mRNA_M-pyrifera_M_contig86316.20106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86316.20106.1
Unique NamemRNA_M-pyrifera_M_contig86316.20106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86316.20106.1 vs. uniprot
Match: A0A1Z8WY87_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TMED70 TaxID=1986676 RepID=A0A1Z8WY87_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 5.220e-13
Identity = 32/113 (28.32%), Postives = 59/113 (52.21%), Query Frame = 1 
Query:    7 IVCLEISQVNANFAGIKPHLLRAIDKSRGLYNLPHVSQLILEAKMQVWVLYNDEHNIKGVGCTEILHRPERTVCSISLLAGGHIEDWD-EQFPVLEDFARHNKCDYIEFQGRP 342
            I  + +  +N  +  +K  + RA+ +S G +++  +   IL  + Q+W+ ++++ NI GVG TE+ + P + + +I  L G +   W  +     + F R N C  IE  GRP
Sbjct:   33 IALVPVEYLNHTWPDVKDEIERAVARSNGRWSIEFLYAAILNGQQQLWLAFDEDKNIDGVGTTEVAYYPAKMMLAIQFLGGKNFNSWVWDMLEKFKQFGRDNNCHGIEATGRP 145
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BLAST of mRNA_M-pyrifera_M_contig86316.20106.1 vs. uniprot
Match: A0A2E0R6U6_9BACT (Uncharacterized protein n=1 Tax=Kiritimatiellaceae bacterium TaxID=2026752 RepID=A0A2E0R6U6_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 5.700e-12
Identity = 32/112 (28.57%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:    7 IVCLEISQVNANFAGIKPHLLRAIDKSRGLYNLPHVSQLILEAKMQVWVLYNDEHNIKGVGCTEILHRPERTVCSISLLAGGHIEDWD-EQFPVLEDFARHNKCDYIEFQGR 339
            I  + +  +N  +  IK  + +A+ +S G +++  +   IL    Q+W+ ++++ NI GVG TEI + P +T+ ++  L G     W  +     ++F R N C  IE  GR
Sbjct:   33 IALVPVEYLNHTWPDIKDQIEKAVVRSHGRWSMEALYASILNGHQQLWLAFDEDKNIDGVGTTEIAYYPAKTMIAVQFLGGDKFNSWVWDMLEKFKEFGRQNGCQGIEATGR 144
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BLAST of mRNA_M-pyrifera_M_contig86316.20106.1 vs. uniprot
Match: A0A1Z9GFX6_9BACT (Uncharacterized protein n=1 Tax=Puniceicoccaceae bacterium TMED149 TaxID=1986788 RepID=A0A1Z9GFX6_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 3.380e-11
Identity = 32/97 (32.99%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:   52 IKPHLLRAIDKSRGLYNLPHVSQLILEAKMQVWVLYNDEHNIKGVGCTEILHRPERTVCSISLLAGGHIEDWD-EQFPVLEDFARHNKCDYIEFQGR 339
            +K  L RA+ +S G +NL  +   IL    Q+W+ ++D+  I GVG TEI   PE+ + +I  L G +  DW  +     + F +   C  IE   R
Sbjct:   49 VKGQLSRAVARSNGRWNLEFLYAAILNGNQQIWLAFDDDKRIDGVGTTEIYQYPEKKMLAIQFLGGDNFNDWVWDMLDKFKSFGKDTGCSGIEATAR 145
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BLAST of mRNA_M-pyrifera_M_contig86316.20106.1 vs. uniprot
Match: A0A2E7V4H8_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7V4H8_9RICK)

HSP 1 Score: 62.4 bits (150), Expect = 1.010e-9
Identity = 33/114 (28.95%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:    7 IVCLEISQVNANFAGIKPHLLRAIDKSRGLYNLPHVSQLILEAKMQVWVLYNDEHNIKGVGCTEILHRPERTVCSISLLAGGHIEDWDEQFPVLEDF---ARHNKCDYIEFQGR 339
            I  +  + +N  +  ++  L RA+ +S G +++  +   IL     +WV +N +  I GVG TE++  P + + +I  L G +  DW   + +L+ F   AR N C  IE   R
Sbjct:   35 IALVPSNYLNTLWPDVREQLARAVARSNGRWSMEVLYSAILNGHQHLWVAFNKDKEIDGVGTTELVDYPHKRMLAIQFLGGDNFNDW--VWDILDRFDSWARDNNCQGIEATAR 146
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BLAST of mRNA_M-pyrifera_M_contig86316.20106.1 vs. uniprot
Match: A0A2E4N493_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E4N493_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 3.090e-5
Identity = 26/100 (26.00%), Postives = 48/100 (48.00%), Query Frame = 1 
Query:   52 IKPHLLRAIDKSRGLYNLPHVSQLILEAKMQVWVLYNDEHNIKGVGCTEILHRPERTVCSISLLAGGH----IEDWDEQFPVLEDFARHNKCDYIEFQGR 339
            ++P L RA+D SRG Y++P +   +      +WV +N +  I     T+ ++ P R   S++ +         ++W      L ++A+ + C  IE  GR
Sbjct:   21 VEPFLKRAVDVSRGRYDMPSLYNDVKTGNQHLWVFHNADEEIVCAMTTQFMYYPLRVNLSVTFIGSDDESFSSDEWIRLMEQLMEWAKIHGCSGIESVGR 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86316.20106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1Z8WY87_9CHLR5.220e-1328.32Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2E0R6U6_9BACT5.700e-1228.57Uncharacterized protein n=1 Tax=Kiritimatiellaceae... [more]
A0A1Z9GFX6_9BACT3.380e-1132.99Uncharacterized protein n=1 Tax=Puniceicoccaceae b... [more]
A0A2E7V4H8_9RICK1.010e-928.95Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
A0A2E4N493_9BACT3.090e-526.00Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86316contigM-pyrifera_M_contig86316:2..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.2530487-CDS-M-pyrifera_M_contig86316:1..3431622816773.2530487-CDS-M-pyrifera_M_contig86316:1..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86316 2..343 -
1692278169.9848897-CDS-M-pyrifera_M_contig86316:1..3431692278169.9848897-CDS-M-pyrifera_M_contig86316:1..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86316 2..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86316.20106.1prot_M-pyrifera_M_contig86316.20106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86316 2..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86316.20106.1

>prot_M-pyrifera_M_contig86316.20106.1 ID=prot_M-pyrifera_M_contig86316.20106.1|Name=mRNA_M-pyrifera_M_contig86316.20106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MNIVCLEISQVNANFAGIKPHLLRAIDKSRGLYNLPHVSQLILEAKMQVW
VLYNDEHNIKGVGCTEILHRPERTVCSISLLAGGHIEDWDEQFPVLEDFA
RHNKCDYIEFQGRP
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mRNA from alignment at M-pyrifera_M_contig86316:2..343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86316.20106.1 ID=mRNA_M-pyrifera_M_contig86316.20106.1|Name=mRNA_M-pyrifera_M_contig86316.20106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig86316:2..343- (Macrocystis pyrifera P11B4 male)
ATGAATATTGTATGCTTAGAAATAAGCCAAGTAAACGCTAATTTCGCAGG
AATAAAGCCTCATTTGTTGCGGGCTATTGATAAATCAAGAGGGCTTTATA
ATCTGCCGCATGTCTCACAACTTATTCTTGAGGCTAAGATGCAAGTATGG
GTGCTTTATAATGATGAGCACAATATTAAAGGCGTTGGTTGTACGGAAAT
ATTGCACCGGCCAGAACGAACTGTGTGTTCTATATCTTTATTGGCTGGAG
GCCATATTGAGGATTGGGATGAGCAGTTCCCAGTATTAGAAGATTTTGCT
AGACACAATAAATGTGACTATATTGAGTTTCAAGGCAGACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86316:2..343-

>mRNA_M-pyrifera_M_contig86316.20106.1 ID=mRNA_M-pyrifera_M_contig86316.20106.1|Name=mRNA_M-pyrifera_M_contig86316.20106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig86316:2..343- (Macrocystis pyrifera P11B4 male)
ATGAATATTGTATGCTTAGAAATAAGCCAAGTAAACGCTAATTTCGCAGG
AATAAAGCCTCATTTGTTGCGGGCTATTGATAAATCAAGAGGGCTTTATA
ATCTGCCGCATGTCTCACAACTTATTCTTGAGGCTAAGATGCAAGTATGG
GTGCTTTATAATGATGAGCACAATATTAAAGGCGTTGGTTGTACGGAAAT
ATTGCACCGGCCAGAACGAACTGTGTGTTCTATATCTTTATTGGCTGGAG
GCCATATTGAGGATTGGGATGAGCAGTTCCCAGTATTAGAAGATTTTGCT
AGACACAATAAATGTGACTATATTGAGTTTCAAGGCAGACCAATGAATAT
TGTATGCTTAGAAATAAGCCAAGTAAACGCTAATTTCGCAGGAATAAAGC
CTCATTTGTTGCGGGCTATTGATAAATCAAGAGGGCTTTATAATCTGCCG
CATGTCTCACAACTTATTCTTGAGGCTAAGATGCAAGTATGGGTGCTTTA
TAATGATGAGCACAATATTAAAGGCGTTGGTTGTACGGAAATATTGCACC
GGCCAGAACGAACTGTGTGTTCTATATCTTTATTGGCTGGAGGCCATATT
GAGGATTGGGATGAGCAGTTCCCAGTATTAGAAGATTTTGCTAGACACAA
TAAATGTGACTATATTGAGTTTCAAGGCAGACCA
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