mRNA_M-pyrifera_M_contig86584.20145.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86584.20145.1
Unique NamemRNA_M-pyrifera_M_contig86584.20145.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: A0A835ZG21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG21_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.700e-27
Identity = 58/116 (50.00%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KF+D +W+ V+ ++LL++TR EAQ WL  F L+T PE RRRY + + RK  L R R+Y+N+VL+DQLPVL DVQR +DEL +A+VP  +    +    GL+ME VP++ E +VR
Sbjct:  278 WQKFIDFKWQDVKPADLLKLTRLEAQVWLALFHLVTQPECRRRYHINAFRKAALLRARRYVNDVLLDQLPVLADVQRFMDELAIADVPEPSQDPVSA---GLLMEQVPQVRETIVR 390
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: F0WSZ4_9STRA (Uncharacterized protein AlNc14C242G9484 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSZ4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.540e-26
Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:   31 VWEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAV 375
            +W+KFV  +W++VE SELL +T TEAQAW+  + LL    SR  Y +T +RK  L R+RKY+NE LVDQLP LVDVQR LDEL + +V   ++  G+G    L++E VP +++++
Sbjct:   38 IWKKFVHQKWKIVEPSELLVLTPTEAQAWIAVYYLLRTETSRIHYEMTQSRKDQLLRIRKYINEFLVDQLPFLVDVQRYLDELALMQV---SSTEGSGKHENLILEAVPRLSDSI 149
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: D7FH17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH17_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.090e-25
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KFVD EWR V  ++LL+VT+TE Q WL  + L+   E R+RY   S RK  + RVRKYLN++L+DQLPVL  VQR +DEL + EVP   + G  G    L+ME +P++ +++ R
Sbjct:  281 WQKFVDFEWRTVAAADLLQVTKTEGQVWLAMYHLMCEEECRKRYHFNSLRKNNILRVRKYLNDILLDQLPVLASVQRYMDELTIMEVPEPPSMGTTG---SLLMEQIPKVRQSLTR 393
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: W2KZ45_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KZ45_PHYPR)

HSP 1 Score: 107 bits (266), Expect = 1.950e-24
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KFVD +W +VE S+LL +T TEAQ WL  + LL    +R  Y +T  RK  L RVRKYLNE+LVDQLP+L DVQR LDEL + +V  A+  G  G    L+ME VP + ++++R
Sbjct:  266 WKKFVDQKWVIVEPSDLLALTTTEAQVWLAIYYLLCTKSAREHYEVTQYRKDQLLRVRKYLNELLVDQLPLLADVQRYLDELAIVQVGSASVLGKNG----LVMEAVPYLRDSILR 377
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: A0A329T1X1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1X1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.950e-24
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KFVD +W VVE S+LL +T TEAQ WL  + LL    +R  Y +T  RK  L R+RKYLNE+LVDQLP+L DVQR LDEL + +V  ++  G  G    L+ME VP + +++VR
Sbjct:  267 WKKFVDQKWVVVEPSDLLALTTTEAQVWLAIYYLLCTKSAREHYEVTQYRKDQLLRIRKYLNELLVDQLPLLADVQRYLDELAIVQVGSSSVLGKNG----LVMEAVPYLRDSIVR 378
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: A0A0W8DJP2_PHYNI (Histone-lysine N-methyltransferase CG1716 n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJP2_PHYNI)

HSP 1 Score: 107 bits (266), Expect = 2.160e-24
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KFVD +W +VE S+LL +T TEAQ WL  + LL    +R  Y +T  RK  L RVRKYLNE+LVDQLP+L DVQR LDEL + +V  A+  G  G    L+ME VP + ++++R
Sbjct:  656 WKKFVDQKWVIVEPSDLLALTTTEAQVWLAIYYLLCTKSAREHYEVTQYRKDQLLRVRKYLNELLVDQLPLLADVQRYLDELAIVQVGSASVLGKNG----LVMEAVPYLRDSILR 767
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: A0A7S1CRR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRR6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.410e-24
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVRE 384
            W+KF + +W  V   +LLR+T+TE Q WL  + L+   + R +Y   S+RKG + R+RKY+NE+L+DQLP L +VQR LDEL + E P  TA GGA  A GL++E VP + + ++R+
Sbjct:  271 WQKFDEQKWSDVAPVDLLRLTKTEGQVWLILYNLMCDKDCRAKYYFHSSRKGAIMRLRKYMNELLLDQLPPLAEVQRYLDELAIMETPAPTAVGGAMSAAGLVLEAVPVLRDTLLRD 387
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: A0A6A3ZH85_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZH85_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.720e-24
Identity = 59/116 (50.86%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KFVD +W VVE S+LL +T TEAQ WL  + LL    +R  Y +T  RK  L R+RKYLNE+LVDQLP+L DVQR LDEL + +V   +  G  G    L+ME VP + + +VR
Sbjct:  267 WKKFVDQKWIVVEPSDLLALTTTEAQVWLAIYYLLCTKSAREHYEVTQYRKDQLLRIRKYLNELLVDQLPLLADVQRYLDELSIVQVGSTSVLGKNG----LVMEAVPYLRDRIVR 378
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: A0A3R7H0Y9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H0Y9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.110e-23
Identity = 61/126 (48.41%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:    4 GEEEEXXEEVWEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            GE+E   E  W+KFVD +W  VE  +LL +T TEAQ WL  + LL    +R  Y +T  RK  L R+RKYLNE+LVDQLP+L DVQR LDEL + +V   +  G  G    L+ME VP + + +VR
Sbjct:  236 GEQETKTEVKWKKFVDQKWVFVEPGDLLALTTTEAQVWLAIYYLLCTKSAREHYEVTQYRKAQLLRIRKYLNELLVDQLPLLADVQRYLDELSIVQVGSTSVLGKNG----LVMEAVPYLRDNIVR 357
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BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Match: G4YIR3_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIR3_PHYSP)

HSP 1 Score: 104 bits (259), Expect = 1.750e-23
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:   34 WEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPESRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPVATAAGGAGPAVGLMMEVVPEITEAVVR 381
            W+KFVD +W  VE S+LL +T TEAQ WL  + LL    +R  Y +T  RK  L R+RKYLNE+LVDQLP+L DVQR LDEL + +V   +  G  G    L+ME VP + + +VR
Sbjct:  267 WKKFVDQKWITVEPSDLLALTTTEAQVWLAIYYLLCTKSAREHYEVTQYRKDQLLRIRKYLNELLVDQLPLLADVQRYLDELAIVQVGSTSVLGKNG----LVMEAVPYLRDRIVR 378
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86584.20145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG21_9STRA4.700e-2750.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0WSZ4_9STRA2.540e-2648.70Uncharacterized protein AlNc14C242G9484 n=1 Tax=Al... [more]
D7FH17_ECTSI1.090e-2548.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W2KZ45_PHYPR1.950e-2450.86Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A329T1X1_9STRA1.950e-2450.86Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8DJP2_PHYNI2.160e-2450.86Histone-lysine N-methyltransferase CG1716 n=2 Tax=... [more]
A0A7S1CRR6_9STRA2.410e-2446.15Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6A3ZH85_9STRA3.720e-2450.86Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3R7H0Y9_9STRA1.110e-2348.41Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
G4YIR3_PHYSP1.750e-2350.00Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86584contigM-pyrifera_M_contig86584:34..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue8.8e-23
Seed eggNOG ortholog2880.D7FH17
Preferred nameZMYND10
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003008,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0007605,GO:0008150,GO:0008270,GO:0009987,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0019230,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0031344,GO:0031346,GO:0032501,GO:0033043,GO:0034451,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044459,GO:0044464,GO:0044782,GO:0045177,GO:0045724,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048870,GO:0050789,GO:0050794,GO:0050877,GO:0050884,GO:0050905,GO:0050954,GO:0051128,GO:0051130,GO:0051179,GO:0051674,GO:0060271,GO:0060491,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071944,GO:0097458,GO:0097722,GO:0098590,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:1902017,GO:1902115,GO:1902117,GO:1905503,GO:1905505
EggNOG free text desc.positive regulation of motile cilium assembly
EggNOG OGs28JQ5@1,2QS3F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.1284153-CDS-M-pyrifera_M_contig86584:33..4171622816775.1284153-CDS-M-pyrifera_M_contig86584:33..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86584 34..417 +
1692278171.0597103-CDS-M-pyrifera_M_contig86584:33..4171692278171.0597103-CDS-M-pyrifera_M_contig86584:33..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86584 34..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86584.20145.1prot_M-pyrifera_M_contig86584.20145.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86584 34..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86584.20145.1

>prot_M-pyrifera_M_contig86584.20145.1 ID=prot_M-pyrifera_M_contig86584.20145.1|Name=mRNA_M-pyrifera_M_contig86584.20145.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
EGEEEEEEEEVWEKFVDGEWRVVETSELLRVTRTEAQAWLGFFALLTAPE
SRRRYALTSARKGTLGRVRKYLNEVLVDQLPVLVDVQRILDELQVAEVPV
ATAAGGAGPAVGLMMEVVPEITEAVVRE
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mRNA from alignment at M-pyrifera_M_contig86584:34..417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86584.20145.1 ID=mRNA_M-pyrifera_M_contig86584.20145.1|Name=mRNA_M-pyrifera_M_contig86584.20145.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig86584:34..417+ (Macrocystis pyrifera P11B4 male)
GAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGTGTGGGAGAAGTTTGTGGA
TGGGGAGTGGAGGGTGGTGGAGACGAGTGAGCTTCTTCGAGTGACACGGA
CTGAAGCGCAAGCTTGGCTGGGTTTCTTTGCGCTTCTGACGGCTCCAGAG
AGTCGTAGGAGGTATGCTCTGACTTCGGCTCGCAAAGGGACGTTGGGACG
AGTCAGGAAGTACCTCAACGAAGTCCTGGTGGATCAGTTGCCCGTGTTGG
TGGATGTGCAGAGGATCTTGGACGAATTGCAAGTCGCAGAAGTACCTGTC
GCCACTGCTGCCGGGGGAGCAGGCCCTGCTGTGGGCCTTATGATGGAGGT
GGTGCCGGAAATCACAGAGGCTGTGGTCAGAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86584:34..417+

>mRNA_M-pyrifera_M_contig86584.20145.1 ID=mRNA_M-pyrifera_M_contig86584.20145.1|Name=mRNA_M-pyrifera_M_contig86584.20145.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig86584:34..417+ (Macrocystis pyrifera P11B4 male)
GAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGTGTGGGAGAAGTTTGTGGA
TGGGGAGTGGAGGGTGGTGGAGACGAGTGAGCTTCTTCGAGTGACACGGA
CTGAAGCGCAAGCTTGGCTGGGTTTCTTTGCGCTTCTGACGGCTCCAGAG
AGTCGTAGGAGGTATGCTCTGACTTCGGCTCGCAAAGGGACGTTGGGACG
AGTCAGGAAGTACCTCAACGAAGTCCTGGTGGATCAGTTGCCCGTGTTGG
TGGATGTGCAGAGGATCTTGGACGAATTGCAAGTCGCAGAAGTACCTGTC
GCCACTGCTGCCGGGGGAGCAGGCCCTGCTGTGGGCCTTATGATGGAGGT
GGTGCCGGAAATCACAGAGGCTGTGGTCAGAGAAGAAGGAGAGGAGGAGG
AGGAGGAGGAGGAGGTGTGGGAGAAGTTTGTGGATGGGGAGTGGAGGGTG
GTGGAGACGAGTGAGCTTCTTCGAGTGACACGGACTGAAGCGCAAGCTTG
GCTGGGTTTCTTTGCGCTTCTGACGGCTCCAGAGAGTCGTAGGAGGTATG
CTCTGACTTCGGCTCGCAAAGGGACGTTGGGACGAGTCAGGAAGTACCTC
AACGAAGTCCTGGTGGATCAGTTGCCCGTGTTGGTGGATGTGCAGAGGAT
CTTGGACGAATTGCAAGTCGCAGAAGTACCTGTCGCCACTGCTGCCGGGG
GAGCAGGCCCTGCTGTGGGCCTTATGATGGAGGTGGTGCCGGAAATCACA
GAGGCTGTGGTCAGAGAA
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