mRNA_M-pyrifera_M_contig86816.20188.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86816.20188.1
Unique NamemRNA_M-pyrifera_M_contig86816.20188.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A7S4MPS0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MPS0_9EUKA)

HSP 1 Score: 120 bits (301), Expect = 2.860e-30
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   19 WSVEDTQALLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLYW 303
            W   + + LL +C  +VG+HPDQA EG+VDF L    PFA++PCC+Y+KQF ++K  SG QV    DLV+HL  KHP+IR   + F+GKNT++YW
Sbjct:  300 WGWAELRELLENCSCIVGMHPDQAAEGIVDFALRMKKPFALIPCCVYSKQFPRKKTPSGAQVSNYQDLVDHLRAKHPDIRTMKMPFEGKNTIVYW 394          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A7J6STP5_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6STP5_PEROL)

HSP 1 Score: 103 bits (257), Expect = 1.030e-26
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   28 EDTQALLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY 300
            E    +L+   LVVGLH DQATE +VDF LA G PFAVVPCC+Y K F  RKL  G+ V T ++ + +L  K P IR +TL F G+NT +Y
Sbjct:    4 ETALEVLADASLVVGLHSDQATERIVDFALAAGKPFAVVPCCVYQKCFPDRKLPDGQLVSTYEEFITYLCSKDPRIRTQTLGFDGRNTAVY 94          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A7J6QY46_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QY46_PEROL)

HSP 1 Score: 105 bits (262), Expect = 1.770e-26
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 1
Query:   22 SVEDTQA---LLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY 300
            S++D +    +L+   LVVGLH DQATE +VDF LA G PFAVVPCC+Y K F  RKL  G+ V T +D + +L  K P IR +TL F G+NT +Y
Sbjct:   82 SIDDFETALEVLADASLVVGLHSDQATERIVDFALAAGKPFAVVPCCVYQKCFPDRKLPDGQLVNTYEDFITYLCSKDPRIRTQTLGFDGRNTAVY 177          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A059LGA5_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LGA5_9CHLO)

HSP 1 Score: 102 bits (255), Expect = 1.900e-26
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   43 LLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLYWLGP 312
            LL  C +VVG+HPDQATE  VD  LA G P+AVVPCC+Y     + +   G+ VR+  D VE+L  K P +R   L F+GKNTV+YW+GP
Sbjct:    4 LLQRCSVVVGMHPDQATEPAVDLALALGRPWAVVPCCVYGGARGRPRRLDGRLVRSHGDFVEYLRRKAPGVRVAKLPFEGKNTVVYWMGP 93          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A7S4IQ74_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQ74_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 2.660e-26
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   25 VEDTQALLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLYWLG 309
            +E    LL + G ++G+HPDQATE +VD+ L  G PFAVVPCC+ +KQF+KR    G+ V+T + LV H+  KHP+IR  TL F+GKNTVLY  G
Sbjct:  249 LEYVSKLLQNFGCIIGMHPDQATEAIVDYALLQGKPFAVVPCCVCSKQFTKRT-HDGETVKTYEHLVSHIQTKHPDIRVATLPFEGKNTVLYHHG 342          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A812IQF4_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IQF4_SYMPI)

HSP 1 Score: 99.4 bits (246), Expect = 4.830e-25
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   37 QALLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY 300
            +ALLS+  +VVGLHPD+ATE +VD  L  G  FAVVPCC++ ++F +R+LA G  VRT++    +L  K+P I+   L+F+G+N VLY
Sbjct:   12 EALLSNASVVVGLHPDEATESIVDLALKAGRRFAVVPCCVFAEKFPRRELAPGVPVRTLNQFCAYLRAKNPRIKEALLDFEGRNKVLY 99          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A061QXC6_9CHLO (Zinc finger-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QXC6_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 6.560e-25
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   52 SCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY 300
            +C +VVG+HPDQATE LVD  LA G PFAVVPCC++ + F  RK A GK V + +D +E+L+ K P+ R   L F+G+N V++
Sbjct:    2 NCSVVVGMHPDQATEPLVDLALALGKPFAVVPCCVHGRSFPGRKTACGKPVVSYEDFIEYLLSKSPDCRSAELPFEGRNKVVF 84          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: C5KTN4_PERM5 (C3H1-type domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KTN4_PERM5)

HSP 1 Score: 103 bits (257), Expect = 5.690e-24
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1
Query:   22 SVEDTQA---LLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY 300
            S++D Q    +LS+  LVVGLH DQATE +VDF LA G PFAVVPCC+Y K F  RKL +G+ V T D+ + ++  K P IR + L F G+N  +Y
Sbjct:  317 SIDDLQTALEVLSNASLVVGLHSDQATERIVDFALAAGKPFAVVPCCVYQKCFPDRKLPNGQLVNTYDEFITYICAKDPRIRTQALGFDGRNIAVY 412          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A7J6SGC6_PEROL (C3H1-type domain-containing protein n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SGC6_PEROL)

HSP 1 Score: 103 bits (257), Expect = 7.630e-24
Identity = 49/96 (51.04%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   22 SVEDTQA---LLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY 300
            S++D +    +L+   LVVGLH DQATE +VDF LA G PFAVVPCC+Y K F  RKL  G+ V T +D + +L  K P IR + L F G+NT +Y
Sbjct:  354 SIDDFETALEVLADASLVVGLHSDQATERIVDFALAAGKPFAVVPCCVYQKCFPDRKLPDGQLVNTYEDFITYLCSKDPRIRTQALGFDGRNTAVY 449          
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Match: A0A7S0PVW9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PVW9_MICPS)

HSP 1 Score: 95.9 bits (237), Expect = 2.450e-23
Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 HTAAIEWSVEDTQA--LLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPCCIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLYWL 306
            H A+  W   D      ++ C ++VG+HPDQATE +VD  +A G PFAVVPCC++ + F  R+ A G  VRT  + V++L+ KHP+ +   L F+G+N V+Y L
Sbjct:   26 HLASEFWGETDGPLGEAIARCDVLVGMHPDQATEPVVDAAIALGKPFAVVPCCVFPELFPARRTADGSPVRTYVEFVDYLVAKHPDAKLAYLPFKGRNRVVYRL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86816.20188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MPS0_9EUKA2.860e-3051.58Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7J6STP5_PEROL1.030e-2652.75Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A7J6QY46_PEROL1.770e-2652.08Uncharacterized protein n=2 Tax=Perkinsus olseni T... [more]
A0A059LGA5_9CHLO1.900e-2652.22Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A7S4IQ74_9EUKA2.660e-2653.68Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A812IQF4_SYMPI4.830e-2550.00Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A061QXC6_9CHLO6.560e-2551.81Zinc finger-containing protein (Fragment) n=1 Tax=... [more]
C5KTN4_PERM55.690e-2451.04C3H1-type domain-containing protein n=1 Tax=Perkin... [more]
A0A7J6SGC6_PEROL7.630e-2451.04C3H1-type domain-containing protein n=4 Tax=Perkin... [more]
A0A7S0PVW9_MICPS2.450e-2343.27Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86816contigM-pyrifera_M_contig86816:428..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score105.5
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog81824.XP_001749199.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BWNU@1,2S2DK@2759,39J1K@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.4108722-CDS-M-pyrifera_M_contig86816:427..7391622816777.4108722-CDS-M-pyrifera_M_contig86816:427..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86816 428..739 +
1692278172.4447565-CDS-M-pyrifera_M_contig86816:427..7391692278172.4447565-CDS-M-pyrifera_M_contig86816:427..739Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86816 428..739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86816.20188.1prot_M-pyrifera_M_contig86816.20188.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86816 428..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86816.20188.1

>prot_M-pyrifera_M_contig86816.20188.1 ID=prot_M-pyrifera_M_contig86816.20188.1|Name=mRNA_M-pyrifera_M_contig86816.20188.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
HTAAIEWSVEDTQALLSSCGLVVGLHPDQATEGLVDFCLATGTPFAVVPC
CIYTKQFSKRKLASGKQVRTVDDLVEHLMEKHPEIRRETLNFQGKNTVLY
WLGP
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mRNA from alignment at M-pyrifera_M_contig86816:428..739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86816.20188.1 ID=mRNA_M-pyrifera_M_contig86816.20188.1|Name=mRNA_M-pyrifera_M_contig86816.20188.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig86816:428..739+ (Macrocystis pyrifera P11B4 male)
CACACGGCAGCCATCGAGTGGAGTGTTGAGGACACGCAGGCCCTCCTCTC TTCGTGTGGCCTGGTGGTGGGCTTGCACCCAGACCAGGCCACAGAGGGAC TCGTGGACTTCTGCCTGGCGACAGGGACCCCCTTCGCCGTAGTGCCGTGC TGCATATACACCAAGCAGTTCTCGAAGCGCAAGCTCGCCAGTGGAAAGCA AGTGCGAACAGTTGATGACCTTGTCGAGCACTTGATGGAGAAACACCCAG AGATTCGACGCGAGACACTGAACTTCCAAGGGAAGAACACAGTGCTCTAT TGGCTGGGGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86816:428..739+

>mRNA_M-pyrifera_M_contig86816.20188.1 ID=mRNA_M-pyrifera_M_contig86816.20188.1|Name=mRNA_M-pyrifera_M_contig86816.20188.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig86816:428..739+ (Macrocystis pyrifera P11B4 male)
CACACGGCAGCCATCGAGTGGAGTGTTGAGGACACGCAGGCCCTCCTCTC
TTCGTGTGGCCTGGTGGTGGGCTTGCACCCAGACCAGGCCACAGAGGGAC
TCGTGGACTTCTGCCTGGCGACAGGGACCCCCTTCGCCGTAGTGCCGTGC
TGCATATACACCAAGCAGTTCTCGAAGCGCAAGCTCGCCAGTGGAAAGCA
AGTGCGAACAGTTGATGACCTTGTCGAGCACTTGATGGAGAAACACCCAG
AGATTCGACGCGAGACACTGAACTTCCAAGGGAAGAACACAGTGCTCTAT
TGGCTGGGGCCTCACACGGCAGCCATCGAGTGGAGTGTTGAGGACACGCA
GGCCCTCCTCTCTTCGTGTGGCCTGGTGGTGGGCTTGCACCCAGACCAGG
CCACAGAGGGACTCGTGGACTTCTGCCTGGCGACAGGGACCCCCTTCGCC
GTAGTGCCGTGCTGCATATACACCAAGCAGTTCTCGAAGCGCAAGCTCGC
CAGTGGAAAGCAAGTGCGAACAGTTGATGACCTTGTCGAGCACTTGATGG
AGAAACACCCAGAGATTCGACGCGAGACACTGAACTTCCAAGGGAAGAAC
ACAGTGCTCTATTGGCTGGGGCCT
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