mRNA_M-pyrifera_M_contig86381.20118.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86381.20118.1
Unique NamemRNA_M-pyrifera_M_contig86381.20118.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86381.20118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86381contigM-pyrifera_M_contig86381:108..848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size726
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.7505105-CDS-M-pyrifera_M_contig86381:107..8331622816773.7505105-CDS-M-pyrifera_M_contig86381:107..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86381 108..833 -
1692278170.2962933-CDS-M-pyrifera_M_contig86381:107..8331692278170.2962933-CDS-M-pyrifera_M_contig86381:107..833Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86381 108..833 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.7644699-UTR-M-pyrifera_M_contig86381:833..8481622816773.7644699-UTR-M-pyrifera_M_contig86381:833..848Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86381 834..848 -
1692278170.308509-UTR-M-pyrifera_M_contig86381:833..8481692278170.308509-UTR-M-pyrifera_M_contig86381:833..848Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86381 834..848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86381.20118.1prot_M-pyrifera_M_contig86381.20118.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86381 108..833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86381.20118.1

>prot_M-pyrifera_M_contig86381.20118.1 ID=prot_M-pyrifera_M_contig86381.20118.1|Name=mRNA_M-pyrifera_M_contig86381.20118.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=242bp
MGGNQTRTVAIPIYVLKHAPELQILQPTAGQLLGLDESIRVVVQTDWSLS
AAVDNIEFGFDKNGNGLIDKGEAVTPVGFKAAQPINFGNSHRLEVQLPTK
GIDPGPMAVLARAITEFTEPLPGQTPVAPTTPADPKKAAVTAPGGTIAVP
GSTAQQDMVFTTTGTIEGQVVTADGIPRKNATVKLENAGETVSDEQGRFT
FHDVPAGSHEVTAATNQRSGAAKAVVTPGQTVNLKIMIAVK*
back to top

mRNA from alignment at M-pyrifera_M_contig86381:108..848-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86381.20118.1 ID=mRNA_M-pyrifera_M_contig86381.20118.1|Name=mRNA_M-pyrifera_M_contig86381.20118.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=741bp|location=Sequence derived from alignment at M-pyrifera_M_contig86381:108..848- (Macrocystis pyrifera P11B4 male)
CTCCTCGCTCGGGCGATGGGAGGCAATCAGACTCGGACGGTTGCAATTCC
CATCTACGTGCTAAAGCATGCACCAGAACTGCAAATCTTGCAGCCTACCG
CAGGTCAGCTTTTGGGTCTCGACGAATCAATTAGGGTCGTGGTTCAAACC
GATTGGTCTCTTTCCGCCGCGGTCGACAATATAGAATTCGGCTTCGATAA
GAACGGAAATGGGCTGATCGACAAGGGGGAAGCCGTGACCCCAGTCGGGT
TCAAGGCGGCCCAACCCATCAATTTTGGCAATTCACATCGACTGGAAGTC
CAATTGCCGACCAAAGGCATCGACCCCGGACCGATGGCAGTGCTCGCAAG
GGCGATCACGGAATTCACCGAGCCCCTTCCTGGTCAAACACCTGTGGCGC
CTACAACCCCAGCCGACCCAAAGAAAGCTGCGGTGACTGCCCCCGGCGGA
ACGATTGCTGTTCCAGGATCTACAGCACAACAAGATATGGTCTTCACCAC
CACCGGCACCATTGAAGGGCAAGTGGTCACCGCCGATGGCATTCCACGCA
AAAATGCAACGGTCAAGCTTGAGAATGCCGGCGAAACTGTCAGCGATGAA
CAGGGAAGATTTACGTTCCATGATGTTCCTGCCGGTTCTCACGAAGTGAC
CGCTGCAACCAATCAGCGAAGCGGTGCCGCGAAAGCAGTCGTAACCCCAG
GTCAAACGGTGAACCTGAAAATTATGATTGCAGTTAAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig86381:108..848-

>mRNA_M-pyrifera_M_contig86381.20118.1 ID=mRNA_M-pyrifera_M_contig86381.20118.1|Name=mRNA_M-pyrifera_M_contig86381.20118.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1452bp|location=Sequence derived from alignment at M-pyrifera_M_contig86381:108..848- (Macrocystis pyrifera P11B4 male)
ATGGGAGGCAATCAGACTCGGACGGTTGCAATTCCCATCTACGTGCTAAA
GCATGCACCAGAACTGCAAATCTTGCAGCCTACCGCAGGTCAGCTTTTGG
GTCTCGACGAATCAATTAGGGTCGTGGTTCAAACCGATTGGTCTCTTTCC
GCCGCGGTCGACAATATAGAATTCGGCTTCGATAAGAACGGAAATGGGCT
GATCGACAAGGGGGAAGCCGTGACCCCAGTCGGGTTCAAGGCGGCCCAAC
CCATCAATTTTGGCAATTCACATCGACTGGAAGTCCAATTGCCGACCAAA
GGCATCGACCCCGGACCGATGGCAGTGCTCGCAAGGGCGATCACGGAATT
CACCGAGCCCCTTCCTGGTCAAACACCTGTGGCGCCTACAACCCCAGCCG
ACCCAAAGAAAGCTGCGGTGACTGCCCCCGGCGGAACGATTGCTGTTCCA
GGATCTACAGCACAACAAGATATGGTCTTCACCACCACCGGCACCATTGA
AGGGCAAGTGGTCACCGCCGATGGCATTCCACGCAAAAATGCAACGGTCA
AGCTTGAGAATGCCGGCGAAACTGTCAGCGATGAACAGGGAAGATTTACG
TTCCATGATGTTCCTGCCGGTTCTCACGAAGTGACCGCTGCAACCAATCA
GCGAAGCGGTGCCGCGAAAGCAGTCGTAACCCCAGGTCAAACGGTGAACC
TGAAAATTATGATTGCAGTTAAGTGAATGGGAGGCAATCAGACTCGGACG
GTTGCAATTCCCATCTACGTGCTAAAGCATGCACCAGAACTGCAAATCTT
GCAGCCTACCGCAGGTCAGCTTTTGGGTCTCGACGAATCAATTAGGGTCG
TGGTTCAAACCGATTGGTCTCTTTCCGCCGCGGTCGACAATATAGAATTC
GGCTTCGATAAGAACGGAAATGGGCTGATCGACAAGGGGGAAGCCGTGAC
CCCAGTCGGGTTCAAGGCGGCCCAACCCATCAATTTTGGCAATTCACATC
GACTGGAAGTCCAATTGCCGACCAAAGGCATCGACCCCGGACCGATGGCA
GTGCTCGCAAGGGCGATCACGGAATTCACCGAGCCCCTTCCTGGTCAAAC
ACCTGTGGCGCCTACAACCCCAGCCGACCCAAAGAAAGCTGCGGTGACTG
CCCCCGGCGGAACGATTGCTGTTCCAGGATCTACAGCACAACAAGATATG
GTCTTCACCACCACCGGCACCATTGAAGGGCAAGTGGTCACCGCCGATGG
CATTCCACGCAAAAATGCAACGGTCAAGCTTGAGAATGCCGGCGAAACTG
TCAGCGATGAACAGGGAAGATTTACGTTCCATGATGTTCCTGCCGGTTCT
CACGAAGTGACCGCTGCAACCAATCAGCGAAGCGGTGCCGCGAAAGCAGT
CGTAACCCCAGGTCAAACGGTGAACCTGAAAATTATGATTGCAGTTAAGT
GA
back to top