mRNA_M-pyrifera_M_contig86422.20121.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86422.20121.1
Unique NamemRNA_M-pyrifera_M_contig86422.20121.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A3C2B337_9ACTN (Serine hydrolase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B337_9ACTN)

HSP 1 Score: 265 bits (676), Expect = 1.290e-83
Identity = 133/208 (63.94%), Postives = 161/208 (77.40%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASG-GRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPILP 621
            +KR+MQ  EW ++GT    YGLGF +  IGGRRVLGHGGGYPGHITRTYFDP DRLAVS LTNAIDGPAL MA A +KL+DLA  ++ DPAA+  G +DL  F GRFAT+WGVYD+ +LGGRL+Q++P+  DPT +PT LDV+D  TLRI  T GYGS GE +T++R+ DGSVRSVRGGSG+ A P   FR A+AAR +V LG P+ P
Sbjct:  267 AKRQMQHGEWKIDGTE-AEYGLGFEIVTIGGRRVLGHGGGYPGHITRTYFDPTDRLAVSVLTNAIDGPALAMATAAIKLIDLARGSEPDPAATNDGAIDLQSFCGRFATVWGVYDIALLGGRLYQLSPSLVDPTVAPTRLDVIDGDTLRIADTAGYGSRGELMTFDRHPDGSVRSVRGGSGSLAHPFDEFRAAIAARTQVTLGAPVRP 473          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A7W1R5Y6_9ACTN (Serine hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1R5Y6_9ACTN)

HSP 1 Score: 212 bits (540), Expect = 1.060e-65
Identity = 115/208 (55.29%), Postives = 136/208 (65.38%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDD-RTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPILP 621
            SKR MQRTEW V G+ G+ Y LGF V +I  RR+LGHGGG+PGHIT T FDP DR+A S LTNAIDGPA    A   +L+DLA  A A    +      S F GRFA LWGV DVV LGGRLH + PT  DPTA P  LDV D+  TLRI  + GY + GE L Y R+DDG+VR VRG  G + +P  PF  ALA  +R  +G P++P
Sbjct:   57 SKRVMQRTEWQVAGSAGSEYALGFGVTKINDRRLLGHGGGFPGHITHTLFDPHDRIAASVLTNAIDGPAQMYVATVFRLIDLALGAAASETPAVAPDVASRFTGRFANLWGVSDVVDLGGRLHLLDPTVGDPTADPIRLDVADELTTLRITDSPGYAAPGEELVYTRDDDGAVREVRGAGGVTMYPHDPFVAALARTDRARVGDPVVP 264          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A7W0T7V6_9ACTN (Beta-lactamase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0T7V6_9ACTN)

HSP 1 Score: 212 bits (540), Expect = 3.900e-63
Identity = 115/208 (55.29%), Postives = 136/208 (65.38%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDD-RTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPILP 621
            SKR MQRTEW V G+ G+ Y LGF V +I  RR+LGHGGG+PGHIT T FDP DR+A S LTNAIDGPA    A   +L+DLA  A A    +      S F GRFA LWGV DVV LGGRLH + PT  DPTA P  LDV D+  TLRI  + GY + GE L Y R+DDG+VR VRG  G + +P  PF  ALA  +R  +G P++P
Sbjct:  276 SKRVMQRTEWQVAGSAGSEYALGFGVTKINDRRLLGHGGGFPGHITHTLFDPHDRIAASVLTNAIDGPAQMYVATVFRLIDLALGAAASETPAVAPDVASRFTGRFANLWGVSDVVDLGGRLHLLDPTVGDPTADPIRLDVADELTTLRITDSPGYAAPGEELVYTRDDDGAVREVRGAGGVTMYPHDPFVAALARTDRARVGDPVVP 483          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A7K3M5M4_9ACTN (Serine hydrolase n=2 Tax=Phytoactinopolyspora mesophila TaxID=2650750 RepID=A0A7K3M5M4_9ACTN)

HSP 1 Score: 205 bits (522), Expect = 1.250e-60
Identity = 116/205 (56.59%), Postives = 137/205 (66.83%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPI 615
            SKR MQR EW VEGT G  YGLG +  EIGGR V GHGGGYPGHITRT+FDP DRLAVS LTNAIDGPA E+A   ++LV+LA     D  A      L  F GRFA LW   DVV+LGG+L+ +APT ADPT +P  L V+DD TLR+    GY S GETL+YE + D +V S+RG +GTS +P+   R A A    V  G P+
Sbjct:  267 SKRLMQRAEWKVEGTDGE-YGLGLSRAEIGGRLVFGHGGGYPGHITRTFFDPEDRLAVSVLTNAIDGPAEELAVTLLRLVNLAESGAHDTDAGSDHAGLHRFTGRFANLWRAADVVLLGGQLYLLAPTAADPTHAPAKLSVIDDHTLRMTGGVGYASYGETLSYEFSGD-TVMSIRGATGTS-YPIERVRGAAATLGHVSPGKPL 468          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: UPI0014086C68 (serine hydrolase n=1 Tax=Phytoactinopolyspora limicola TaxID=2715536 RepID=UPI0014086C68)

HSP 1 Score: 203 bits (516), Expect = 1.090e-59
Identity = 119/211 (56.40%), Postives = 139/211 (65.88%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGR------VDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPI 615
            SKR M+R EW VEG G + YG G A  E GGRRV GHGGGYPGHITRTYFDP DRLAVS LTNAIDGPA  +A A ++LV+LA   +  P A GG       VDL  F GR+A LW V DV +LGGRL+ + PT  DPT   T L VVDDRTL+I    GYGS GE LT+E  D  +V SVRGGS T+++P+     A A R  V +  P+
Sbjct:  267 SKRLMRRAEWTVEG-GQSEYGFGLARFEFGGRRVYGHGGGYPGHITRTYFDPADRLAVSVLTNAIDGPADTLANALIRLVNLA--VEGAPLADGGSPPPANGVDLRRFTGRYANLWRVSDVALLGGRLYLMVPTSDDPTQGLTPLTVVDDRTLKISGGVGYGSYGEALTFEF-DGAAVVSVRGGSATTSYPIDELTAAAAKRATVSVEAPL 473          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A6L9S1V4_9ACTN (Beta-lactamase family protein n=2 Tax=Phytoactinopolyspora halotolerans TaxID=1981512 RepID=A0A6L9S1V4_9ACTN)

HSP 1 Score: 202 bits (515), Expect = 1.440e-59
Identity = 117/212 (55.19%), Postives = 142/212 (66.98%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGR-------VDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPI 615
            SKR MQR EW V+G+ G  YGLG    EIGGRRV GHGGGYPGHIT+TYFDP  +LAVS LTNAIDGPA  +A+  +++V+LA ++      SGG        VDL  F GRFAT+WGV DVV LG RL+   P   DPT   T LDVVDD TLR+V   G+GS GET+ YE +    V SVRGGS T+A+P+     A+A +ERV +G P+
Sbjct:  267 SKRLMQRAEWQVDGSDGE-YGLGLDRAEIGGRRVFGHGGGYPGHITKTYFDPEAKLAVSVLTNAIDGPAEPLASGLIRMVNLAVES------SGGNGDERRSDVDLDRFTGRFATMWGVQDVVRLGRRLYLFRPVADDPTQPTTKLDVVDDSTLRVVGGIGFGSYGETVRYEFSG-AEVVSVRGGSATTAYPIERITAAVATQERVSVGDPL 470          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A4R4RUG3_9ACTN (Class A beta-lactamase-related serine hydrolase n=3 Tax=Jiangella TaxID=281472 RepID=A0A4R4RUG3_9ACTN)

HSP 1 Score: 200 bits (509), Expect = 1.330e-58
Identity = 116/206 (56.31%), Postives = 134/206 (65.05%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPIL 618
            SKR MQR EW VEG GG  YGLGF    IG R V GHGGGYPGH+TRT FDPV RLAVS LTNAIDGPA+ +A   ++LV+LA  A   P      VDLS F GRFAT+W V+DVV L GRL+ + PTE DPT+ P  L VVDD TLRI   TGY   GE + YE   DG V SV+  + T A P+     A+   +RV  GTP+L
Sbjct:  268 SKRLMQRAEWKVEGRGGAEYGLGFGRSMIGDRLVFGHGGGYPGHLTRTSFDPVGRLAVSVLTNAIDGPAVMLAEGLIRLVNLAESAS--PLLEPSPVDLSRFTGRFATMWRVFDVVDLAGRLYLLDPTERDPTSEPVTLAVVDDHTLRISGGTGYAPVGEPIRYEFAVDG-VASVQAFAMT-AHPIDRVARAVRTHDRVSPGTPLL 469          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: UPI0004B00250 (serine hydrolase n=1 Tax=Jiangella gansuensis TaxID=281473 RepID=UPI0004B00250)

HSP 1 Score: 199 bits (506), Expect = 2.840e-58
Identity = 115/206 (55.83%), Postives = 140/206 (67.96%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPIL 618
            SKR MQR EW +EG   + YGLGF    +G R V GHGGGYPGHITRT+FDPVD++AVS LTNAIDGPAL +A A  +LV+LA +A+      G  VDLS F GRFA LW V+DVV L G+L+ + PT+ DPTA P  L+VVD+RTLR+   +GYG  GET+ Y R DD  V SV   + T A P A   EA   R+RV  GTP++
Sbjct:  267 SKRLMQRAEWKIEGAN-SEYGLGFGRAVVGERLVHGHGGGYPGHITRTWFDPVDQIAVSVLTNAIDGPALMLAEALFRLVNLAQRAERQ---DGTGVDLSRFTGRFANLWRVFDVVDLAGQLYLLDPTDQDPTAQPVTLEVVDERTLRLRDGSGYGPVGETMQY-RYDDTGVSSVAAFAMT-AHPAARVTEAAKRRDRVSPGTPLV 466          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: UPI000D686613 (serine hydrolase n=1 Tax=Nocardioides speluncae TaxID=2670337 RepID=UPI000D686613)

HSP 1 Score: 199 bits (506), Expect = 3.710e-58
Identity = 111/208 (53.37%), Postives = 136/208 (65.38%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLA-NKADADPAASGGRVDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPILP 621
            SKRRMQR++W       + YGLGF V  +G RRV+GHGGGYPGHIT T  DPVDRLAVS LTNAIDG A        +L+ LA + AD++P   G  VDL  F GRFA+LW V DV   G RL+ + PT  DPT  PT L VVDDRTLR++   G+GS GE + Y   DDG + SVRG SG + +P   F  A AAR+R+ +G P++P
Sbjct:  267 SKRRMQRSQWTTGRD--SEYGLGFDVSTVGDRRVVGHGGGYPGHITNTKLDPVDRLAVSVLTNAIDGAAGACVTTFFRLLGLALDPADSEPVPEG--VDLDRFRGRFASLWSVTDVARFGDRLYLLDPTADDPTHEPTALTVVDDRTLRMMGENGFGSRGEPMRYTFGDDG-IESVRGSSGGTGYPYDRFAAAAAARDRITIGRPLIP 469          
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Match: A0A6N9YLJ2_9ACTN (Beta-lactamase family protein n=2 Tax=Phytoactinopolyspora alkaliphila TaxID=1783498 RepID=A0A6N9YLJ2_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 4.000e-58
Identity = 118/207 (57.00%), Postives = 133/207 (64.25%), Query Frame = 1
Query:    1 SKRRMQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVDRLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGR--VDLSGFEGRFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTGYGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTPI 615
            SKR MQR EW V+G  G  YGLG A  EIG R VLGHGGGYPGHIT+T FDP DRLAVS LTNAIDGPA  +AA  V+LV+LA +   +  A  GR    L  F GRFATLWGV DVV LG +L  + PT  DPT     L V  D TLRI    GYGS GETL Y   D G V SVRGGS T+++P+     A    ERV +GTP+
Sbjct:  262 SKRLMQRAEWTVKGADGE-YGLGLARVEIGDRLVLGHGGGYPGHITKTLFDPHDRLAVSVLTNAIDGPAETLAAGLVRLVNLAVEQGGEGRAGDGRESAGLDRFTGRFATLWGVVDVVRLGHKLFLLRPTSDDPTQGAAPLTVEGDHTLRIAGGIGYGSFGETLEYVFGDHG-VESVRGGSATTSYPIERITAAAETLERVSVGTPL 466          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86422.20121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B337_9ACTN1.290e-8363.94Serine hydrolase n=1 Tax=Acidimicrobiaceae bacteri... [more]
A0A7W1R5Y6_9ACTN1.060e-6555.29Serine hydrolase n=1 Tax=Acidimicrobiia bacterium ... [more]
A0A7W0T7V6_9ACTN3.900e-6355.29Beta-lactamase family protein n=1 Tax=Acidimicrobi... [more]
A0A7K3M5M4_9ACTN1.250e-6056.59Serine hydrolase n=2 Tax=Phytoactinopolyspora meso... [more]
UPI0014086C681.090e-5956.40serine hydrolase n=1 Tax=Phytoactinopolyspora limi... [more]
A0A6L9S1V4_9ACTN1.440e-5955.19Beta-lactamase family protein n=2 Tax=Phytoactinop... [more]
A0A4R4RUG3_9ACTN1.330e-5856.31Class A beta-lactamase-related serine hydrolase n=... [more]
UPI0004B002502.840e-5855.83serine hydrolase n=1 Tax=Jiangella gansuensis TaxI... [more]
UPI000D6866133.710e-5853.37serine hydrolase n=1 Tax=Nocardioides speluncae Ta... [more]
A0A6N9YLJ2_9ACTN4.000e-5857.00Beta-lactamase family protein n=2 Tax=Phytoactinop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86422contigM-pyrifera_M_contig86422:211..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score176.0
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog1449976.KALB_5009
KEGG koko:K01286
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Beta-lactamase class C
EggNOG OGs2GN1H@201174,4E0PK@85010,COG1680@1,COG1680@2
EC3.4.16.4
COG Functional cat.V
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size633
Cds size621
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.9913988-CDS-M-pyrifera_M_contig86422:210..8311622816773.9913988-CDS-M-pyrifera_M_contig86422:210..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86422 211..831 -
1692278170.4580257-CDS-M-pyrifera_M_contig86422:210..8311692278170.4580257-CDS-M-pyrifera_M_contig86422:210..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86422 211..831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.0039742-UTR-M-pyrifera_M_contig86422:831..8431622816774.0039742-UTR-M-pyrifera_M_contig86422:831..843Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86422 832..843 -
1692278170.4725733-UTR-M-pyrifera_M_contig86422:831..8431692278170.4725733-UTR-M-pyrifera_M_contig86422:831..843Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86422 832..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86422.20121.1prot_M-pyrifera_M_contig86422.20121.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86422 211..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86422.20121.1

>prot_M-pyrifera_M_contig86422.20121.1 ID=prot_M-pyrifera_M_contig86422.20121.1|Name=mRNA_M-pyrifera_M_contig86422.20121.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
MQRTEWVVEGTGGTAYGLGFAVDEIGGRRVLGHGGGYPGHITRTYFDPVD
RLAVSALTNAIDGPALEMAAAGVKLVDLANKADADPAASGGRVDLSGFEG
RFATLWGVYDVVVLGGRLHQIAPTEADPTASPTLLDVVDDRTLRIVKTTG
YGSAGETLTYERNDDGSVRSVRGGSGTSAFPLAPFREALAARERVELGTP
ILPPAS*
back to top

mRNA from alignment at M-pyrifera_M_contig86422:211..843-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86422.20121.1 ID=mRNA_M-pyrifera_M_contig86422.20121.1|Name=mRNA_M-pyrifera_M_contig86422.20121.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=633bp|location=Sequence derived from alignment at M-pyrifera_M_contig86422:211..843- (Macrocystis pyrifera P11B4 male)
AGCAAGCGACGGATGCAGCGGACGGAATGGGTGGTCGAGGGAACCGGGGG CACCGCGTACGGCCTGGGGTTCGCGGTCGACGAGATCGGTGGTCGGCGAG TGCTCGGGCACGGAGGCGGCTATCCGGGGCACATCACTCGCACCTACTTC GATCCGGTCGATCGGCTTGCGGTGTCGGCGCTCACGAACGCGATCGACGG CCCGGCGCTCGAGATGGCAGCAGCAGGCGTGAAACTCGTCGATCTGGCGA ACAAGGCCGACGCCGACCCGGCAGCATCTGGCGGACGAGTCGATCTCAGC GGGTTCGAGGGGCGGTTCGCCACGCTCTGGGGCGTCTACGACGTCGTCGT GCTCGGTGGAAGACTCCACCAGATCGCGCCGACCGAGGCCGACCCCACCG CGAGCCCGACCCTGCTCGACGTCGTCGACGACCGCACACTGCGCATCGTC AAGACCACCGGCTACGGATCAGCCGGCGAGACGCTCACGTACGAACGAAA CGACGACGGTTCGGTGAGATCGGTCCGAGGTGGGAGTGGCACCTCGGCCT TCCCGCTGGCTCCGTTCCGAGAGGCCCTCGCCGCTCGGGAACGGGTCGAA CTGGGAACCCCGATCCTTCCGCCGGCGAGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86422:211..843-

>mRNA_M-pyrifera_M_contig86422.20121.1 ID=mRNA_M-pyrifera_M_contig86422.20121.1|Name=mRNA_M-pyrifera_M_contig86422.20121.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig86422:211..843- (Macrocystis pyrifera P11B4 male)
ATGCAGCGGACGGAATGGGTGGTCGAGGGAACCGGGGGCACCGCGTACGG
CCTGGGGTTCGCGGTCGACGAGATCGGTGGTCGGCGAGTGCTCGGGCACG
GAGGCGGCTATCCGGGGCACATCACTCGCACCTACTTCGATCCGGTCGAT
CGGCTTGCGGTGTCGGCGCTCACGAACGCGATCGACGGCCCGGCGCTCGA
GATGGCAGCAGCAGGCGTGAAACTCGTCGATCTGGCGAACAAGGCCGACG
CCGACCCGGCAGCATCTGGCGGACGAGTCGATCTCAGCGGGTTCGAGGGG
CGGTTCGCCACGCTCTGGGGCGTCTACGACGTCGTCGTGCTCGGTGGAAG
ACTCCACCAGATCGCGCCGACCGAGGCCGACCCCACCGCGAGCCCGACCC
TGCTCGACGTCGTCGACGACCGCACACTGCGCATCGTCAAGACCACCGGC
TACGGATCAGCCGGCGAGACGCTCACGTACGAACGAAACGACGACGGTTC
GGTGAGATCGGTCCGAGGTGGGAGTGGCACCTCGGCCTTCCCGCTGGCTC
CGTTCCGAGAGGCCCTCGCCGCTCGGGAACGGGTCGAACTGGGAACCCCG
ATCCTTCCGCCGGCGAGCTGAATGCAGCGGACGGAATGGGTGGTCGAGGG
AACCGGGGGCACCGCGTACGGCCTGGGGTTCGCGGTCGACGAGATCGGTG
GTCGGCGAGTGCTCGGGCACGGAGGCGGCTATCCGGGGCACATCACTCGC
ACCTACTTCGATCCGGTCGATCGGCTTGCGGTGTCGGCGCTCACGAACGC
GATCGACGGCCCGGCGCTCGAGATGGCAGCAGCAGGCGTGAAACTCGTCG
ATCTGGCGAACAAGGCCGACGCCGACCCGGCAGCATCTGGCGGACGAGTC
GATCTCAGCGGGTTCGAGGGGCGGTTCGCCACGCTCTGGGGCGTCTACGA
CGTCGTCGTGCTCGGTGGAAGACTCCACCAGATCGCGCCGACCGAGGCCG
ACCCCACCGCGAGCCCGACCCTGCTCGACGTCGTCGACGACCGCACACTG
CGCATCGTCAAGACCACCGGCTACGGATCAGCCGGCGAGACGCTCACGTA
CGAACGAAACGACGACGGTTCGGTGAGATCGGTCCGAGGTGGGAGTGGCA
CCTCGGCCTTCCCGCTGGCTCCGTTCCGAGAGGCCCTCGCCGCTCGGGAA
CGGGTCGAACTGGGAACCCCGATCCTTCCGCCGGCGAGCTGA
back to top