mRNA_M-pyrifera_M_contig10958.2012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10958.2012.1
Unique NamemRNA_M-pyrifera_M_contig10958.2012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10958.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10958contigM-pyrifera_M_contig10958:176..1060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size885
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10958.2012.1prot_M-pyrifera_M_contig10958.2012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10958 549..1025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.3223794-UTR-M-pyrifera_M_contig10958:175..5481622815606.3223794-UTR-M-pyrifera_M_contig10958:175..548Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10958 176..548 +
1692277484.3737187-UTR-M-pyrifera_M_contig10958:175..5481692277484.3737187-UTR-M-pyrifera_M_contig10958:175..548Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10958 176..548 +
1622815606.349414-UTR-M-pyrifera_M_contig10958:1025..10601622815606.349414-UTR-M-pyrifera_M_contig10958:1025..1060Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10958 1026..1060 +
1692277484.3941786-UTR-M-pyrifera_M_contig10958:1025..10601692277484.3941786-UTR-M-pyrifera_M_contig10958:1025..1060Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10958 1026..1060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.3356078-CDS-M-pyrifera_M_contig10958:548..10251622815606.3356078-CDS-M-pyrifera_M_contig10958:548..1025Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10958 549..1025 +
1692277484.3842058-CDS-M-pyrifera_M_contig10958:548..10251692277484.3842058-CDS-M-pyrifera_M_contig10958:548..1025Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10958 549..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10958.2012.1

>prot_M-pyrifera_M_contig10958.2012.1 ID=prot_M-pyrifera_M_contig10958.2012.1|Name=mRNA_M-pyrifera_M_contig10958.2012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MRREQERQRSLRYAYVEASRNQPSTPLLALGRTISYNITVENACIHSYTL
PVRVHLRRFLKMRRRKPQRYARTDFFSVGRSKGTGGEKRYNSCPCRRLPG
ANKRNLGTDTLCGDRMLAVGHAKGRPLLGYPAAVVRDTFYPSTSLKNISC
TIFKYVLP*
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mRNA from alignment at M-pyrifera_M_contig10958:176..1060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10958.2012.1 ID=mRNA_M-pyrifera_M_contig10958.2012.1|Name=mRNA_M-pyrifera_M_contig10958.2012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=885bp|location=Sequence derived from alignment at M-pyrifera_M_contig10958:176..1060+ (Macrocystis pyrifera P11B4 male)
CGAAAACATGAAAAAAAAAAAAAAAACTAACGGTCCGGTGTCTAGAGGCT
TTTGATTTTTCTCTTCGCTCGCAATAAAAAAAGGGCCGAGAGGCGCGCGT
TCAGCACTGCAGTAGTGCAAGGCATCTACTGAGTGACAGAGCAACAAGAA
AGGTAGCCACCAAGATTCACAGTAAAATAGGAAATTCGCTATTAGTCATC
ATTATACTGAAGTTAGTGTAGAACACGCAACATTCTCTCATAAGAAATCC
AGCCTGGATCGGGTCTTCTCCGGGACACCCCCCCCCCCTCTACGGCCTGC
CAGCCATATCGAACAGGTGCGCCTCTGCGTAACGTAGATCCTTTAGCTCG
GCCACGAAGTTCGCCGTACATGCATGCGCCGCGAGCAAGAACGCCAGCGT
TCTCTTAGGTATGCCTACGTCGAGGCCAGCCGTAACCAACCCTCTACGCC
CTTGCTCGCGCTGGGGCGTACAATATCTTATAACATCACAGTAGAAAACG
CCTGTATACACTCATACACTCTGCCCGTCCGTGTACACCTCCGGAGATTC
CTCAAAATGAGACGCAGAAAACCTCAACGATATGCCCGTACTGACTTTTT
TTCGGTAGGACGCTCAAAAGGGACGGGGGGGGAGAAACGCTACAACTCTT
GTCCGTGTAGACGGCTGCCGGGCGCCAACAAAAGGAACCTAGGAACCGAT
ACACTCTGCGGGGACAGAATGCTTGCTGTAGGGCACGCTAAAGGCCGCCC
CCTACTGGGGTACCCTGCAGCAGTAGTACGTGACACATTTTACCCTTCTA
CATCACTGAAAAACATATCCTGCACTATTTTCAAGTATGTTTTGCCGTAA
AACGTGGAATCAAAGGGACTACCGCAAAAGCTTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10958:176..1060+

>mRNA_M-pyrifera_M_contig10958.2012.1 ID=mRNA_M-pyrifera_M_contig10958.2012.1|Name=mRNA_M-pyrifera_M_contig10958.2012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig10958:176..1060+ (Macrocystis pyrifera P11B4 male)
ATGCGCCGCGAGCAAGAACGCCAGCGTTCTCTTAGGTATGCCTACGTCGA
GGCCAGCCGTAACCAACCCTCTACGCCCTTGCTCGCGCTGGGGCGTACAA
TATCTTATAACATCACAGTAGAAAACGCCTGTATACACTCATACACTCTG
CCCGTCCGTGTACACCTCCGGAGATTCCTCAAAATGAGACGCAGAAAACC
TCAACGATATGCCCGTACTGACTTTTTTTCGGTAGGACGCTCAAAAGGGA
CGGGGGGGGAGAAACGCTACAACTCTTGTCCGTGTAGACGGCTGCCGGGC
GCCAACAAAAGGAACCTAGGAACCGATACACTCTGCGGGGACAGAATGCT
TGCTGTAGGGCACGCTAAAGGCCGCCCCCTACTGGGGTACCCTGCAGCAG
TAGTACGTGACACATTTTACCCTTCTACATCACTGAAAAACATATCCTGC
ACTATTTTCAAGTATGTTTTGCCGTAAATGCGCCGCGAGCAAGAACGCCA
GCGTTCTCTTAGGTATGCCTACGTCGAGGCCAGCCGTAACCAACCCTCTA
CGCCCTTGCTCGCGCTGGGGCGTACAATATCTTATAACATCACAGTAGAA
AACGCCTGTATACACTCATACACTCTGCCCGTCCGTGTACACCTCCGGAG
ATTCCTCAAAATGAGACGCAGAAAACCTCAACGATATGCCCGTACTGACT
TTTTTTCGGTAGGACGCTCAAAAGGGACGGGGGGGGAGAAACGCTACAAC
TCTTGTCCGTGTAGACGGCTGCCGGGCGCCAACAAAAGGAACCTAGGAAC
CGATACACTCTGCGGGGACAGAATGCTTGCTGTAGGGCACGCTAAAGGCC
GCCCCCTACTGGGGTACCCTGCAGCAGTAGTACGTGACACATTTTACCCT
TCTACATCACTGAAAAACATATCCTGCACTATTTTCAAGTATGTTTTGCC
GTAA
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