mRNA_M-pyrifera_M_contig86531.20140.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86531.20140.1
Unique NamemRNA_M-pyrifera_M_contig86531.20140.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86531.20140.1 vs. uniprot
Match: A0A518C208_9BACT (Secreted effector protein pipB2 n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518C208_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 6.610e-18
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 1 
Query:   46 MIQIKHRITGEVLYEIEADALAGAKLVGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFHNCNLSGARLVEADISMCDLRCDLRKANLTRA 474
            MIQIKHRITGEVLYEI+ADALAGAKLV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFHNCNLSGARLVEADISMCDLRCD+  ANLTRA
Sbjct:    1 MIQIKHRITGEVLYEIDADALAGAKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHXCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFHNCNLSGARLVEADISMCDLRCDMPGANLTRA 143
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BLAST of mRNA_M-pyrifera_M_contig86531.20140.1 vs. uniprot
Match: A0A7V8V1N7_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V1N7_9BACT)

HSP 1 Score: 85.9 bits (211), Expect = 9.280e-18
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:   46 MIQIKHRITGEVLYEIEADALAGAKLVGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFHNCNLSGARLVEADISMCDLRCDLRKANLT 468
            MIQIKHRITGEVLYEIEADALAGAKLVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   HNCNLSGARLVEADISMCDLRCDLRKANLT
Sbjct:    1 MIQIKHRITGEVLYEIEADALAGAKLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNCNLSGARLVEADISMCDLRCDLRKANLT 141
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BLAST of mRNA_M-pyrifera_M_contig86531.20140.1 vs. uniprot
Match: A0A2S8F4H4_9BACT (Uncharacterized protein n=4 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8F4H4_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-8
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 MPHPQSL-ASYPGSDAMIQIKHRITGEVLYEIEADALAGAKLVGK 132
            M HP S    Y GSDAMIQIKHR T EVLYEI+AD LAGAKLVGK
Sbjct:    1 MKHPHSWPVFYLGSDAMIQIKHRSTKEVLYEIDADTLAGAKLVGK 45
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BLAST of mRNA_M-pyrifera_M_contig86531.20140.1 vs. uniprot
Match: A0A368KVF4_9BACT (Pentapeptide repeat-containing protein n=2 Tax=Blastopirellula cremea TaxID=1031537 RepID=A0A368KVF4_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.670e-7
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   10 PQSLAS-YPGSDAMIQIKHRITGEVLYEIEADALAGAKLVGK 132
            P  LAS +PGSDAMIQIKHR TGE+L EI AD+L G KLVGK
Sbjct:   29 PPFLASIFPGSDAMIQIKHRNTGEILLEIAADSLVGMKLVGK 70
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BLAST of mRNA_M-pyrifera_M_contig86531.20140.1 vs. uniprot
Match: A0A2S8GH74_9BACT (Low-complexity protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GH74_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 3.460e-7
Identity = 86/138 (62.32%), Postives = 95/138 (68.84%), Query Frame = 1 
Query:   46 MIQIKHRITGEVLYEIEADALAGAKLVGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKFHNCNLSGARLVEADISMCDLRCDLRKA 459
            MIQIKHR +G++L+E++AD L G KL+GK                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             K  NCNLS ARLVEAD+SMCDLRC+L  A
Sbjct:    1 MIQIKHRESGDILFEMDADCLQGQKLIGKNLKGADLSNRVLRNCVFDSDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSNMTNAVLRYGKLENCNLSSARLVEADLSMCDLRCNLASA 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86531.20140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A518C208_9BACT6.610e-1893.71Secreted effector protein pipB2 n=2 Tax=Pirellulac... [more]
A0A7V8V1N7_9BACT9.280e-1897.16Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
A0A2S8F4H4_9BACT1.150e-875.56Uncharacterized protein n=4 Tax=Blastopirellula ma... [more]
A0A368KVF4_9BACT2.670e-773.81Pentapeptide repeat-containing protein n=2 Tax=Bla... [more]
A0A2S8GH74_9BACT3.460e-762.32Low-complexity protein n=1 Tax=Blastopirellula mar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86531contigM-pyrifera_M_contig86531:3..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.879583-CDS-M-pyrifera_M_contig86531:2..4821622816774.879583-CDS-M-pyrifera_M_contig86531:2..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86531 3..482 -
1692278170.9124813-CDS-M-pyrifera_M_contig86531:2..4821692278170.9124813-CDS-M-pyrifera_M_contig86531:2..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86531 3..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86531.20140.1prot_M-pyrifera_M_contig86531.20140.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86531 3..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86531.20140.1

>prot_M-pyrifera_M_contig86531.20140.1 ID=prot_M-pyrifera_M_contig86531.20140.1|Name=mRNA_M-pyrifera_M_contig86531.20140.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MPHPQSLASYPGSDAMIQIKHRITGEVLYEIEADALAGAKLVGKNLAGAD
LSSLILRNCVFDSDNLDEVSFENSDLEGASFMGASVKHACFDGANMVGVT
MTDSILNESSLKDTNLTKANLRYAKFHNCNLSGARLVEADISMCDLRCDL
RKANLTRADL
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mRNA from alignment at M-pyrifera_M_contig86531:3..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86531.20140.1 ID=mRNA_M-pyrifera_M_contig86531.20140.1|Name=mRNA_M-pyrifera_M_contig86531.20140.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig86531:3..482- (Macrocystis pyrifera P11B4 male)
ATGCCACACCCCCAATCTTTGGCCAGTTATCCTGGGAGTGACGCCATGAT
TCAAATTAAGCATCGCATTACAGGCGAAGTCCTGTACGAGATTGAAGCAG
ACGCGTTGGCAGGTGCCAAACTCGTCGGCAAAAACCTAGCCGGGGCCGAC
CTTTCCTCGCTGATACTTCGTAATTGTGTTTTTGATAGTGACAATTTAGA
CGAAGTCTCTTTCGAGAATTCTGATCTTGAAGGAGCCAGTTTTATGGGTG
CCAGCGTGAAGCATGCCTGCTTCGATGGTGCCAATATGGTTGGCGTCACC
ATGACCGACTCGATACTCAACGAGTCTTCGCTCAAAGATACCAACCTTAC
CAAGGCTAACCTGCGTTACGCCAAGTTTCACAACTGCAATCTTTCCGGTG
CTCGATTGGTTGAAGCCGACATCAGCATGTGTGATCTGCGTTGTGATTTG
CGCAAGGCGAATCTTACTCGAGCGGATTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86531:3..482-

>mRNA_M-pyrifera_M_contig86531.20140.1 ID=mRNA_M-pyrifera_M_contig86531.20140.1|Name=mRNA_M-pyrifera_M_contig86531.20140.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig86531:3..482- (Macrocystis pyrifera P11B4 male)
ATGCCACACCCCCAATCTTTGGCCAGTTATCCTGGGAGTGACGCCATGAT
TCAAATTAAGCATCGCATTACAGGCGAAGTCCTGTACGAGATTGAAGCAG
ACGCGTTGGCAGGTGCCAAACTCGTCGGCAAAAACCTAGCCGGGGCCGAC
CTTTCCTCGCTGATACTTCGTAATTGTGTTTTTGATAGTGACAATTTAGA
CGAAGTCTCTTTCGAGAATTCTGATCTTGAAGGAGCCAGTTTTATGGGTG
CCAGCGTGAAGCATGCCTGCTTCGATGGTGCCAATATGGTTGGCGTCACC
ATGACCGACTCGATACTCAACGAGTCTTCGCTCAAAGATACCAACCTTAC
CAAGGCTAACCTGCGTTACGCCAAGTTTCACAACTGCAATCTTTCCGGTG
CTCGATTGGTTGAAGCCGACATCAGCATGTGTGATCTGCGTTGTGATTTG
CGCAAGGCGAATCTTACTCGAGCGGATTTGATGCCACACCCCCAATCTTT
GGCCAGTTATCCTGGGAGTGACGCCATGATTCAAATTAAGCATCGCATTA
CAGGCGAAGTCCTGTACGAGATTGAAGCAGACGCGTTGGCAGGTGCCAAA
CTCGTCGGCAAAAACCTAGCCGGGGCCGACCTTTCCTCGCTGATACTTCG
TAATTGTGTTTTTGATAGTGACAATTTAGACGAAGTCTCTTTCGAGAATT
CTGATCTTGAAGGAGCCAGTTTTATGGGTGCCAGCGTGAAGCATGCCTGC
TTCGATGGTGCCAATATGGTTGGCGTCACCATGACCGACTCGATACTCAA
CGAGTCTTCGCTCAAAGATACCAACCTTACCAAGGCTAACCTGCGTTACG
CCAAGTTTCACAACTGCAATCTTTCCGGTGCTCGATTGGTTGAAGCCGAC
ATCAGCATGTGTGATCTGCGTTGTGATTTGCGCAAGGCGAATCTTACTCG
AGCGGATTTG
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