mRNA_M-pyrifera_M_contig8621.20090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8621.20090.1
Unique NamemRNA_M-pyrifera_M_contig8621.20090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8621.20090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8621contigM-pyrifera_M_contig8621:1076..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size436
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8621.20090.1prot_M-pyrifera_M_contig8621.20090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8621 1113..1448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.5666392-UTR-M-pyrifera_M_contig8621:1075..11121622816772.5666392-UTR-M-pyrifera_M_contig8621:1075..1112Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8621 1076..1112 +
1692278169.6319885-UTR-M-pyrifera_M_contig8621:1075..11121692278169.6319885-UTR-M-pyrifera_M_contig8621:1075..1112Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8621 1076..1112 +
1622816772.590232-UTR-M-pyrifera_M_contig8621:1448..15111622816772.590232-UTR-M-pyrifera_M_contig8621:1448..1511Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8621 1449..1511 +
1692278169.6682937-UTR-M-pyrifera_M_contig8621:1448..15111692278169.6682937-UTR-M-pyrifera_M_contig8621:1448..1511Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8621 1449..1511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.5776596-CDS-M-pyrifera_M_contig8621:1112..14481622816772.5776596-CDS-M-pyrifera_M_contig8621:1112..1448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8621 1113..1448 +
1692278169.647622-CDS-M-pyrifera_M_contig8621:1112..14481692278169.647622-CDS-M-pyrifera_M_contig8621:1112..1448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8621 1113..1448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8621.20090.1

>prot_M-pyrifera_M_contig8621.20090.1 ID=prot_M-pyrifera_M_contig8621.20090.1|Name=mRNA_M-pyrifera_M_contig8621.20090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MLLRYMYRAACSCSTMELCARSHAPQYPSHVTHHPSRSHIVGRIPSVTRH
ASHVTRHASHVTCHLASGIRHVPHVTRHTSPATRGGEKGKAKAKSTTGNT
EARLNVKKNKS*
back to top

mRNA from alignment at M-pyrifera_M_contig8621:1076..1511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8621.20090.1 ID=mRNA_M-pyrifera_M_contig8621.20090.1|Name=mRNA_M-pyrifera_M_contig8621.20090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=436bp|location=Sequence derived from alignment at M-pyrifera_M_contig8621:1076..1511+ (Macrocystis pyrifera P11B4 male)
CCCACTCGTGCTCTCGCTCTTTCAGTCTGTACCTGGTATGTTATTACGTT
ATATGTATAGAGCTGCTTGTTCGTGCAGTACGATGGAGCTGTGCGCCCGG
TCACACGCCCCACAATACCCGTCACACGTCACACATCACCCCTCACGCTC
GCACATTGTAGGTCGAATACCATCCGTCACCCGTCACGCGTCACACGTCA
CACGTCACGCGTCACACGTTACATGTCACTTAGCATCCGGAATCCGTCAC
GTGCCGCACGTCACACGTCACACTTCACCAGCGACTCGAGGAGGCGAAAA
AGGCAAAGCAAAAGCCAAGTCCACCACAGGAAACACAGAAGCGCGTCTCA
ACGTAAAAAAAAACAAGTCTTGAACGCGCGCCCAACAGTCCCAAACTCAA
TCCTCCATCCCCGTCTTCTGCCCCACGAATTCCGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8621:1076..1511+

>mRNA_M-pyrifera_M_contig8621.20090.1 ID=mRNA_M-pyrifera_M_contig8621.20090.1|Name=mRNA_M-pyrifera_M_contig8621.20090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig8621:1076..1511+ (Macrocystis pyrifera P11B4 male)
ATGTTATTACGTTATATGTATAGAGCTGCTTGTTCGTGCAGTACGATGGA
GCTGTGCGCCCGGTCACACGCCCCACAATACCCGTCACACGTCACACATC
ACCCCTCACGCTCGCACATTGTAGGTCGAATACCATCCGTCACCCGTCAC
GCGTCACACGTCACACGTCACGCGTCACACGTTACATGTCACTTAGCATC
CGGAATCCGTCACGTGCCGCACGTCACACGTCACACTTCACCAGCGACTC
GAGGAGGCGAAAAAGGCAAAGCAAAAGCCAAGTCCACCACAGGAAACACA
GAAGCGCGTCTCAACGTAAAAAAAAACAAGTCTTGAATGTTATTACGTTA
TATGTATAGAGCTGCTTGTTCGTGCAGTACGATGGAGCTGTGCGCCCGGT
CACACGCCCCACAATACCCGTCACACGTCACACATCACCCCTCACGCTCG
CACATTGTAGGTCGAATACCATCCGTCACCCGTCACGCGTCACACGTCAC
ACGTCACGCGTCACACGTTACATGTCACTTAGCATCCGGAATCCGTCACG
TGCCGCACGTCACACGTCACACTTCACCAGCGACTCGAGGAGGCGAAAAA
GGCAAAGCAAAAGCCAAGTCCACCACAGGAAACACAGAAGCGCGTCTCAA
CGTAAAAAAAAACAAGTCTTGA
back to top