mRNA_M-pyrifera_M_contig8669.20161.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8669.20161.1
Unique NamemRNA_M-pyrifera_M_contig8669.20161.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8669.20161.1 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.450e-50
Identity = 92/130 (70.77%), Postives = 109/130 (83.85%), Query Frame = 1 
Query:  385 MRAAQGVRTNMASYRAVMYAFSRAGDWASALGLYEDARREELQPSTGDLRTLVQVCGEAEQHERALSLLEEMRSEGMGMRKTGEKLWWVFNACGNKSIKERAWSIMEVEETRERVRLRAERNAQNGLPSD 774
            M +A GV TNM+S+RA M A+ RAGDWASAL L EDARR +L+P+T DLRT+V+ CG+AEQHERALSLLEEMRSEGM +R+TGEKLWWVFN C +K +KERAW +MEVE+TRERVRLRAERNAQ     +
Sbjct:  545 MCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTMVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQTRERVRLRAERNAQKAAAEE 674
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8669.20161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH7_ECTSI1.450e-5070.77PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8669contigM-pyrifera_M_contig8669:4855..7936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue2e-45
Seed eggNOG ortholog2880.D7FJH7
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-04_006170.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Exons4
Model size1150
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8669.20161.1prot_M-pyrifera_M_contig8669.20161.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8669 4861..7581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.9627602-UTR-M-pyrifera_M_contig8669:4854..48601622816775.9627602-UTR-M-pyrifera_M_contig8669:4854..4860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8669 4855..4860 +
1692278171.5133529-UTR-M-pyrifera_M_contig8669:4854..48601692278171.5133529-UTR-M-pyrifera_M_contig8669:4854..4860Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8669 4855..4860 +
1622816776.0208027-UTR-M-pyrifera_M_contig8669:7581..79361622816776.0208027-UTR-M-pyrifera_M_contig8669:7581..7936Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8669 7582..7936 +
1692278171.580073-UTR-M-pyrifera_M_contig8669:7581..79361692278171.580073-UTR-M-pyrifera_M_contig8669:7581..7936Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8669 7582..7936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.974903-CDS-M-pyrifera_M_contig8669:4860..50761622816775.974903-CDS-M-pyrifera_M_contig8669:4860..5076Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 4861..5076 +
1692278171.5285082-CDS-M-pyrifera_M_contig8669:4860..50761692278171.5285082-CDS-M-pyrifera_M_contig8669:4860..5076Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 4861..5076 +
1622816775.9873557-CDS-M-pyrifera_M_contig8669:5476..56081622816775.9873557-CDS-M-pyrifera_M_contig8669:5476..5608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 5477..5608 +
1692278171.5392077-CDS-M-pyrifera_M_contig8669:5476..56081692278171.5392077-CDS-M-pyrifera_M_contig8669:5476..5608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 5477..5608 +
1622816775.9984286-CDS-M-pyrifera_M_contig8669:6016..62081622816775.9984286-CDS-M-pyrifera_M_contig8669:6016..6208Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 6017..6208 +
1692278171.5496194-CDS-M-pyrifera_M_contig8669:6016..62081692278171.5496194-CDS-M-pyrifera_M_contig8669:6016..6208Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 6017..6208 +
1622816776.009017-CDS-M-pyrifera_M_contig8669:7332..75811622816776.009017-CDS-M-pyrifera_M_contig8669:7332..7581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 7333..7581 +
1692278171.567497-CDS-M-pyrifera_M_contig8669:7332..75811692278171.567497-CDS-M-pyrifera_M_contig8669:7332..7581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8669 7333..7581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8669.20161.1

>prot_M-pyrifera_M_contig8669.20161.1 ID=prot_M-pyrifera_M_contig8669.20161.1|Name=mRNA_M-pyrifera_M_contig8669.20161.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=263bp
MALKACAAAGRWEKTLEMLGDMRASGVNRSESSFVVAMKACGDAGRWEEA
LSLMDDMRSDGMPPMETAYTTAMKACGSSGEWERALGLFHEMCDTGIPPT
ELCFTAVIKACAKADETEKALSLLQGMRAAQGVRTNMASYRAVMYAFSRA
GDWASALGLYEDARREELQPSTGDLRTLVQVCGEAEQHERALSLLEEMRS
EGMGMRKTGEKLWWVFNACGNKSIKERAWSIMEVEETRERVRLRAERNAQ
NGLPSDDVPHGA*
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mRNA from alignment at M-pyrifera_M_contig8669:4855..7936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8669.20161.1 ID=mRNA_M-pyrifera_M_contig8669.20161.1|Name=mRNA_M-pyrifera_M_contig8669.20161.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3082bp|location=Sequence derived from alignment at M-pyrifera_M_contig8669:4855..7936+ (Macrocystis pyrifera P11B4 male)
AACGTGATGGCGCTCAAGGCGTGCGCCGCCGCCGGGCGCTGGGAGAAAAC
CCTGGAAATGCTGGGGGACATGAGGGCCTCCGGTGTGAACCGGTCGGAGA
GCTCATTTGTGGTGGCCATGAAAGCTTGCGGCGATGCTGGTCGCTGGGAG
GAGGCGCTAAGCTTGATGGATGATATGCGCAGTGATGGGATGCCACCGAT
GGAGACAGCGTACACCACCGCGGTGAGAAATCACCACCGGTGGTGACGGC
GGCACCGGGGTTAGAGTTTTGGTTTGCGAAAAAACAAACGATTATGGAAC
TCCGAGGTTTCGGTTTTCTTTCCTTGGCCTGATTTTGTTTTCGGACGACA
AGGGCCAGGGTGGTGGTGCTGTTGTTCGAACAACAGAAGTCAGGATGTTG
TGGTGGTGGTGCTTGCTCGAAGTTTTCTGCGGGACGAACCTTCTAGGATG
AATGCATCCACGCTGATAGGCCTCACGGAGCAGGGAGGGTCACTTTTGAG
CACTCGTTTGTTAGCGATAGATACCTCCTTGGTTAGGTTTCTGCGATGTT
TTGGGTAGAGTGGCCTCTTAAGTACGGGTGGGACCTACCCTATGTGCCCC
TTCCGTGCTTTGATACTTGCAGATGAAAGCGTGCGGGAGCTCCGGCGAGT
GGGAGCGGGCGTTAGGCTTGTTCCACGAGATGTGTGACACAGGCATCCCA
CCGACCGAGCTGTGCTTCACCGCCGTTATCAAGGCGTGCGCGAAGGCCGA
TGAGGTACGCAGGCACTAGGACATGCTCCGCCGCAGGGCACGTTTACCAG
CGAGTGGGGCGCAGACAATTTCTTCCCCAAAGCCGTTTTTGATCAGAGTG
CACCCACCGCGTTGGATGCATATCGTGATAGCACGCGGGCACACACGACG
TTACTGGTCGTCGTCCGCAGCTGGCTACTTCACGGCTCCAGTGCTGACGC
GCTGTTAATCTTGTTAGCTGAAAATGAACGCGTTACGGCTTTGCACCATG
CTTGCGACCGCCTCTAAGTTCATCACGTACAAAGCATATTGTCAGCCGCG
GAGGTAACTTCAACTACTGTACAGTAGTTGATTTTTTTTTTGTCTCGGTA
CCTTAATTTCCCCTGTCGACGCTCCCCGGCAATTCCCTTCCGCTCTTCAC
GGGTTAAAACAGACGGAGAAGGCGTTGTCGCTCCTGCAAGGAATGCGCGC
CGCGCAGGGCGTTCGCACGAACATGGCGAGCTACCGTGCGGTCATGTATG
CCTTCAGCAGGGCTGGGGACTGGGCTTCCGCTCTGGGGCTTTATGAGGAC
GCTCGAAGGGAGGAGCTGCAGCCGTCTACAGGAGACCTACGTACCTTGGT
GCAGGTGAATTGCCGTATCACGACCAGAGGAATAGCTCCGAAAACGGGGC
GAGTATATTCAGTAGTGCAGGGTTTGATTCGGCGAGGACAGATCCAAAAG
GAGGAAGTGATTTAATTTCTTGTTTCTGTGGTTCAAGGAGGACAAATGCC
GTTGTATATATAACCTGGATATGGACCTGCTTTTCTTCTGGGCAAGCACG
TTAGGAGACAGCGTACCATACCCGGTACCAGGTATGTATCACCGCTACTA
TGCCCCAACCCAGGAGTCCCCCGCTGGCCAAACAGCGATTGCTACGAGAG
GGAACGCTGTTAAGAAGTGCACTTCAGTGATGGGTAGTCGCACACTGTCG
CTGTTCTGCCACATTGGAAATCATGCACACGTCGGACAGTTCGTCGATTG
CCACAGTTCATGGTTTAGATCACCCAGGGCAGACATATTCCTGATCTGTA
TGATCTGTATGATCTGTATGATCTGTATGATCTGTATGTTGTAGCTCATG
TTGCCTGGTGGGAGCCGTATAATCTGCATGATCTAGCACATGTTTCCGTG
GTAACATTTGTACTATACAAGTCCGGCACAAGCTCTCACAATGGTAGATG
AGTAAGTAGATGATCTATCTGATCTGGAGGTAGATAGATCATGACCTGTC
CGAGCTGCGGAAAACTGAACAGTGAATCCTACGATTCAGACCCCAAAAAA
AGTGGGTAAAAGTACTCTGCAAAAGTGTCACTTGCAGGTTGTTAGTCTAT
TTTGAGACCTTCAGAACTACATGTACCCGGCGCGAACGGGAGTTGCGGTT
ACCATGTTCGCGCTTACTTTACACATTTTTTAACGCTGTATACCATGTAA
TATCTGGTATACTTTGTACGCATACTTGGGACCCCGAACAGTTATGCGTT
CCCCAGGTACATAAGCCCAACTTACGCATCCCAGCAACAACAAAATGATT
CCCCCCTAACCCCCATGAGGGTCTGTCATATGGTCATACGACTGCGGCCA
CGCATGATGTCGAGTACACCCCCCCTCCCATGCATGGTATCGAGTACACT
CCCCCCCCCCCCAATGTATGACATGAGTAGAGCCCCCCCGCCAAAATCTC
GCCCTCCCAACGCTTTTCTGCTCTCCAGGTGTGCGGAGAAGCCGAGCAGC
ACGAACGGGCATTGTCGTTGCTTGAAGAAATGCGTTCAGAGGGCATGGGC
ATGCGCAAGACGGGCGAGAAGTTGTGGTGGGTCTTCAACGCGTGTGGGAA
CAAGTCAATAAAGGAAAGGGCGTGGTCGATCATGGAGGTGGAGGAAACGC
GCGAGCGCGTGAGGCTGAGAGCCGAGCGCAATGCCCAGAACGGTTTACCG
TCGGATGATGTTCCTCATGGCGCTTGAGGGAGACTTGTATTTTTGCTCGG
GTGTTCCTGACGGAACTTGAGCGAGATATTACGTTTTTGCTGCTTGTGCG
TGCCTGAGTTGAGACTCGAGACCGATTTATTTATTTTTTGAGAGGTTGGT
CTGCGTCGCGGGCAGTCATGCTTTGGTTAGACTTTTTCTTTGTTGGGTGA
GTGTTGCTGACGGCTTCAGACATCCCACGGACAAAGCAGCACGTTCTAGT
TTTACTACAGTTTGTAGAACTGAGGTATGTGGTGGGCGAAGGTGCTAGAA
GCGCCGGTTTTATTTTTTACCCCTGCTCCTCGGGGCAGCTTGGACAGGCA
ACAAAATGAGAAAATGAAATCCGCTCACGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8669:4855..7936+

>mRNA_M-pyrifera_M_contig8669.20161.1 ID=mRNA_M-pyrifera_M_contig8669.20161.1|Name=mRNA_M-pyrifera_M_contig8669.20161.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1578bp|location=Sequence derived from alignment at M-pyrifera_M_contig8669:4855..7936+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTCAAGGCGTGCGCCGCCGCCGGGCGCTGGGAGAAAACCCTGGA
AATGCTGGGGGACATGAGGGCCTCCGGTGTGAACCGGTCGGAGAGCTCAT
TTGTGGTGGCCATGAAAGCTTGCGGCGATGCTGGTCGCTGGGAGGAGGCG
CTAAGCTTGATGGATGATATGCGCAGTGATGGGATGCCACCGATGGAGAC
AGCGTACACCACCGCGATGGCGCTCAAGGCGTGCGCCGCCGCCGGGCGCT
GGGAGAAAACCCTGGAAATGCTGGGGGACATGAGGGCCTCCGGTGTGAAC
CGGTCGGAGAGCTCATTTGTGGTGGCCATGAAAGCTTGCGGCGATGCTGG
TCGCTGGGAGGAGGCGCTAAGCTTGATGGATGATATGCGCAGTGATGGGA
TGCCACCGATGGAGACAGCGTACACCACCGCGATGAAAGCGTGCGGGAGC
TCCGGCGAGTGGGAGCGGGCGTTAGGCTTGTTCCACGAGATGTGTGACAC
AGGCATCCCACCGACCGAGCTGTGCTTCACCGCCGTTATCAAGGCGTGCG
CGAAGGCCGATGAGATGAAAGCGTGCGGGAGCTCCGGCGAGTGGGAGCGG
GCGTTAGGCTTGTTCCACGAGATGTGTGACACAGGCATCCCACCGACCGA
GCTGTGCTTCACCGCCGTTATCAAGGCGTGCGCGAAGGCCGATGAGACGG
AGAAGGCGTTGTCGCTCCTGCAAGGAATGCGCGCCGCGCAGGGCGTTCGC
ACGAACATGGCGAGCTACCGTGCGGTCATGTATGCCTTCAGCAGGGCTGG
GGACTGGGCTTCCGCTCTGGGGCTTTATGAGGACGCTCGAAGGGAGGAGC
TGCAGCCGTCTACAGGAGACCTACGTACCTTGGTGCAGACGGAGAAGGCG
TTGTCGCTCCTGCAAGGAATGCGCGCCGCGCAGGGCGTTCGCACGAACAT
GGCGAGCTACCGTGCGGTCATGTATGCCTTCAGCAGGGCTGGGGACTGGG
CTTCCGCTCTGGGGCTTTATGAGGACGCTCGAAGGGAGGAGCTGCAGCCG
TCTACAGGAGACCTACGTACCTTGGTGCAGGTGTGCGGAGAAGCCGAGCA
GCACGAACGGGCATTGTCGTTGCTTGAAGAAATGCGTTCAGAGGGCATGG
GCATGCGCAAGACGGGCGAGAAGTTGTGGTGGGTCTTCAACGCGTGTGGG
AACAAGTCAATAAAGGAAAGGGCGTGGTCGATCATGGAGGTGGAGGAAAC
GCGCGAGCGCGTGAGGCTGAGAGCCGAGCGCAATGCCCAGAACGGTTTAC
CGTCGGATGATGTTCCTCATGGCGCTTGAGTGTGCGGAGAAGCCGAGCAG
CACGAACGGGCATTGTCGTTGCTTGAAGAAATGCGTTCAGAGGGCATGGG
CATGCGCAAGACGGGCGAGAAGTTGTGGTGGGTCTTCAACGCGTGTGGGA
ACAAGTCAATAAAGGAAAGGGCGTGGTCGATCATGGAGGTGGAGGAAACG
CGCGAGCGCGTGAGGCTGAGAGCCGAGCGCAATGCCCAGAACGGTTTACC
GTCGGATGATGTTCCTCATGGCGCTTGA
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