mRNA_M-pyrifera_M_contig86527.20137.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86527.20137.1
Unique NamemRNA_M-pyrifera_M_contig86527.20137.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86527.20137.1 vs. uniprot
Match: A0A7V8V7P3_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V7P3_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.340e-9
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:  610 IVTRTGVTGEGAATLATQLPETEIQHVYKPEN 705
            IVTRTGVTGEGAATLATQLPETEIQHVYKPEN
Sbjct:  326 IVTRTGVTGEGAATLATQLPETEIQHVYKPEN 357
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BLAST of mRNA_M-pyrifera_M_contig86527.20137.1 vs. uniprot
Match: A0A518C479_9BACT (Leucine Rich repeats (2 copies) n=1 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C479_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.790e-5
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  610 IVTRTGVTGEGAATLATQLPETEIQHVYKPEN 705
            IVTRTGVT EGAA LA +LPETEIQHVY  EN
Sbjct:  326 IVTRTGVTSEGAAALANKLPETEIQHVYMTEN 357
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86527.20137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V8V7P3_9BACT1.340e-9100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
A0A518C479_9BACT3.790e-581.25Leucine Rich repeats (2 copies) n=1 Tax=Bremerella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86527contigM-pyrifera_M_contig86527:3..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size708
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.7708743-CDS-M-pyrifera_M_contig86527:2..7101622816774.7708743-CDS-M-pyrifera_M_contig86527:2..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86527 3..710 +
1692278170.8620768-CDS-M-pyrifera_M_contig86527:2..7101692278170.8620768-CDS-M-pyrifera_M_contig86527:2..710Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86527 3..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86527.20137.1prot_M-pyrifera_M_contig86527.20137.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86527 3..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86527.20137.1

>prot_M-pyrifera_M_contig86527.20137.1 ID=prot_M-pyrifera_M_contig86527.20137.1|Name=mRNA_M-pyrifera_M_contig86527.20137.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=236bp
QICQCGKLKNLQFRGNPITDADLKHVGRLTQLKVLGLDETAVEGATFDRL
VGLKQLEELYLFGTPFQEANLAKLAPFTKLKRIRLRGTKIDGSGFESLAE
LNALEDLDVSETNFSDAAVEHLLNHNGLKKLNLWATKITDQSLPNVAQLT
SLEWLNLDRNSIGDAQIEELTKLPSVTWLHLGSTSLTNDGLQKLAPMTQL
KTLIVTRTGVTGEGAATLATQLPETEIQHVYKPEN*
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mRNA from alignment at M-pyrifera_M_contig86527:3..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86527.20137.1 ID=mRNA_M-pyrifera_M_contig86527.20137.1|Name=mRNA_M-pyrifera_M_contig86527.20137.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig86527:3..710+ (Macrocystis pyrifera P11B4 male)
CAAATTTGCCAATGCGGCAAACTAAAAAACCTGCAGTTCCGGGGAAATCC
GATCACCGATGCCGACCTGAAGCATGTGGGTCGGCTCACACAATTGAAGG
TCCTTGGGCTCGATGAAACGGCCGTCGAAGGAGCCACCTTCGACAGACTG
GTCGGACTGAAACAGTTGGAAGAACTGTACCTGTTCGGCACGCCCTTTCA
GGAAGCAAACCTGGCGAAACTGGCCCCGTTCACCAAGCTAAAACGTATTC
GCTTGCGAGGCACGAAGATTGACGGATCCGGCTTCGAGTCACTCGCCGAG
CTCAACGCGCTAGAAGATCTCGATGTGAGTGAAACCAATTTCAGCGATGC
TGCCGTCGAACATTTGCTGAACCACAATGGTCTGAAGAAACTCAATCTGT
GGGCCACCAAAATCACTGATCAGTCGCTACCCAACGTGGCCCAACTGACC
TCGCTCGAATGGCTGAACCTCGACCGCAACTCGATCGGAGATGCTCAGAT
TGAAGAGCTGACCAAGCTTCCCAGCGTCACCTGGCTACACCTCGGATCGA
CCTCATTGACCAACGACGGACTGCAAAAACTTGCGCCGATGACGCAGCTC
AAAACGCTGATAGTCACCCGTACCGGCGTTACCGGCGAAGGAGCAGCGAC
CCTTGCCACGCAGCTTCCGGAAACAGAAATTCAGCATGTGTACAAGCCGG
AAAATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86527:3..710+

>mRNA_M-pyrifera_M_contig86527.20137.1 ID=mRNA_M-pyrifera_M_contig86527.20137.1|Name=mRNA_M-pyrifera_M_contig86527.20137.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1416bp|location=Sequence derived from alignment at M-pyrifera_M_contig86527:3..710+ (Macrocystis pyrifera P11B4 male)
CAAATTTGCCAATGCGGCAAACTAAAAAACCTGCAGTTCCGGGGAAATCC
GATCACCGATGCCGACCTGAAGCATGTGGGTCGGCTCACACAATTGAAGG
TCCTTGGGCTCGATGAAACGGCCGTCGAAGGAGCCACCTTCGACAGACTG
GTCGGACTGAAACAGTTGGAAGAACTGTACCTGTTCGGCACGCCCTTTCA
GGAAGCAAACCTGGCGAAACTGGCCCCGTTCACCAAGCTAAAACGTATTC
GCTTGCGAGGCACGAAGATTGACGGATCCGGCTTCGAGTCACTCGCCGAG
CTCAACGCGCTAGAAGATCTCGATGTGAGTGAAACCAATTTCAGCGATGC
TGCCGTCGAACATTTGCTGAACCACAATGGTCTGAAGAAACTCAATCTGT
GGGCCACCAAAATCACTGATCAGTCGCTACCCAACGTGGCCCAACTGACC
TCGCTCGAATGGCTGAACCTCGACCGCAACTCGATCGGAGATGCTCAGAT
TGAAGAGCTGACCAAGCTTCCCAGCGTCACCTGGCTACACCTCGGATCGA
CCTCATTGACCAACGACGGACTGCAAAAACTTGCGCCGATGACGCAGCTC
AAAACGCTGATAGTCACCCGTACCGGCGTTACCGGCGAAGGAGCAGCGAC
CCTTGCCACGCAGCTTCCGGAAACAGAAATTCAGCATGTGTACAAGCCGG
AAAATTAGCAAATTTGCCAATGCGGCAAACTAAAAAACCTGCAGTTCCGG
GGAAATCCGATCACCGATGCCGACCTGAAGCATGTGGGTCGGCTCACACA
ATTGAAGGTCCTTGGGCTCGATGAAACGGCCGTCGAAGGAGCCACCTTCG
ACAGACTGGTCGGACTGAAACAGTTGGAAGAACTGTACCTGTTCGGCACG
CCCTTTCAGGAAGCAAACCTGGCGAAACTGGCCCCGTTCACCAAGCTAAA
ACGTATTCGCTTGCGAGGCACGAAGATTGACGGATCCGGCTTCGAGTCAC
TCGCCGAGCTCAACGCGCTAGAAGATCTCGATGTGAGTGAAACCAATTTC
AGCGATGCTGCCGTCGAACATTTGCTGAACCACAATGGTCTGAAGAAACT
CAATCTGTGGGCCACCAAAATCACTGATCAGTCGCTACCCAACGTGGCCC
AACTGACCTCGCTCGAATGGCTGAACCTCGACCGCAACTCGATCGGAGAT
GCTCAGATTGAAGAGCTGACCAAGCTTCCCAGCGTCACCTGGCTACACCT
CGGATCGACCTCATTGACCAACGACGGACTGCAAAAACTTGCGCCGATGA
CGCAGCTCAAAACGCTGATAGTCACCCGTACCGGCGTTACCGGCGAAGGA
GCAGCGACCCTTGCCACGCAGCTTCCGGAAACAGAAATTCAGCATGTGTA
CAAGCCGGAAAATTAG
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