mRNA_M-pyrifera_M_contig86720.20172.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86720.20172.1
Unique NamemRNA_M-pyrifera_M_contig86720.20172.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig86720.20172.1 vs. uniprot
Match: A0A482UN69_9ARCH (START domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UN69_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 4.020e-21
Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:    1 ADQVADAITDLELYASWDRSWEQVQPVR-LLDHHNQILRFVADQPPPPVSNILTQRDFVMSRDFRRDPDTGTFVVLFRNVQHRRSPPLPDKIRANTLGVIGFVVRSV 318
            A    DAIT LE Y  WDR+W  VQP+   LD  N    F+AD PPPP S ++  RDFVM R   RDP  G  V + RN  HR  P  P  IR  TL  +GF+V  V
Sbjct:   66 AQDAFDAITRLEKYRRWDRTWHLVQPIGDPLDAFNAAYYFIADSPPPPYSYLIVARDFVMLRFTYRDPYAGINVDVLRNACHRAKPADPVYIRGETLSCVGFMVTPV 172
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86720.20172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A482UN69_9ARCH4.020e-2147.66START domain-containing protein (Fragment) n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86720contigM-pyrifera_M_contig86720:9..332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816776.5816042-CDS-M-pyrifera_M_contig86720:8..3321622816776.5816042-CDS-M-pyrifera_M_contig86720:8..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86720 9..332 -
1692278171.90122-CDS-M-pyrifera_M_contig86720:8..3321692278171.90122-CDS-M-pyrifera_M_contig86720:8..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86720 9..332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86720.20172.1prot_M-pyrifera_M_contig86720.20172.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86720 9..332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86720.20172.1

>prot_M-pyrifera_M_contig86720.20172.1 ID=prot_M-pyrifera_M_contig86720.20172.1|Name=mRNA_M-pyrifera_M_contig86720.20172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
ADQVADAITDLELYASWDRSWEQVQPVRLLDHHNQILRFVADQPPPPVSN
ILTQRDFVMSRDFRRDPDTGTFVVLFRNVQHRRSPPLPDKIRANTLGVIG
FVVRSVPS
back to top

mRNA from alignment at M-pyrifera_M_contig86720:9..332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86720.20172.1 ID=mRNA_M-pyrifera_M_contig86720.20172.1|Name=mRNA_M-pyrifera_M_contig86720.20172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig86720:9..332- (Macrocystis pyrifera P11B4 male)
GCAGATCAAGTGGCTGATGCAATTACTGATTTGGAGTTGTATGCATCATG
GGATCGGTCTTGGGAACAAGTGCAACCTGTTCGTCTTCTAGATCATCACA
ATCAGATTTTGAGGTTTGTTGCTGATCAACCTCCTCCACCGGTGTCCAAC
ATCTTGACACAGCGTGACTTTGTCATGTCGAGAGACTTTCGAAGGGACCC
CGACACTGGGACTTTTGTAGTCCTTTTTCGCAATGTACAACACCGTCGCT
CTCCACCTTTACCGGACAAAATTCGAGCCAATACTTTGGGAGTGATTGGA
TTTGTTGTGCGATCAGTCCCAAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86720:9..332-

>mRNA_M-pyrifera_M_contig86720.20172.1 ID=mRNA_M-pyrifera_M_contig86720.20172.1|Name=mRNA_M-pyrifera_M_contig86720.20172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig86720:9..332- (Macrocystis pyrifera P11B4 male)
GCAGATCAAGTGGCTGATGCAATTACTGATTTGGAGTTGTATGCATCATG
GGATCGGTCTTGGGAACAAGTGCAACCTGTTCGTCTTCTAGATCATCACA
ATCAGATTTTGAGGTTTGTTGCTGATCAACCTCCTCCACCGGTGTCCAAC
ATCTTGACACAGCGTGACTTTGTCATGTCGAGAGACTTTCGAAGGGACCC
CGACACTGGGACTTTTGTAGTCCTTTTTCGCAATGTACAACACCGTCGCT
CTCCACCTTTACCGGACAAAATTCGAGCCAATACTTTGGGAGTGATTGGA
TTTGTTGTGCGATCAGTCCCAAGCGCAGATCAAGTGGCTGATGCAATTAC
TGATTTGGAGTTGTATGCATCATGGGATCGGTCTTGGGAACAAGTGCAAC
CTGTTCGTCTTCTAGATCATCACAATCAGATTTTGAGGTTTGTTGCTGAT
CAACCTCCTCCACCGGTGTCCAACATCTTGACACAGCGTGACTTTGTCAT
GTCGAGAGACTTTCGAAGGGACCCCGACACTGGGACTTTTGTAGTCCTTT
TTCGCAATGTACAACACCGTCGCTCTCCACCTTTACCGGACAAAATTCGA
GCCAATACTTTGGGAGTGATTGGATTTGTTGTGCGATCAGTCCCAAGC
back to top