mRNA_M-pyrifera_M_contig86844.20199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86844.20199.1
Unique NamemRNA_M-pyrifera_M_contig86844.20199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A8E2FA42_9PEZI (HEAT repeat protein-like protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2FA42_9PEZI)

HSP 1 Score: 82.4 bits (202), Expect = 4.210e-16
Identity = 40/95 (42.11%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTALE 318
            LRV IAV+ A +L  LPP  F   LP +LT VC+ LR++ Q  RD +RK +A I++++GPA+   +++ LR+AL  GY +HV+  T+ ++L ++ 
Sbjct: 1722 LRVPIAVAVAKILRILPPEEFSTRLPPVLTDVCHILRSKSQGARDMTRKTLADISALIGPAYFGFVLKELRSALQRGYQLHVLSFTVHSILISMS 1816
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A6G1I330_9PEZI (DRIM domain-containing protein n=1 Tax=Trichodelitschia bisporula TaxID=703511 RepID=A0A6G1I330_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 2.720e-15
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   37 RVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVL 306
            R+ +AV  A LL  L    F + LP LLT  CN LR++DQ  RD++RKA+ASI +++GP+ +  +I+ LRTAL  G+ +HV+ +T+ ++L
Sbjct: 1686 RIMLAVVIAKLLRLLSEEEFQVRLPALLTDTCNILRSKDQDSRDSTRKALASICTLIGPSSVGFVIKELRTALARGFYLHVLSYTVHSIL 1775
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A8E2JJX5_9PEZI (HEAT repeat protein-like protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2JJX5_9PEZI)

HSP 1 Score: 79.0 bits (193), Expect = 6.930e-15
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTALE 318
            LRV IAV+   +L  LPP  F   LP +L  VC+ LR++ Q  RD +RK +A I+S++GPA+   +++ LR AL  GY +HV+  T+ ++L  L 
Sbjct: 1721 LRVPIAVAVTKILRMLPPEEFAERLPPVLMDVCHILRSKSQDARDMTRKTLAEISSLIGPAYFGFVLKELRRALQRGYQLHVLSFTMHSILLELS 1815
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A2R5GNP6_9STRA (Small subunit processome component 20-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNP6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.930e-15
Identity = 36/96 (37.50%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   31 ELRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTALE 318
            ++R+ +AV+   +LN LP ++  + LPRLL K+C+ +R+     R+ +R+ + ++ + LGP HL T+I  LR  L EGY +H+ G++L A+L+ +E
Sbjct: 1733 DIRIHVAVAIVKVLNRLPAKVRALNLPRLLRKICDVMRSTKLPARNEARQTLIAVTTELGPDHLATVIDTLRDTLNEGYKLHIRGYSLHALLSGVE 1828
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A433DCD4_9FUNG (DRIM domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DCD4_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 6.130e-14
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVL 306
            +RV +A++   LL  LP +   + LP LLT VC  L++R Q  RD +R+ +  I++ LGPA+   +I+ L+ AL  GYM+HV+G TL ++L
Sbjct: 1917 IRVPVALAITKLLRALPEKSMRVNLPGLLTSVCQILKSRQQEARDVTRETLIKISNFLGPAYFGFIIKELQGALLRGYMLHVLGFTLNSLL 2007
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A507FKT1_9FUNG (DRIM domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FKT1_9FUNG)

HSP 1 Score: 75.5 bits (184), Expect = 1.140e-13
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:   19 DKKGELRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTAL 315
            D+   LRV +AV+   LL  LP     +ELPRLLT VC  L+ R Q  RD  R A+  IA  LGPA+   +I+ L+ AL  GY +HV+G T+  +L  +
Sbjct: 1747 DENVNLRVPVAVAITKLLLKLPEESMNVELPRLLTTVCQFLKNRLQDVRDGCRDALLKIARELGPAYFPFIIKELQGALLRGYQLHVLGFTVHHLLVGV 1845
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A4P9WNW1_9FUNG (DRIM domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WNW1_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 2.110e-13
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTAL 315
            +R+ IA++ A LL  +P     ++LP+LLT +CN LR+R Q  RD++R  +  I+ +LG   +  +++ L  AL  GY +HV+G+TL ++L A+
Sbjct: 1738 VRIPIALAIAKLLQRMPIESMELQLPKLLTTLCNLLRSRTQDARDSTRDTLVKISLLLGARFMPFIVKELEGALTRGYQLHVLGYTLHSLLAAV 1831
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A2Z6R831_9GLOM (DRIM domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R831_9GLOM)

HSP 1 Score: 74.7 bits (182), Expect = 2.130e-13
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTAL 315
            +RV IA++   LL  LP     + LP LLT +C  LR+R Q  RD +R  ++ I++ LGP +   +++ LR+AL  GY +H++G TL  +L  L
Sbjct: 1862 VRVPIALAITKLLKALPETSLRLNLPGLLTTICQILRSRQQDARDTTRDTLSKISTFLGPLYFSFIVKELRSALTRGYQLHILGFTLHTLLANL 1955
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A2I1GA04_9GLOM (DRIM domain-containing protein n=12 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GA04_9GLOM)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-13
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVLTAL 315
            +RV IA++   LL  LP +   + LP LLT VC  LR+R Q  RD +R  ++ I++ LGP +   +++ LR AL  GY +H++G T+  +L  L
Sbjct: 1871 IRVPIALAITKLLKALPEKSLRLNLPGLLTTVCQILRSRQQDARDTTRDTLSKISTFLGPLYFSFIVKELRGALTRGYQLHILGFTVHTLLANL 1964
[Close]
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Match: A0A433PJH3_9FUNG (DRIM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PJH3_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-13
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:   34 LRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTRDQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAAVL 306
            +RV +A++   LL  LP +   + LP LLT VC  L++R Q  RD +R  +  IA+ LGP +   +I+ L+ AL  GYM+HV+G T+ ++L
Sbjct: 1849 IRVPVALAITKLLRALPEKSMRLNLPGLLTSVCQILKSRQQDARDTTRDTLIKIANFLGPTYFAFIIKELQGALLRGYMLHVLGFTVNSLL 1939
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86844.20199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E2FA42_9PEZI4.210e-1642.11HEAT repeat protein-like protein n=1 Tax=Glonium s... [more]
A0A6G1I330_9PEZI2.720e-1544.44DRIM domain-containing protein n=1 Tax=Trichodelit... [more]
A0A8E2JJX5_9PEZI6.930e-1542.11HEAT repeat protein-like protein n=1 Tax=Lepidopte... [more]
A0A2R5GNP6_9STRA6.930e-1537.50Small subunit processome component 20-like n=1 Tax... [more]
A0A433DCD4_9FUNG6.130e-1441.76DRIM domain-containing protein n=2 Tax=Jimgerdeman... [more]
A0A507FKT1_9FUNG1.140e-1343.43DRIM domain-containing protein n=1 Tax=Chytriomyce... [more]
A0A4P9WNW1_9FUNG2.110e-1338.30DRIM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2Z6R831_9GLOM2.130e-1339.36DRIM domain-containing protein n=1 Tax=Rhizophagus... [more]
A0A2I1GA04_9GLOM2.900e-1339.36DRIM domain-containing protein n=12 Tax=Rhizophagu... [more]
A0A433PJH3_9FUNG2.900e-1340.66DRIM domain-containing protein n=1 Tax=Endogone sp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86844contigM-pyrifera_M_contig86844:235..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score81.6
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog28583.AMAG_04094T0
Preferred nameUTP20
KEGG koko:K14772
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.HEAT repeat protein
EggNOG OGs38G3S@33154,3NUBZ@4751,KOG1823@1,KOG1823@2759
COG Functional cat.V
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.829099-CDS-M-pyrifera_M_contig86844:234..5521622816777.829099-CDS-M-pyrifera_M_contig86844:234..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86844 235..552 +
1692278172.7098966-CDS-M-pyrifera_M_contig86844:234..5521692278172.7098966-CDS-M-pyrifera_M_contig86844:234..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86844 235..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86844.20199.1prot_M-pyrifera_M_contig86844.20199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86844 235..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86844.20199.1

>prot_M-pyrifera_M_contig86844.20199.1 ID=prot_M-pyrifera_M_contig86844.20199.1|Name=mRNA_M-pyrifera_M_contig86844.20199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MVGSGGDKKGELRVGIAVSFAHLLNHLPPRMFGIELPRLLTKVCNSLRTR
DQVRRDASRKAVASIASILGPAHLLTLIQHLRTALPEGYMVHVIGHTLAA
VLTALE
back to top

mRNA from alignment at M-pyrifera_M_contig86844:235..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86844.20199.1 ID=mRNA_M-pyrifera_M_contig86844.20199.1|Name=mRNA_M-pyrifera_M_contig86844.20199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig86844:235..552+ (Macrocystis pyrifera P11B4 male)
ATGGTGGGGAGTGGAGGGGATAAAAAAGGAGAACTGCGTGTTGGGATTGC
TGTGTCATTTGCTCATCTGCTCAATCACCTCCCTCCACGTATGTTTGGAA
TTGAATTGCCAAGGTTGTTGACTAAAGTATGCAACTCATTGCGTACAAGA
GATCAAGTACGACGTGATGCTTCGAGGAAAGCAGTTGCTTCTATTGCTTC
CATTCTCGGACCAGCACATCTTCTCACATTGATTCAACATTTGCGTACTG
CTCTTCCAGAAGGTTATATGGTACATGTGATTGGACACACACTTGCTGCT
GTGTTGACTGCATTGGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86844:235..552+

>mRNA_M-pyrifera_M_contig86844.20199.1 ID=mRNA_M-pyrifera_M_contig86844.20199.1|Name=mRNA_M-pyrifera_M_contig86844.20199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig86844:235..552+ (Macrocystis pyrifera P11B4 male)
ATGGTGGGGAGTGGAGGGGATAAAAAAGGAGAACTGCGTGTTGGGATTGC
TGTGTCATTTGCTCATCTGCTCAATCACCTCCCTCCACGTATGTTTGGAA
TTGAATTGCCAAGGTTGTTGACTAAAGTATGCAACTCATTGCGTACAAGA
GATCAAGTACGACGTGATGCTTCGAGGAAAGCAGTTGCTTCTATTGCTTC
CATTCTCGGACCAGCACATCTTCTCACATTGATTCAACATTTGCGTACTG
CTCTTCCAGAAGGTTATATGGTACATGTGATTGGACACACACTTGCTGCT
GTGTTGACTGCATTGGAAATGGTGGGGAGTGGAGGGGATAAAAAAGGAGA
ACTGCGTGTTGGGATTGCTGTGTCATTTGCTCATCTGCTCAATCACCTCC
CTCCACGTATGTTTGGAATTGAATTGCCAAGGTTGTTGACTAAAGTATGC
AACTCATTGCGTACAAGAGATCAAGTACGACGTGATGCTTCGAGGAAAGC
AGTTGCTTCTATTGCTTCCATTCTCGGACCAGCACATCTTCTCACATTGA
TTCAACATTTGCGTACTGCTCTTCCAGAAGGTTATATGGTACATGTGATT
GGACACACACTTGCTGCTGTGTTGACTGCATTGGAA
back to top