mRNA_M-pyrifera_M_contig86722.20174.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86722.20174.1
Unique NamemRNA_M-pyrifera_M_contig86722.20174.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A2D6UBN2_9ACTN (DNA-formamidopyrimidine glycosylase n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UBN2_9ACTN)

HSP 1 Score: 201 bits (510), Expect = 1.970e-62
Identity = 97/124 (78.23%), Postives = 105/124 (84.68%), Query Frame = 1 
Query:    1 AFVQRSNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            AFV+RS+RHLKT+LL QRAVAGVGNIYADEALW A INPATRRL R+RAD LVVA+R AL+SGL HGGTTLRDYVDS G  G NQH L CYGR GEPC RCG  LR + +DARTTTWCPVCQAR
Sbjct:  157 AFVKRSDRHLKTILLAQRAVAGVGNIYADEALWDARINPATRRLSRQRADELVVAIRRALESGLAHGGTTLRDYVDSDGARGGNQHELACYGRGGEPCLRCGEELRTQVIDARTTTWCPVCQAR 280
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A7K1Z8R1_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z8R1_9ACTN)

HSP 1 Score: 197 bits (500), Expect = 4.640e-61
Identity = 89/124 (71.77%), Postives = 106/124 (85.48%), Query Frame = 1 
Query:    1 AFVQRSNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            AFV+RS+R++KTLLL QR VAG+GNIYADEA W+A INPA RRL  ERA+RLV  +R AL SG+ +GGTTLRDYVDS GR G NQH LHCYGR+GEPC+RCGT++RRR +DAR+TTWCP CQ+R
Sbjct:  146 AFVKRSDRYVKTLLLSQRPVAGIGNIYADEAFWLARINPAVRRLSPERAERLVEGIRTALDSGIKYGGTTLRDYVDSEGRQGTNQHELHCYGRAGEPCDRCGTIMRRRVLDARSTTWCPTCQSR 269
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A6B1EHR6_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EHR6_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 3.330e-51
Identity = 83/122 (68.03%), Postives = 93/122 (76.23%), Query Frame = 1 
Query:    7 VQRSNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            ++ S R +KT LL QR VAGVGNIYADEALW+AG+NP+ R L R RA  L  A+R AL SGL HGGTTLRDY    G  G+NQH L CYGR+GEPCERCGT LRR+ VDAR TTWCPVCQ R
Sbjct:  150 LRASRRCVKTQLLSQRPVAGVGNIYADEALWLAGVNPSIRHLSRPRAGLLAGAIRTALASGLRHGGTTLRDYAALDGARGSNQHHLRCYGRAGEPCERCGTELRRKVVDARGTTWCPVCQRR 271
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: UPI001D0F4D3E (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D0F4D3E)

HSP 1 Score: 172 bits (436), Expect = 5.090e-51
Identity = 81/122 (66.39%), Postives = 92/122 (75.41%), Query Frame = 1 
Query:    7 VQRSNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            V    R +KT LL QR VAGVGNIYADEALW AG++P  RRL R  ADRL  AVR+ L+ G+DHGGTTLRDYVD+ G TG NQHRL CYGR+G+ C RCGT LR   +DAR+TTWCP CQ R
Sbjct:  178 VNAGRRRIKTALLSQRPVAGVGNIYADEALWRAGVDPRARRLTRAGADRLRDAVREVLREGIDHGGTTLRDYVDADGATGTNQHRLDCYGRAGQECHRCGTTLRGAVLDARSTTWCPTCQPR 299
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A7X6P2F0_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6P2F0_9ACTN)

HSP 1 Score: 170 bits (431), Expect = 1.340e-50
Identity = 80/122 (65.57%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    7 VQRSNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            ++ S RHLKT LL QR +AGVGNIYADEALW+AGI+PA R L R RA  L+ A+R  L +G++HGGTTLRDYVD+ G +G +QH L CYGR+GEPCERCG+ LRR  +DAR TTWC VCQ R
Sbjct:  148 LRSSGRHLKTDLLSQRPIAGVGNIYADEALWLAGIHPADRTLTRSRAAALLEAIRSVLAAGIEHGGTTLRDYVDAEGVSGGHQHHLWCYGRAGEPCERCGSPLRRAVIDARGTTWCGVCQPR 269
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A7K2DCI2_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2DCI2_9ACTN)

HSP 1 Score: 170 bits (431), Expect = 2.200e-50
Identity = 82/119 (68.91%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:   16 SNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            S R +KT LL QR VAGVGNIYADEALW+A INPA R + + RA RL  A+R AL SGL HGGTTLRDY    G +G NQH L CYGR+GEPCERCGT LRRR +DAR TTWCP CQ R
Sbjct:  171 SRRRVKTQLLSQRPVAGVGNIYADEALWLAQINPAVRYVSKPRAGRLADAIRTALTSGLRHGGTTLRDYATLDGSSGRNQHHLRCYGRAGEPCERCGTELRRRIIDARGTTWCPTCQRR 289
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BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A6N8YHF8_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase (Fragment) n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YHF8_9ACTN)

HSP 1 Score: 167 bits (423), Expect = 5.780e-50
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:   16 SNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            S R +KT LL QR VAGVGNIYADEALW+A INPA R + + RA RL  A+R AL+SGL HGGTTLRDY    G +G NQH L CYGR+GEPCERCG+ LRRR +DAR TTWCP CQ R
Sbjct:  107 SRRCVKTQLLSQRPVAGVGNIYADEALWLAQINPAARYVSKPRAHRLADAIRVALKSGLRHGGTTLRDYAALDGSSGRNQHHLRCYGRAGEPCERCGSELRRRIIDARGTTWCPACQRR 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A7K2E4M9_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E4M9_9ACTN)

HSP 1 Score: 169 bits (429), Expect = 6.240e-50
Identity = 82/119 (68.91%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:   16 SNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            S R +KT LL QR VAGVGNIYADEALW+A INPA R + R RA RL  A+R AL SGL HGGTTLRDY    G +G NQH L CYGR+GEPCERCG  LRRR +DAR TTWCP CQ R
Sbjct:  184 SRRRVKTQLLSQRPVAGVGNIYADEALWLARINPAVRYVSRPRAGRLADAIRTALTSGLRHGGTTLRDYATLDGSSGRNQHHLRCYGRAGEPCERCGAELRRRIIDARGTTWCPTCQRR 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A6B0ZK81_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0ZK81_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 2.310e-49
Identity = 82/119 (68.91%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:   16 SNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            S R +KT LL QR VAGVGNIYADEALW+A INPA R + R RA  L  A+R  L+SGL HGGTTLRDY    G +G NQH L CYGR+GEPCERCGT LRRR +DAR TTWCPVCQ R
Sbjct:  181 SRRCVKTQLLSQRPVAGVGNIYADEALWLAQINPAARYVSRPRAGWLADAIRTVLESGLRHGGTTLRDYAALDGSSGRNQHHLRCYGRAGEPCERCGTELRRRIIDARGTTWCPVCQRR 299
[Close]
BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Match: A0A7C7SC76_9ACTN (Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7C7SC76_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 1.300e-48
Identity = 76/119 (63.87%), Postives = 90/119 (75.63%), Query Frame = 1 
Query:   16 SNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERADRLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCERCGTVLRRREVDARTTTWCPVCQAR 372
            S+R +KT LL QR +AG+GNIYADEALW +GI+P  RRLG ER++RL+V +R  L   LDHGGTTLRDY    G +G NQHRL CYGRSG+PC  CG +L  R +D RTTTWCP CQAR
Sbjct:  155 SSRRVKTKLLSQRPIAGIGNIYADEALWRSGIHPGARRLGPERSERLLVHLRAVLGEALDHGGTTLRDYRTPDGGSGRNQHRLDCYGRSGQPCRSCGDLLTSRSIDQRTTTWCPTCQAR 273
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86722.20174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6UBN2_9ACTN1.970e-6278.23DNA-formamidopyrimidine glycosylase n=7 Tax=Acidim... [more]
A0A7K1Z8R1_9ACTN4.640e-6171.77Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A6B1EHR6_9ACTN3.330e-5168.03Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
UPI001D0F4D3E5.090e-5166.39bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A7X6P2F0_9ACTN1.340e-5065.57Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A7K2DCI2_9ACTN2.200e-5068.91Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A6N8YHF8_9ACTN5.780e-5068.07Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A7K2E4M9_9ACTN6.240e-5068.91Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A6B0ZK81_9ACTN2.310e-4968.91Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A7C7SC76_9ACTN1.300e-4863.87Bifunctional DNA-formamidopyrimidine glycosylase/D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86722contigM-pyrifera_M_contig86722:469..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score134.0
Seed ortholog evalue4.7e-29
Seed eggNOG ortholog1229780.BN381_90081
Preferred namefpg
KEGG koko:K10563
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000702,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008534,GO:0009987,GO:0016020,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034039,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0071944,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363
EggNOG free text desc.Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
EggNOG OGs2GJNT@201174,3UWHS@52018,COG0266@1,COG0266@2
EC3.2.2.23,4.2.99.18
COG Functional cat.L
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.641131-CDS-M-pyrifera_M_contig86722:468..8431622816776.641131-CDS-M-pyrifera_M_contig86722:468..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86722 469..843 -
1692278171.9253714-CDS-M-pyrifera_M_contig86722:468..8431692278171.9253714-CDS-M-pyrifera_M_contig86722:468..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86722 469..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86722.20174.1prot_M-pyrifera_M_contig86722.20174.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86722 469..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86722.20174.1

>prot_M-pyrifera_M_contig86722.20174.1 ID=prot_M-pyrifera_M_contig86722.20174.1|Name=mRNA_M-pyrifera_M_contig86722.20174.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
AFVQRSNRHLKTLLLGQRAVAGVGNIYADEALWMAGINPATRRLGRERAD
RLVVAVRDALQSGLDHGGTTLRDYVDSTGRTGANQHRLHCYGRSGEPCER
CGTVLRRREVDARTTTWCPVCQAR*
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mRNA from alignment at M-pyrifera_M_contig86722:469..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86722.20174.1 ID=mRNA_M-pyrifera_M_contig86722.20174.1|Name=mRNA_M-pyrifera_M_contig86722.20174.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig86722:469..843- (Macrocystis pyrifera P11B4 male)
GCGTTCGTGCAGCGCAGCAATCGCCACCTGAAGACCCTGTTGTTGGGTCA
ACGGGCCGTCGCCGGTGTGGGCAACATCTACGCCGACGAGGCTCTCTGGA
TGGCCGGCATCAATCCGGCCACGCGGCGACTCGGACGCGAGAGAGCGGAC
CGCTTGGTCGTCGCCGTGCGCGACGCTCTGCAGTCGGGCCTCGATCACGG
CGGCACGACCCTGCGGGACTATGTCGACTCCACCGGACGAACCGGTGCCA
ACCAGCACCGGCTGCACTGCTACGGGCGCTCGGGTGAGCCCTGCGAACGG
TGCGGGACCGTGCTGCGACGCCGAGAAGTCGACGCGCGCACGACCACCTG
GTGTCCGGTGTGTCAGGCCCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86722:469..843-

>mRNA_M-pyrifera_M_contig86722.20174.1 ID=mRNA_M-pyrifera_M_contig86722.20174.1|Name=mRNA_M-pyrifera_M_contig86722.20174.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig86722:469..843- (Macrocystis pyrifera P11B4 male)
GCGTTCGTGCAGCGCAGCAATCGCCACCTGAAGACCCTGTTGTTGGGTCA
ACGGGCCGTCGCCGGTGTGGGCAACATCTACGCCGACGAGGCTCTCTGGA
TGGCCGGCATCAATCCGGCCACGCGGCGACTCGGACGCGAGAGAGCGGAC
CGCTTGGTCGTCGCCGTGCGCGACGCTCTGCAGTCGGGCCTCGATCACGG
CGGCACGACCCTGCGGGACTATGTCGACTCCACCGGACGAACCGGTGCCA
ACCAGCACCGGCTGCACTGCTACGGGCGCTCGGGTGAGCCCTGCGAACGG
TGCGGGACCGTGCTGCGACGCCGAGAAGTCGACGCGCGCACGACCACCTG
GTGTCCGGTGTGTCAGGCCCGCTGAGCGTTCGTGCAGCGCAGCAATCGCC
ACCTGAAGACCCTGTTGTTGGGTCAACGGGCCGTCGCCGGTGTGGGCAAC
ATCTACGCCGACGAGGCTCTCTGGATGGCCGGCATCAATCCGGCCACGCG
GCGACTCGGACGCGAGAGAGCGGACCGCTTGGTCGTCGCCGTGCGCGACG
CTCTGCAGTCGGGCCTCGATCACGGCGGCACGACCCTGCGGGACTATGTC
GACTCCACCGGACGAACCGGTGCCAACCAGCACCGGCTGCACTGCTACGG
GCGCTCGGGTGAGCCCTGCGAACGGTGCGGGACCGTGCTGCGACGCCGAG
AAGTCGACGCGCGCACGACCACCTGGTGTCCGGTGTGTCAGGCCCGCTGA
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