mRNA_M-pyrifera_M_contig86312.20104.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86312.20104.1
Unique NamemRNA_M-pyrifera_M_contig86312.20104.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86312.20104.1 vs. uniprot
Match: A0A832G1Q3_9BACT (Uncharacterized protein n=1 Tax=Ignavibacterium album TaxID=591197 RepID=A0A832G1Q3_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 4.570e-15
Identity = 58/169 (34.32%), Postives = 94/169 (55.62%), Query Frame = 1 
Query:   10 SCSATCQVD-LPINSEI-ITNLAVGDIVQMGNFYINVAEISSSSGGFYDGSGYVYVPFLNTNIDVAFSDLNVNTDFVLVSGSVLANSDS-NLLTDNLTDLEGGMTFDTD-EIVGLGDYVDSENRLVSQMDGSSVLGLPLALDNTVGQTSHNIIITGMSFEASTASLNAV 504
            SC A C+V  +P +  + +T   VG  +Q+G F +NV EI+ S G   +G G + VPF    I V+F+++ VN    +  G+V A  D+ +++  +L    G +T  +D E+  L  +V+  +RLVS   GS+ +G+P+ LD T+    + I I G+ F    A LNA+
Sbjct:  570 SCLADCEVPPIPASERVPVTTAIVGSNLQIGLFTLNVTEINWS-GQTANGRGTISVPFFRAPIKVSFTNIRVNAANKIYDGTVKAEYDNESVIPPSLISAGGMITGMSDTELQNLNSFVNQASRLVSAFTGSTPVGMPIGLDQTIEGRRYTIAIVGLDFTPERAELNAM 737
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BLAST of mRNA_M-pyrifera_M_contig86312.20104.1 vs. uniprot
Match: UPI00198429B7 (Uncharacterized protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=UPI00198429B7)

HSP 1 Score: 67.8 bits (164), Expect = 4.880e-10
Identity = 49/174 (28.16%), Postives = 89/174 (51.15%), Query Frame = 1 
Query:   49 SEIITNLAVGDIVQMGNFYINVAEISSSSGGFYDGSGYVYVPFLNTNIDVAFSDLNVNTDFVLVSGSVLA-NSDSNLLTDNLTDLEGGMTFDTDEIVGLGDYVDSENRLVSQMDGSSVLGLPLALDN-------------------TVGQTSHNIIITGMSFEASTASLNAVTT 510
            S + + L++GD + +G F + + ++  S+  FY G+G +Y+PFL + + V++++L +N D  + +G V + N ++N L   L +++   ++  D I  +  + D     + Q  G     L  AL N                   T  Q+S  II+TG+ F+A+ A+LNAV T
Sbjct:  318 SPLTSVLSIGDKINVGYFTMEITDVQYSN-EFYTGAGNIYLPFLFSKLKVSYNNLQINEDRRVFAGQVYSVNPENNSLIPALFNIQNPASYTDDGIDIVTSFTDQTASALDQYIGDPSANLVSALANIPEQSAIPITVPIGMDMSTTNNQSSFTIIVTGVKFDATKATLNAVMT 490
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BLAST of mRNA_M-pyrifera_M_contig86312.20104.1 vs. uniprot
Match: A0A2W4QWU7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2W4QWU7_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 9.310e-10
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 1 
Query:    1 DATSCSATCQVDLPINSEIITNLAVGDIVQMGNFYINVAEISSSSGGFYDGSGYVYVPFLNTNIDVAFSDLNVNTDF-VLVSGS-VLANSDSNLLTDNLTDLEGGMTFDTDEIVGLGDYVDSENRLVSQM--DGSSVLGLPLALDNTVGQTSHNIIITGMSFEASTASLNAVTTITAEN 525
            D+ +CSA C V  P N+    ++A GD V++G F + V   ++++     G+G + V FLNT I+V ++++ VNTD  V  +GS + A  D   L+ N    +     +   I  L       +R VS    + S  +GLP+ LD    Q + N++I G+ F  + A++NA+T +   N
Sbjct:  481 DSQACSADCNVPAPANTSS-KSIAPGDEVKVGKFTMTVTTGNATA-----GTGRIAVNFLNTPINVQWNNIQVNTDNEVFGNGSKITAGMDFAALSGNAVTTQTTPNPNLGSIASLMQTAQQASRRVSMFPANNSQSIGLPVTLD----QGNFNLVILGLIFTPTGATMNAITAVELTN 649
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BLAST of mRNA_M-pyrifera_M_contig86312.20104.1 vs. uniprot
Match: A0A370QGD2_9FLAO (Uncharacterized protein n=1 Tax=Marinirhabdus gelatinilytica TaxID=1703343 RepID=A0A370QGD2_9FLAO)

HSP 1 Score: 63.9 bits (154), Expect = 1.150e-8
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 DATSCSATCQVDLPINSEIITNLAVGDIVQMGNFYINVAEISSSSGGFYDGSGYVYVPFLNTNIDVAFSDLNVNTDFVLVSGSVLANSDSNL 276
            D+  C ATC V++P N+ +++N++ G+ V +G F + V +   S  GF  G+G VY  FL   I V FS+L +NT+  +  G   A  D  +
Sbjct:  337 DSPDCIATCTVNVPQNTTLLSNISPGETVSIGKFSMEVVQAQFSGNGF-TGTGVVYTAFLEIPILVEFSNLKINTEKQVFDGKATATLDGGM 427
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BLAST of mRNA_M-pyrifera_M_contig86312.20104.1 vs. uniprot
Match: UPI001C5AA2AD (fibronectin type III domain-containing protein n=1 Tax=Flavobacterium sp. NKUCC04_CG TaxID=2842121 RepID=UPI001C5AA2AD)

HSP 1 Score: 61.2 bits (147), Expect = 9.650e-8
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 1 
Query:   10 SCSATCQVDLPINSEIITNLAVGDIVQMGNFYINVAEISSSSGGFYDGSGYVYVPFL-NTNIDVAFSDLNVNTDFVLVSGSVLANSDSNLLTDNLTDLEGGMTFDTDEIVGLGDYVDSENRLVSQMDGSSVLGLPLALDNTVGQTSHNIIITG 465
            SC     ++L IN  I++NL V +    G+F + V E++   GG Y G GY+ VP+L +T I V F ++ +NTD+ L+SG +    D +    N++D+E        ++ G G             DG     +P  +D+ V   + +III G
Sbjct:  387 SCGLLPDINL-INKAILSNLIVTETFYAGDFPVKVLELNGD-GGVYTGKGYIIVPYLADTKIAVTFENIQINTDYQLISGQLETTYDPDWK--NVSDME--------DLTGSG------------ADGKIDKEIPFPIDSIVIDNNGDIIIKG 515
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86312.20104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A832G1Q3_9BACT4.570e-1534.32Uncharacterized protein n=1 Tax=Ignavibacterium al... [more]
UPI00198429B74.880e-1028.16Uncharacterized protein n=1 Tax=Saprospiraceae bac... [more]
A0A2W4QWU7_9BACT9.310e-1031.28Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
A0A370QGD2_9FLAO1.150e-835.87Uncharacterized protein n=1 Tax=Marinirhabdus gela... [more]
UPI001C5AA2AD9.650e-830.72fibronectin type III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86312contigM-pyrifera_M_contig86312:108..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.1
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog945713.IALB_3159
KEGG koko:K02057
KEGG TC3.A.1.2
KEGG ModuleM00221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase involved in DNA repair
EggNOG OGsCOG0419@1,COG0419@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.1790543-CDS-M-pyrifera_M_contig86312:107..6321622816773.1790543-CDS-M-pyrifera_M_contig86312:107..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86312 108..632 -
1692278169.9537537-CDS-M-pyrifera_M_contig86312:107..6321692278169.9537537-CDS-M-pyrifera_M_contig86312:107..632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86312 108..632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86312.20104.1prot_M-pyrifera_M_contig86312.20104.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86312 108..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86312.20104.1

>prot_M-pyrifera_M_contig86312.20104.1 ID=prot_M-pyrifera_M_contig86312.20104.1|Name=mRNA_M-pyrifera_M_contig86312.20104.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
DATSCSATCQVDLPINSEIITNLAVGDIVQMGNFYINVAEISSSSGGFYD
GSGYVYVPFLNTNIDVAFSDLNVNTDFVLVSGSVLANSDSNLLTDNLTDL
EGGMTFDTDEIVGLGDYVDSENRLVSQMDGSSVLGLPLALDNTVGQTSHN
IIITGMSFEASTASLNAVTTITAEN
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mRNA from alignment at M-pyrifera_M_contig86312:108..632-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86312.20104.1 ID=mRNA_M-pyrifera_M_contig86312.20104.1|Name=mRNA_M-pyrifera_M_contig86312.20104.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig86312:108..632- (Macrocystis pyrifera P11B4 male)
GATGCTACTTCATGTAGTGCAACATGTCAGGTGGATTTGCCTATCAACTC
GGAGATTATTACAAATCTTGCGGTTGGGGATATTGTGCAGATGGGCAATT
TTTATATAAATGTGGCCGAAATTAGTTCCTCATCCGGTGGGTTTTATGAT
GGTTCAGGCTACGTTTATGTCCCATTCCTCAATACCAATATTGATGTCGC
TTTTAGTGACCTAAATGTCAATACAGATTTTGTATTGGTTTCGGGGAGCG
TGCTCGCAAATAGTGATTCTAACCTGCTTACAGATAACCTGACAGACCTG
GAAGGGGGCATGACCTTTGATACAGATGAAATAGTTGGACTAGGTGACTA
TGTAGACAGCGAGAACCGGTTGGTGAGCCAAATGGATGGATCATCGGTTC
TGGGTTTGCCACTCGCCTTGGATAATACCGTCGGACAGACAAGCCATAAC
ATCATTATCACAGGAATGTCTTTTGAAGCGAGTACCGCTTCTCTCAACGC
AGTGACAACTATTACTGCAGAAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86312:108..632-

>mRNA_M-pyrifera_M_contig86312.20104.1 ID=mRNA_M-pyrifera_M_contig86312.20104.1|Name=mRNA_M-pyrifera_M_contig86312.20104.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig86312:108..632- (Macrocystis pyrifera P11B4 male)
GATGCTACTTCATGTAGTGCAACATGTCAGGTGGATTTGCCTATCAACTC
GGAGATTATTACAAATCTTGCGGTTGGGGATATTGTGCAGATGGGCAATT
TTTATATAAATGTGGCCGAAATTAGTTCCTCATCCGGTGGGTTTTATGAT
GGTTCAGGCTACGTTTATGTCCCATTCCTCAATACCAATATTGATGTCGC
TTTTAGTGACCTAAATGTCAATACAGATTTTGTATTGGTTTCGGGGAGCG
TGCTCGCAAATAGTGATTCTAACCTGCTTACAGATAACCTGACAGACCTG
GAAGGGGGCATGACCTTTGATACAGATGAAATAGTTGGACTAGGTGACTA
TGTAGACAGCGAGAACCGGTTGGTGAGCCAAATGGATGGATCATCGGTTC
TGGGTTTGCCACTCGCCTTGGATAATACCGTCGGACAGACAAGCCATAAC
ATCATTATCACAGGAATGTCTTTTGAAGCGAGTACCGCTTCTCTCAACGC
AGTGACAACTATTACTGCAGAAAATGATGCTACTTCATGTAGTGCAACAT
GTCAGGTGGATTTGCCTATCAACTCGGAGATTATTACAAATCTTGCGGTT
GGGGATATTGTGCAGATGGGCAATTTTTATATAAATGTGGCCGAAATTAG
TTCCTCATCCGGTGGGTTTTATGATGGTTCAGGCTACGTTTATGTCCCAT
TCCTCAATACCAATATTGATGTCGCTTTTAGTGACCTAAATGTCAATACA
GATTTTGTATTGGTTTCGGGGAGCGTGCTCGCAAATAGTGATTCTAACCT
GCTTACAGATAACCTGACAGACCTGGAAGGGGGCATGACCTTTGATACAG
ATGAAATAGTTGGACTAGGTGACTATGTAGACAGCGAGAACCGGTTGGTG
AGCCAAATGGATGGATCATCGGTTCTGGGTTTGCCACTCGCCTTGGATAA
TACCGTCGGACAGACAAGCCATAACATCATTATCACAGGAATGTCTTTTG
AAGCGAGTACCGCTTCTCTCAACGCAGTGACAACTATTACTGCAGAAAAT
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