mRNA_M-pyrifera_M_contig8622.20091.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8622.20091.1
Unique NamemRNA_M-pyrifera_M_contig8622.20091.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8622.20091.1 vs. uniprot
Match: D8LDV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV1_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 3.280e-67
Identity = 116/197 (58.88%), Postives = 133/197 (67.51%), Query Frame = 1 
Query:    1 IPLSQVRSFIGVNEGPTPRDAVLLKSLLIVHEGIAWVTDRPMYRYYREEIVPTALALYNSLPQDALEGVDLEVGHTLPESMFVMTGTVRPSWPRWGGNPSSPP--PPLRQPSIG-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSWGAR-FMRGPWMVFRVARQDYLDFYKGQAAALDQLVGGSSTELEDML 579
            +PLS++R+FIGV+ GPTPRDAVLLKSLLIVHEGIAW  DRP YR YREEI+PTAL LY SL QD LEGVDLEVGHTLPES+FV+TGT RPSWPRWGG+PS+    P L +   G G                                    AR F+ GPW+VFRVAR DYL+FY+ QAA LDQ VGGS  E+E+ML
Sbjct:    1 MPLSRIRAFIGVDGGPTPRDAVLLKSLLIVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRLIEGGAGRGSNDVDGPDTTRNNGSGGTGFGRSPREASGRGRGMTRAREFLPGPWVVFRVARGDYLEFYRDQAAVLDQAVGGSVAEMENML 197
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BLAST of mRNA_M-pyrifera_M_contig8622.20091.1 vs. uniprot
Match: A0A6H5KV82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV82_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 5.260e-61
Identity = 114/199 (57.29%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:    1 IPLSQVRSFIGVNEGPTPRDAVLLKSLLIVHEGIAWVTDRPMYRYYREEIVPTALALYNSLPQDALEGVDLEVGHTLPESMFVMTGTVRPSWPRWGGNPSSPPPPLRQPSIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSWGARFMR------GPWMVFRVARQDYLDFYKGQAAALDQLVGGSSTELEDML 579
            +PLS++R+FIGV+ GPTPRDAVLLKSLL+VHEGIAW  DRP YR YREEI+PTAL LY SL QD LEGVDLEVGHTLPES+FV+TGT RPSWPRWGG+PS+     R   I G                                S  G   MR      GPW+VF VAR DYL+FY+ QAA LDQ VGGS++E+E+ML
Sbjct:  733 MPLSRIRAFIGVDGGPTPRDAVLLKSLLVVHEGIAWAVDRPHYRNYREEIIPTALELYASLAQDVLEGVDLEVGHTLPESIFVVTGTARPSWPRWGGSPSAATATPRL--IEGGAGRGSNDVSDPNIRRSNGSGGTGFGRSPREASDRGCVMMRAREFLPGPWVVFHVARADYLEFYRDQAAVLDQAVGGSASEMENML 929
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8622.20091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDV1_ECTSI3.280e-6758.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV82_9PHAE5.260e-6157.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8622contigM-pyrifera_M_contig8622:6525..8683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003450.1
Exons3
Model size585
Cds size585
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8622.20091.1prot_M-pyrifera_M_contig8622.20091.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8622 6525..8683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.6242373-CDS-M-pyrifera_M_contig8622:6524..66661622816772.6242373-CDS-M-pyrifera_M_contig8622:6524..6666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8622 6525..6666 -
1692278169.6807964-CDS-M-pyrifera_M_contig8622:6524..66661692278169.6807964-CDS-M-pyrifera_M_contig8622:6524..6666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8622 6525..6666 -
1622816772.6380117-CDS-M-pyrifera_M_contig8622:6753..70651622816772.6380117-CDS-M-pyrifera_M_contig8622:6753..7065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8622 6754..7065 -
1692278169.6934352-CDS-M-pyrifera_M_contig8622:6753..70651692278169.6934352-CDS-M-pyrifera_M_contig8622:6753..7065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8622 6754..7065 -
1622816772.6510437-CDS-M-pyrifera_M_contig8622:8552..86831622816772.6510437-CDS-M-pyrifera_M_contig8622:8552..8683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8622 8553..8683 -
1692278169.70481-CDS-M-pyrifera_M_contig8622:8552..86831692278169.70481-CDS-M-pyrifera_M_contig8622:8552..8683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8622 8553..8683 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8622.20091.1

>prot_M-pyrifera_M_contig8622.20091.1 ID=prot_M-pyrifera_M_contig8622.20091.1|Name=mRNA_M-pyrifera_M_contig8622.20091.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
IPLSQVRSFIGVNEGPTPRDAVLLKSLLIVHEGIAWVTDRPMYRYYREEI
VPTALALYNSLPQDALEGVDLEVGHTLPESMFVMTGTVRPSWPRWGGNPS
SPPPPLRQPSIGGGGGGDGGGGGDSSSSSSSSSSSSGSGSGSGGGSSWGA
RFMRGPWMVFRVARQDYLDFYKGQAAALDQLVGGSSTELEDMLC*
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mRNA from alignment at M-pyrifera_M_contig8622:6525..8683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8622.20091.1 ID=mRNA_M-pyrifera_M_contig8622.20091.1|Name=mRNA_M-pyrifera_M_contig8622.20091.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2159bp|location=Sequence derived from alignment at M-pyrifera_M_contig8622:6525..8683- (Macrocystis pyrifera P11B4 male)
ATTCCACTGAGCCAAGTCCGAAGCTTCATCGGGGTGAACGAGGGGCCGAC
TCCGCGAGACGCCGTCCTGCTGAAGTCGCTCCTGATAGTGCATGAAGGAA
TCGCCTGGGTCACTGATCGCCCTATGTACAGGTGCTATGAACATACCTTA
ACCCGTTTTGATGCCGCAGAAATGGTCCCAGCTTTTGCGGGTGCTGTTGT
TGTTTTCGCTGTTGTCGCCGCAGAGTATTTTGCAAGAGCGAGCGTTTTTT
GCGTGAAAGTGGGAGAGTTTCCTGGCCAGCAACGGAATGCCGGAATCGCT
TTTTTGCTCAAGAGGCAGCACGGCATAGATGCCTTGACTTGTCAGTGGTG
TTGCACGAGTTAGTTTGCAAGGTGGTGTTGCATTCAGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCACCCCACACCCCCCCCCCCCGCCCCCCC
CCGGGAGCGGCCCCCCCCCGCGGCCCGCCCCCTGGCCCCCCTTCTTCNNN
NNNNNNNTGTGGCGCTGCTGGAGACGTCGAGGTTCTGCTTGTCGTTGTTG
GTGTTTGGTGTGTCCGTGCGTTTGGGTCCGGTTCCCCCCCCCCCCCCCCC
CCCCCCCCCCACCTAAATCTAAATCCCCCCCCTACCTAAATCTTGGGGAT
ATTCACTCTCCCCATTCTTTTAATCGGGTTCCACCCCTCGGCAAGTATAT
CCCTCACGCACCATGAGGGCTCGATTCCTCCACAGCTCCCTCAAAACCAT
TGGCTCACACCCGGAAGTGGCCACACCGGAAATTGAGTTAACTCATTGAA
GTTATCCTCCATGTGCAAGTCCACCTCACTATCGGCTCTTGGCAGGATGC
AGCAGCTCGCCCTTCATGCGACTCGCCCAACACCTCACGGCGCTTCGCGC
TTCGTGCAAGCAGTGCCTGCCTGGTCGGTGAAAACCTGACGTGCTCCGTC
CCGGCATTGTAGGGATGCGAGGAGCTATGATCATAGGATTACGGCCATGC
ATGATATCGGTACACCCCCCCCCTCGTCCAATTCCGCCCCAAGAACCGTG
TCCCGGTAGAGCGTAGCTCCTCAATCGAGGAGCTCGTACCCGATACGAAG
CAGTGCCAGGTTCTTTGAATCCGATGCATTTTTGATAATGCCGTTCATTA
GATAGCCAACCCGTGGGTTTGTATACGAGTATTGCGTCCCTCTTTTTTAT
CAAATCAATTCCTTACGACCCAGCCCTCCCCAACCCCAACAACCCCCCCC
CCCCAGTTTTCTCAGAGCAATTCTATGTTTTTTATTGCGTTTACCCCAAC
CCCAACCACCCCCAAATATCACCCCCCCCCCCCTAGTTTTTCTCGGAGCT
TTGTTGTAGGGGGTGGAGGTTCAATAGACGCTCCCATAGTCGGTCTGATA
ATTTTATCATTGTACTAAAGGCAGCCACTACCTGGGTACTATCGGGCCGC
ACTTTCCTTGCCCTTCGCCTCGAATCGCGATGGCTGCGAGATGTACAGAG
CTCCCCTCGTGACAAGCCCGCGGCACACGTCCCACCCCCCCCTCCTCTTC
CTCCTTCGATCCCTCGTCAAGTGCACCCACCCACCCCTCCCCTCCCTTGG
ACCATTTTCTCCCCACAGGTACTACCGGGAGGAGATTGTCCCCACCGCCC
TGGCCCTCTACAACTCCTTGCCGCAAGACGCGCTGGAAGGCGTTGACCTT
GAGGTCGGCCACACGCTCCCCGAGAGCATGTTCGTCATGACCGGTACCGT
CCGCCCTTCTTGGCCTCGGTGGGGTGGAAACCCCTCTTCGCCACCCCCGC
CGCTTAGGCAGCCCAGTATCGGCGGCGGCGGTGGCGGCGACGGCGGCGGC
GGCGGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCGGCAG
CGGCAGCGGCAGCGGCGGAGGTAGCAGTTGGTTTGGAGGTAGTTTCATCA
GAGGGAACCCAATGCGCGGCGGCAGCGGTGGCGGCGGCACGGGGAGCGCA
GGAGGGTGGGGGGGGAGGGGGGCAAGGTTTATGCGGGGACCGTGGATGGT
GTTCCGTGTGGCGCGCCAGGACTACCTTGACTTTTATAAAGGCCAGGCTG
CAGCACTCGATCAGTTGGTGGGAGGGTCGAGTACCGAGCTGGAAGACATG
TTGTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8622:6525..8683-

>mRNA_M-pyrifera_M_contig8622.20091.1 ID=mRNA_M-pyrifera_M_contig8622.20091.1|Name=mRNA_M-pyrifera_M_contig8622.20091.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig8622:6525..8683- (Macrocystis pyrifera P11B4 male)
ATTCCACTGAGCCAAGTCCGAAGCTTCATCGGGGTGAACGAGGGGCCGAC
TCCGCGAGACGCCGTCCTGCTGAAGTCGCTCCTGATAGTGCATGAAGGAA
TCGCCTGGGTCACTGATCGCCCTATGTACAGATTCCACTGAGCCAAGTCC
GAAGCTTCATCGGGGTGAACGAGGGGCCGACTCCGCGAGACGCCGTCCTG
CTGAAGTCGCTCCTGATAGTGCATGAAGGAATCGCCTGGGTCACTGATCG
CCCTATGTACAGGTACTACCGGGAGGAGATTGTCCCCACCGCCCTGGCCC
TCTACAACTCCTTGCCGCAAGACGCGCTGGAAGGCGTTGACCTTGAGGTC
GGCCACACGCTCCCCGAGAGCATGTTCGTCATGACCGGTACCGTCCGCCC
TTCTTGGCCTCGGTGGGGTGGAAACCCCTCTTCGCCACCCCCGCCGCTTA
GGCAGCCCAGTATCGGCGGCGGCGGTGGCGGCGACGGCGGCGGCGGCGGC
GACAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCGGCAGCGGCAG
CGGCAGCGGCGGAGGTAGCAGTTGGTACTACCGGGAGGAGATTGTCCCCA
CCGCCCTGGCCCTCTACAACTCCTTGCCGCAAGACGCGCTGGAAGGCGTT
GACCTTGAGGTCGGCCACACGCTCCCCGAGAGCATGTTCGTCATGACCGG
TACCGTCCGCCCTTCTTGGCCTCGGTGGGGTGGAAACCCCTCTTCGCCAC
CCCCGCCGCTTAGGCAGCCCAGTATCGGCGGCGGCGGTGGCGGCGACGGC
GGCGGCGGCGGCGACAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAG
CGGCAGCGGCAGCGGCAGCGGCGGAGGTAGCAGTTGGGGGGCAAGGTTTA
TGCGGGGACCGTGGATGGTGTTCCGTGTGGCGCGCCAGGACTACCTTGAC
TTTTATAAAGGCCAGGCTGCAGCACTCGATCAGTTGGTGGGAGGGTCGAG
TACCGAGCTGGAAGACATGTTGTGCTGAGGGGGCAAGGTTTATGCGGGGA
CCGTGGATGGTGTTCCGTGTGGCGCGCCAGGACTACCTTGACTTTTATAA
AGGCCAGGCTGCAGCACTCGATCAGTTGGTGGGAGGGTCGAGTACCGAGC
TGGAAGACATGTTGTGCTGA
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