSTADAACLLATLPQRMLDRASTSTATATPPPATFKPLQPLPPAASPAPAVFMSSPAVVSAVQGGSAPAPIRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGVEQQLNEISS 1347
++ SPILRNIPSDP DRRSF FS S MPA+YLSEG S+ R SP+P SYTA+E+PA+YPH YGY + FA+ DP P V + +A S+E P + WR D +TA A+LA + ++EL+ + A KKSDWENLLGAVDLELRAQ R+E VP+ A VP + A LHH + P +G AASVSP+ GP K P R XXXXXXX GPAYSGSTADAACLLA SGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDG+E+QLN+ISS
Sbjct: 5 IADTSPILRNIPSDPA-DRRSFEFSPSP-MPAQYLSEGTASQDHRRHSPSPHSYTAREVPALYPHRYGYNMGGSFAHSDPQVPVAVEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQKDSSSSEPPHAMWRNSKGGDANMTTARPGLFHGEAPAQQPPAAVSVSAPSRSPSPSAAILAQNQQQHSSRVMPRTIELTSSPA-KKSDWENLLGAVDLELRAQQRSEFVPDSTPATPVPSHHYAHAINAAH---LHHQHQPLDDAPPLLTGXXXXXXXXXXXXYTQHQPAAASVSPEFGPIKTAPAARHXXXXXXXXXX-----XXXXGPAYSGSTADAACLLA----------------------------------------------------------------SGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGIERQLNDISS 416
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A835Z3I9_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I9_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.480e-26 Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1
Query: 1108 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLN 1305
QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGV+DSE AARAY+ +AL+HF GAKLN
Sbjct: 227 QASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVYDSELQAARAYNDSALEHFGAGAKLN 292
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: D7FLT6_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT6_ECTSI) HSP 1 Score: 120 bits (300), Expect = 6.390e-26 Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 1
Query: 1120 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGVEQQLNEISSGGCGKPFETAGA 1383
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDAAA H G++LN PD +E++L E+S+ GKPF TAGA
Sbjct: 304 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAARVH-CPGSQLNNPDQIERELYELSAAD-GKPFATAGA 389
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK) HSP 1 Score: 116 bits (291), Expect = 7.930e-26 Identity = 52/72 (72.22%), Postives = 67/72 (93.06%), Query Frame = 1
Query: 1102 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDG 1317
RVQ++GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVF++E +AA+AYD +A+++F +GA LNFPDG
Sbjct: 137 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPDG 208
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK) HSP 1 Score: 116 bits (291), Expect = 1.060e-25 Identity = 52/72 (72.22%), Postives = 67/72 (93.06%), Query Frame = 1
Query: 1102 RVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDG 1317
RVQ++GRRGPRGQS+FKGVC+TRAGKWR+VIY+GRKQ YLGVF++E +AA+AYD +A+++F +GA LNFPDG
Sbjct: 150 RVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNFPDG 221
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A6H5KY97_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY97_9PHAE) HSP 1 Score: 119 bits (299), Expect = 3.090e-25 Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1
Query: 1120 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNFPDGVEQQLNEISSGGCGKPFETAGA 1383
RRGP GQS FKGVCIT AG WRAVIY+ RKQKYLGVFDSEFDAARAYDAAA + + G++LN PD +E++L+E+S+ GKPF TAGA
Sbjct: 421 RRGPPGQSSFKGVCITPAGTWRAVIYVDRKQKYLGVFDSEFDAARAYDAAA-RVYCPGSQLNNPDQIERELHELSAAD-GKPFATAGA 506
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A835YVU4_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVU4_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 7.330e-17 Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1111 ASGRRGPRGQSRFKGVCITRAGKWRAVI-------------YIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLN 1305
A RRGPRGQSRFKGVCITRAGKWRAVI +IGR+QKYLGVFDSE AA AY+ +A Q F AKLN
Sbjct: 187 AKSRRGPRGQSRFKGVCITRAGKWRAVICEWLAAVAEFLHNHIGRRQKYLGVFDSEVQAAVAYNESAKQFFGAEAKLN 264
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.210e-15 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1
Query: 1147 FKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 1308
++GVC+TR GKWRAVIY RKQ YLGVF+SE DAA+A+D AA QHF + A +NF
Sbjct: 1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.470e-15 Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 1120 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 1308
RRG +G+S ++GVC+TR GKWRAVIY RKQ YLGVF+SE DAA+A+D AA HF A +NF
Sbjct: 22 RRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10968.2020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10968.2020.1 >prot_M-pyrifera_M_contig10968.2020.1 ID=prot_M-pyrifera_M_contig10968.2020.1|Name=mRNA_M-pyrifera_M_contig10968.2020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=525bp LSPVLSPRLSSRSPILRNIPSDPVPDRRSFGFSTSHHMPARYLSEGRQSEback to top mRNA from alignment at M-pyrifera_M_contig10968:2247..3821+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10968.2020.1 ID=mRNA_M-pyrifera_M_contig10968.2020.1|Name=mRNA_M-pyrifera_M_contig10968.2020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at M-pyrifera_M_contig10968:2247..3821+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10968:2247..3821+ >mRNA_M-pyrifera_M_contig10968.2020.1 ID=mRNA_M-pyrifera_M_contig10968.2020.1|Name=mRNA_M-pyrifera_M_contig10968.2020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3150bp|location=Sequence derived from alignment at M-pyrifera_M_contig10968:2247..3821+ (Macrocystis pyrifera P11B4 male)back to top |