mRNA_M-pyrifera_M_contig8667.20160.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8667.20160.1
Unique NamemRNA_M-pyrifera_M_contig8667.20160.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8667.20160.1 vs. uniprot
Match: A0A6H5JH29_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH29_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.610e-16
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   16 EGRMTVRILDVKGQIYKLVVRPETTVHELKTRLVEEAGVEIARQRIIYGGKV 171
            +GRMTVR+LDV+GQ Y L V PET+V ELK  LV+ AGVE+ RQRII+GGKV
Sbjct:   80 DGRMTVRVLDVRGQFYPLRVTPETSVRELKLMLVDAAGVEVPRQRIIHGGKV 131
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BLAST of mRNA_M-pyrifera_M_contig8667.20160.1 vs. uniprot
Match: D8LJ71_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ71_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.950e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   16 EGRMTVRILDVKGQIYKLVVRPETTVHELKTRLVEEAGVEIARQRIIYGGKV 171
            +GRMTVR+LDV+GQ Y L V PET+V ELK  LV+ AGVE+ RQRII+GGK+
Sbjct:   81 DGRMTVRVLDVRGQFYPLRVTPETSVRELKLMLVDAAGVEVPRQRIIHGGKM 132
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8667.20160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH29_9PHAE8.610e-1669.23Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D8LJ71_ECTSI4.950e-1467.31Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8667contigM-pyrifera_M_contig8667:10846..11016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.2e-09
Seed eggNOG ortholog2880.D8LJ71
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Ubiquitin homologues
EggNOG OGs2E9AU@1,2SFPK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.9098444-UTR-M-pyrifera_M_contig8667:10845..108691622816775.9098444-UTR-M-pyrifera_M_contig8667:10845..10869Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8667 10846..10869 +
1692278171.482385-UTR-M-pyrifera_M_contig8667:10845..108691692278171.482385-UTR-M-pyrifera_M_contig8667:10845..10869Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8667 10846..10869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.9249272-CDS-M-pyrifera_M_contig8667:10869..110161622816775.9249272-CDS-M-pyrifera_M_contig8667:10869..11016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8667 10870..11016 +
1692278171.4989514-CDS-M-pyrifera_M_contig8667:10869..110161692278171.4989514-CDS-M-pyrifera_M_contig8667:10869..11016Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8667 10870..11016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8667.20160.1prot_M-pyrifera_M_contig8667.20160.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8667 10870..11016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8667.20160.1

>prot_M-pyrifera_M_contig8667.20160.1 ID=prot_M-pyrifera_M_contig8667.20160.1|Name=mRNA_M-pyrifera_M_contig8667.20160.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MTVRILDVKGQIYKLVVRPETTVHELKTRLVEEAGVEIARQRIIYGGKV
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mRNA from alignment at M-pyrifera_M_contig8667:10846..11016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8667.20160.1 ID=mRNA_M-pyrifera_M_contig8667.20160.1|Name=mRNA_M-pyrifera_M_contig8667.20160.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig8667:10846..11016+ (Macrocystis pyrifera P11B4 male)
GCTGGTGATGCTTCCGAGGGTAGGATGACTGTCAGGATACTGGATGTGAA
GGGGCAGATATACAAGCTGGTTGTGCGACCAGAGACCACAGTGCACGAGC
TCAAGACGAGGCTTGTCGAGGAGGCCGGGGTGGAAATCGCGAGACAGCGG
ATCATCTACGGCGGAAAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8667:10846..11016+

>mRNA_M-pyrifera_M_contig8667.20160.1 ID=mRNA_M-pyrifera_M_contig8667.20160.1|Name=mRNA_M-pyrifera_M_contig8667.20160.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig8667:10846..11016+ (Macrocystis pyrifera P11B4 male)
ATGACTGTCAGGATACTGGATGTGAAGGGGCAGATATACAAGCTGGTTGT
GCGACCAGAGACCACAGTGCACGAGCTCAAGACGAGGCTTGTCGAGGAGG
CCGGGGTGGAAATCGCGAGACAGCGGATCATCTACGGCGGAAAGGTAATG
ACTGTCAGGATACTGGATGTGAAGGGGCAGATATACAAGCTGGTTGTGCG
ACCAGAGACCACAGTGCACGAGCTCAAGACGAGGCTTGTCGAGGAGGCCG
GGGTGGAAATCGCGAGACAGCGGATCATCTACGGCGGAAAGGTA
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