mRNA_M-pyrifera_M_contig86641.20155.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86641.20155.1
Unique NamemRNA_M-pyrifera_M_contig86641.20155.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: A0A5A8DRH8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRH8_CAFRO)

HSP 1 Score: 159 bits (403), Expect = 4.170e-46
Identity = 78/139 (56.12%), Postives = 104/139 (74.82%), Query Frame = 1 
Query:   64 QTEHLTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLEERGEDVA 480
            +T+++ + GR +R DIWDTAGQERF VIT+AYY  +HGIVL YDA+E  E+SF +I+YWM  IR+HA     +VL+GNK+DK   K +S  RG+A A+E+GV FFETSAK+G NVTEAF+ VA+E + + L E G  V+
Sbjct:   83 ETQYVELEGRNIRVDIWDTAGQERFHVITQAYYAGAHGIVLAYDASEAGETSFNNIRYWMNAIREHADAHCVKVLLGNKVDK-APKAISHARGKAVADEYGVGFFETSAKSGANVTEAFHSVARECVLKALAEEGVSVS 220
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: A0A813AFS2_9DINO (RABE1D protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AFS2_9DINO)

HSP 1 Score: 142 bits (357), Expect = 5.450e-38
Identity = 69/131 (52.67%), Postives = 95/131 (72.52%), Query Frame = 1 
Query:   64 QTEHLTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVL 456
            + E L I G+RV+C +WDTAGQ+ F VIT+AYYK +HGIVLVYDA+E D++SF ++QYWM+NI KHASP   +VL+ NK+D    + V+ + GRAA + +G+ +FE SAK+G NV   F+ VA   +R  L
Sbjct:  182 KAEMLDIQGQRVKCQMWDTAGQQDFHVITQAYYKGAHGIVLVYDASEQDQASFHNMQYWMDNISKHASPRVHKVLVANKVDLP--RGVTADIGRAAGQHYGIEYFECSAKSGLNVEHVFHSVAAACVRSQL 310
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: C1E6E1_MICCC (Ras-related gtp-binding protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6E1_MICCC)

HSP 1 Score: 137 bits (345), Expect = 6.980e-38
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:   88 GRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAK 435
            G+RV+  IWDTAGQERFR IT AYY+ +HGI+L YD    DE SF +++ WM NI +HAS   ++VL+GNK D +  + +STE+G A A+EFG+PFFETSAK   NV +AF+ +A+
Sbjct:   57 GKRVKLQIWDTAGQERFRTITNAYYRGAHGILLTYDVT--DEGSFNNVRNWMRNIEQHASDGVSKVLVGNKSDAEEKRVISTEQGEALAKEFGIPFFETSAKANTNVNDAFFAIAR 170
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: D8QMU7_SELML (Rab family GTPase n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QMU7_SELML)

HSP 1 Score: 136 bits (343), Expect = 2.360e-37
Identity = 69/129 (53.49%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:   76 LTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKR-VSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLE 459
            + + GRRV+  +WDTAGQERFR IT AYY+ + GI+LVYD    DESSF +I+ W++NI ++AS   +RVL+GNK D    KR V+T +G+A A E+G+ FFETSAKTG+NV E F+ +A++  RR+ E
Sbjct:   58 IELDGRRVKLQVWDTAGQERFRTITTAYYRGAMGIILVYDVT--DESSFNNIRNWVKNIEQNASENVSRVLVGNKADMDESKRAVTTAQGQALANEYGIRFFETSAKTGQNVEETFFAIARDIKRRLEE 184
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: A0A7S0SFC4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFC4_9CHLO)

HSP 1 Score: 135 bits (339), Expect = 3.270e-37
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = 1 
Query:   88 GRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRV 453
            G+RV+  IWDTAGQERFR IT AYY+ + GI+LVYD    DE+SF +I+ WM NI +HAS T  ++L+GNK D    + + T RG+A A+EFG+PFFETSAK    V EAF+ VA+E  +R+
Sbjct:   57 GKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT--DETSFNNIRNWMRNIEQHASETVNKILVGNKCDMDDKRVIPTARGQALADEFGIPFFETSAKANLKVEEAFFSVAREIKQRL 176
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: UPI0009017E4D (ras-related protein RABE1c-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009017E4D)

HSP 1 Score: 135 bits (339), Expect = 7.200e-37
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = 1 
Query:   76 LTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRV-STERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLE 459
            + + G+R++  IWDTAGQERFR IT AYY+ + GI+LVYD    DESSF++I+ WM+NI +HAS T  ++LIGNK D    K+V  T RG+A A+E+GV FFETSAKTG NV + F+ +A +  +R+ E
Sbjct:   52 IELDGKRMKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT--DESSFDNIRNWMKNIEQHASDTVNKILIGNKADMDESKKVVPTSRGQALADEYGVKFFETSAKTGYNVEQGFFAIAGDIKQRLAE 178
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: Q019D2_OSTTA (Small GTPase superfamily, Rab type n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q019D2_OSTTA)

HSP 1 Score: 135 bits (339), Expect = 7.600e-37
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:   82 IAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRV-STERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLEERG 468
            + G+RV+  IWDTAGQERFR IT AYY+ + GI+LVYD +  DE SFE+++ WM NI +HAS    ++LIGNK D K  KRV S  RG+A A+EFG+PFFETSAK+  NV +AF  +A +   R+   +G
Sbjct:   65 LGGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVS--DERSFENVRGWMRNIEQHASSNVNKILIGNKCDVKEDKRVISKARGQALADEFGIPFFETSAKSSVNVNDAFMTIAGDIKNRLTGSKG 192
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: A0A0E0LI58_ORYPU (Uncharacterized protein n=2 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LI58_ORYPU)

HSP 1 Score: 133 bits (335), Expect = 8.760e-37
Identity = 64/133 (48.12%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:   61 SQTEHLTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLE 459
            S+   + + G+RV+  IWDTAGQERFR IT AYY+ + GI+LVYD    DESSF +I+ W+ NI +HAS    ++L+GNK+D    + VST +G+  A+E+G+ FFETSAKT +NV + F+ +A++  +R+ E
Sbjct:   15 SEVRTVELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKILVGNKVDMDAKRVVSTAQGQKLADEYGMKFFETSAKTNQNVEQVFFTIARDIKQRLTE 145
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: A0A0E0LI60_ORYPU (Uncharacterized protein n=4 Tax=Oryza TaxID=4527 RepID=A0A0E0LI60_ORYPU)

HSP 1 Score: 133 bits (335), Expect = 1.170e-36
Identity = 64/133 (48.12%), Postives = 94/133 (70.68%), Query Frame = 1 
Query:   61 SQTEHLTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLE 459
            S+   + + G+RV+  IWDTAGQERFR IT AYY+ + GI+LVYD    DESSF +I+ W+ NI +HAS    ++L+GNK+D    + VST +G+  A+E+G+ FFETSAKT +NV + F+ +A++  +R+ E
Sbjct:   15 SEVRTVELDGKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKILVGNKVDMDAKRVVSTAQGQKLADEYGMKFFETSAKTNQNVEQVFFTIARDIKQRLTE 145
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BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Match: D8RW79_SELML (Rab family GTPase n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RW79_SELML)

HSP 1 Score: 134 bits (337), Expect = 1.480e-36
Identity = 66/129 (51.16%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:   76 LTIAGRRVRCDIWDTAGQERFRVITEAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNKIDKKGMKR-VSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRRVLE 459
            + + G+R++  IWDTAGQERFR IT AYY+ + GI+LVYD    DESSF +I+ W+ NI +HAS    ++L+GNK D    KR V TE+G+A A+EFG+ FFETSAKT +NV + F+ +A++  +R+ E
Sbjct:   57 IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTEKGQALADEFGIKFFETSAKTNQNVEDVFFTIARDIKQRLAE 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86641.20155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DRH8_CAFRO4.170e-4656.12Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A813AFS2_9DINO5.450e-3852.67RABE1D protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
C1E6E1_MICCC6.980e-3855.17Ras-related gtp-binding protein n=1 Tax=Micromonas... [more]
D8QMU7_SELML2.360e-3753.49Rab family GTPase n=2 Tax=Selaginella moellendorff... [more]
A0A7S0SFC4_9CHLO3.270e-3754.92Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
UPI0009017E4D7.200e-3753.49ras-related protein RABE1c-like n=2 Tax=Ipomoea Ta... [more]
Q019D2_OSTTA7.600e-3753.85Small GTPase superfamily, Rab type n=2 Tax=Ostreoc... [more]
A0A0E0LI58_ORYPU8.760e-3748.12Uncharacterized protein n=2 Tax=Oryza punctata Tax... [more]
A0A0E0LI60_ORYPU1.170e-3648.12Uncharacterized protein n=4 Tax=Oryza TaxID=4527 R... [more]
D8RW79_SELML1.480e-3651.16Rab family GTPase n=1 Tax=Selaginella moellendorff... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86641contigM-pyrifera_M_contig86641:340..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score138.7
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog296587.XP_002502151.1
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
GOsGO:0000160,GO:0000166,GO:0001882,GO:0001883,GO:0002790,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006904,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009306,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009987,GO:0010033,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017076,GO:0017157,GO:0019001,GO:0022406,GO:0023052,GO:0031090,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032879,GO:0032940,GO:0033036,GO:0035556,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0048278,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051716,GO:0060627,GO:0065007,GO:0070887,GO:0071310,GO:0071369,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:0140029,GO:0140056,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.Rab subfamily of small GTPases
EggNOG OGs34HCQ@3041,37N43@33090,KOG0078@1,KOG0078@2759
COG Functional cat.U
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.7224243-CDS-M-pyrifera_M_contig86641:339..8191622816775.7224243-CDS-M-pyrifera_M_contig86641:339..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86641 340..819 -
1692278171.3726165-CDS-M-pyrifera_M_contig86641:339..8191692278171.3726165-CDS-M-pyrifera_M_contig86641:339..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86641 340..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86641.20155.1prot_M-pyrifera_M_contig86641.20155.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86641 340..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86641.20155.1

>prot_M-pyrifera_M_contig86641.20155.1 ID=prot_M-pyrifera_M_contig86641.20155.1|Name=mRNA_M-pyrifera_M_contig86641.20155.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
FSSSSSSPSLFFTSSFSFSFSQTEHLTIAGRRVRCDIWDTAGQERFRVIT
EAYYKKSHGIVLVYDAAEPDESSFEHIQYWMENIRKHASPTAARVLIGNK
IDKKGMKRVSTERGRAAAEEFGVPFFETSAKTGENVTEAFYVVAKEALRR
VLEERGEDVA
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mRNA from alignment at M-pyrifera_M_contig86641:340..819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86641.20155.1 ID=mRNA_M-pyrifera_M_contig86641.20155.1|Name=mRNA_M-pyrifera_M_contig86641.20155.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig86641:340..819- (Macrocystis pyrifera P11B4 male)
TTCTCATCATCCTCATCATCCCCTTCACTCTTTTTTACCTCTTCCTTCTC
CTTCTCCTTTTCGCAGACGGAGCACTTGACGATTGCTGGTCGTCGGGTGC
GTTGTGACATTTGGGACACGGCTGGGCAGGAGCGGTTCCGCGTGATCACC
GAGGCGTATTATAAGAAGAGCCACGGGATTGTGCTGGTGTACGATGCGGC
GGAGCCTGACGAGAGCAGCTTCGAGCACATCCAGTACTGGATGGAGAACA
TTCGCAAGCACGCCTCTCCCACCGCCGCCCGTGTGCTCATCGGCAACAAG
ATCGACAAGAAGGGCATGAAGCGCGTCTCCACCGAGCGAGGCAGAGCGGC
TGCTGAAGAATTTGGAGTTCCGTTTTTCGAAACCTCGGCGAAAACAGGAG
AGAACGTCACCGAAGCCTTCTACGTCGTCGCGAAAGAGGCGCTCCGCAGA
GTCCTGGAGGAGAGGGGGGAAGATGTTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86641:340..819-

>mRNA_M-pyrifera_M_contig86641.20155.1 ID=mRNA_M-pyrifera_M_contig86641.20155.1|Name=mRNA_M-pyrifera_M_contig86641.20155.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig86641:340..819- (Macrocystis pyrifera P11B4 male)
TTCTCATCATCCTCATCATCCCCTTCACTCTTTTTTACCTCTTCCTTCTC
CTTCTCCTTTTCGCAGACGGAGCACTTGACGATTGCTGGTCGTCGGGTGC
GTTGTGACATTTGGGACACGGCTGGGCAGGAGCGGTTCCGCGTGATCACC
GAGGCGTATTATAAGAAGAGCCACGGGATTGTGCTGGTGTACGATGCGGC
GGAGCCTGACGAGAGCAGCTTCGAGCACATCCAGTACTGGATGGAGAACA
TTCGCAAGCACGCCTCTCCCACCGCCGCCCGTGTGCTCATCGGCAACAAG
ATCGACAAGAAGGGCATGAAGCGCGTCTCCACCGAGCGAGGCAGAGCGGC
TGCTGAAGAATTTGGAGTTCCGTTTTTCGAAACCTCGGCGAAAACAGGAG
AGAACGTCACCGAAGCCTTCTACGTCGTCGCGAAAGAGGCGCTCCGCAGA
GTCCTGGAGGAGAGGGGGGAAGATGTTGCCTTCTCATCATCCTCATCATC
CCCTTCACTCTTTTTTACCTCTTCCTTCTCCTTCTCCTTTTCGCAGACGG
AGCACTTGACGATTGCTGGTCGTCGGGTGCGTTGTGACATTTGGGACACG
GCTGGGCAGGAGCGGTTCCGCGTGATCACCGAGGCGTATTATAAGAAGAG
CCACGGGATTGTGCTGGTGTACGATGCGGCGGAGCCTGACGAGAGCAGCT
TCGAGCACATCCAGTACTGGATGGAGAACATTCGCAAGCACGCCTCTCCC
ACCGCCGCCCGTGTGCTCATCGGCAACAAGATCGACAAGAAGGGCATGAA
GCGCGTCTCCACCGAGCGAGGCAGAGCGGCTGCTGAAGAATTTGGAGTTC
CGTTTTTCGAAACCTCGGCGAAAACAGGAGAGAACGTCACCGAAGCCTTC
TACGTCGTCGCGAAAGAGGCGCTCCGCAGAGTCCTGGAGGAGAGGGGGGA
AGATGTTGCC
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