mRNA_M-pyrifera_M_contig86184.20087.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86184.20087.1
Unique NamemRNA_M-pyrifera_M_contig86184.20087.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: I2CPD2_NANGC (U2-associated protein SR140 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPD2_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 1.440e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   88 DGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            DG   +TNL +  L   TTE+ L  VFGRFG+V SVK+M PR++EERA+G   G+V+F
Sbjct:  188 DGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSF 245
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: F0XVQ8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVQ8_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.510e-9
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   49 AAPAPTIEAYKAADGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            AAP P  E      G + +TNL ++ L    TE+ L  VFG FG + SVKVM PR+++ER +G  RG+V+F
Sbjct:   29 AAP-PAYEGRTEGTGYQGTTNLCVNNLAATVTEEKLMQVFGAFGDIFSVKVMWPRSEDERRRGRNRGFVSF 98
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: A0A6L5D6C5_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5D6C5_9INSE)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   52 APAPTIEAYKAADGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            APAPT    K   G   +TNL +  L    TEQ L  VFG++G + S+K+M PR+DEE+A+G   G+VAF
Sbjct:  171 APAPTT---KGESGDPTTTNLYLGNLNPKITEQQLMEVFGKYGPLASIKIMWPRSDEEKARGRNCGFVAF 237
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: A0A7S4E426_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E426_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.550e-9
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   88 DGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            DG   +TNL +  +  ATTE  L  +F R+GQ+ESVK+M PRTDEER +G   G+V +
Sbjct:   99 DGDRSTTNLYVGNISPATTEAQLAKIFARYGQLESVKIMWPRTDEERRRGRNCGFVQY 156
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: W7U2X6_9STRA (U2 snrnp-associated splicing factor putative n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2X6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.570e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   88 DGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            DG   +TNL +  L   TTE+ L  VFGRFG+V SVK+M PR++EERA+G   G+V+F
Sbjct:  188 DGDPHTTNLHVGNLSPLTTEERLEAVFGRFGRVYSVKIMWPRSEEERARGRNTGFVSF 245
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: A0A087UBV6_STEMI (U2 snRNP-associated SURP motif-containing protein (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087UBV6_STEMI)

HSP 1 Score: 61.6 bits (148), Expect = 3.980e-9
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   22 VESLIQSAGAAPAPTIEAYKAADGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            VE+ I+ A     P+  +Y   D    +TNL +  L    TEQ L  VFGRFG + SVK+M PR+DEERA+G   G+VAF
Sbjct:  175 VETQIRLADDYRYPSYGSYDTGD--PSTTNLYLGNLNPKMTEQQLCEVFGRFGPLASVKIMWPRSDEERARGRNCGFVAF 252
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: A0A482XPZ8_LAOST (Uncharacterized protein n=2 Tax=Delphacidae TaxID=33362 RepID=A0A482XPZ8_LAOST)

HSP 1 Score: 61.6 bits (148), Expect = 3.980e-9
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 GAIGGTAVESLIQSAGAAPAPTIEAYKAADGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            GA+ G+  +  I  AG+A    I ++   D    +TNL +  L    TEQ L  VFG++G + S+K+M PR+DEE+A+G   G+VAF
Sbjct:  159 GAVKGSPDDGQIVKAGSAIEDKIGSFDCGDPT--TTNLYLGNLNPKITEQQLMEVFGKYGPLASIKIMWPRSDEEKARGRNCGFVAF 243
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: UPI00077FB5BB (U2 snRNP-associated SURP motif-containing protein n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FB5BB)

HSP 1 Score: 61.6 bits (148), Expect = 3.980e-9
Identity = 37/80 (46.25%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   22 VESLIQSAGAAPAPTIEAYKAADGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            VE+ I+ A     P+  +Y   D    +TNL +  L    TEQ L  VFGRFG + SVK+M PR+DEERA+G   G+VAF
Sbjct:  174 VETQIRLADDYRYPSYGSYDTGD--PSTTNLYLGNLNPKMTEQQLCEVFGRFGPLASVKIMWPRSDEERARGRNCGFVAF 251
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BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: A0A7R9H7B9_TIMPO (Hypothetical protein (Fragment) n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9H7B9_TIMPO)

HSP 1 Score: 59.7 bits (143), Expect = 6.540e-9
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   88 DGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            +G   +TNL +  L    TEQ L  VFGR+G + S+K+M PR+DEE+A+G   G+VAF
Sbjct:   43 NGDPTTTNLYLGNLNPKITEQQLMEVFGRYGPLASIKIMWPRSDEEKARGRNCGFVAF 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Match: A0A4S2M2L5_OPIFE (Uncharacterized protein n=3 Tax=Opisthorchiidae TaxID=6196 RepID=A0A4S2M2L5_OPIFE)

HSP 1 Score: 60.8 bits (146), Expect = 7.490e-9
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   88 DGVELSTNLQIDGLLLATTEQDLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF 261
            DG   +TNL +  L    TEQ L   FGR+G + SVK+M PRTDEER++G   G+VAF
Sbjct:  220 DGDRTTTNLFLGNLNPKMTEQQLCEAFGRYGPLASVKIMWPRTDEERSRGRNCGFVAF 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86184.20087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I2CPD2_NANGC1.440e-953.45U2-associated protein SR140 (Fragment) n=1 Tax=Nan... [more]
F0XVQ8_AURAN1.510e-945.07Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6L5D6C5_9INSE1.550e-947.14Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]
A0A7S4E426_9STRA1.550e-950.00Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
W7U2X6_9STRA1.570e-953.45U2 snrnp-associated splicing factor putative n=4 T... [more]
A0A087UBV6_STEMI3.980e-946.25U2 snRNP-associated SURP motif-containing protein ... [more]
A0A482XPZ8_LAOST3.980e-940.23Uncharacterized protein n=2 Tax=Delphacidae TaxID=... [more]
UPI00077FB5BB3.980e-946.25U2 snRNP-associated SURP motif-containing protein ... [more]
A0A7R9H7B9_TIMPO6.540e-948.28Hypothetical protein (Fragment) n=1 Tax=Timema pop... [more]
A0A4S2M2L5_OPIFE7.490e-951.72Uncharacterized protein n=3 Tax=Opisthorchiidae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86184contigM-pyrifera_M_contig86184:1..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog44056.XP_009032304.1
Preferred nameU2SURP
KEGG koko:K02878,ko:K12842
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005685,GO:0005686,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017069,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035613,GO:0035614,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U2 snRNP-associated SURP
EggNOG OGsKOG0151@1,KOG0151@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03041
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.4592292-CDS-M-pyrifera_M_contig86184:0..2611622816772.4592292-CDS-M-pyrifera_M_contig86184:0..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86184 1..261 -
1692278169.5866241-CDS-M-pyrifera_M_contig86184:0..2611692278169.5866241-CDS-M-pyrifera_M_contig86184:0..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86184 1..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86184.20087.1prot_M-pyrifera_M_contig86184.20087.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86184 1..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86184.20087.1

>prot_M-pyrifera_M_contig86184.20087.1 ID=prot_M-pyrifera_M_contig86184.20087.1|Name=mRNA_M-pyrifera_M_contig86184.20087.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
GAIGGTAVESLIQSAGAAPAPTIEAYKAADGVELSTNLQIDGLLLATTEQ
DLFNVFGRFGQVESVKVMVPRTDEERAKGTTRGYVAF
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mRNA from alignment at M-pyrifera_M_contig86184:1..261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86184.20087.1 ID=mRNA_M-pyrifera_M_contig86184.20087.1|Name=mRNA_M-pyrifera_M_contig86184.20087.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig86184:1..261- (Macrocystis pyrifera P11B4 male)
GGTGCTATTGGTGGGACTGCAGTAGAATCATTGATACAATCAGCTGGTGC
AGCACCAGCACCAACAATTGAAGCATATAAGGCTGCAGATGGTGTTGAAT
TGTCAACAAATTTACAAATCGATGGCTTATTGCTTGCTACAACAGAGCAA
GATCTTTTCAATGTCTTTGGACGGTTTGGTCAAGTTGAGAGTGTGAAGGT
AATGGTTCCACGTACCGACGAAGAGCGTGCGAAAGGGACAACAAGAGGTT
ATGTCGCATTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86184:1..261-

>mRNA_M-pyrifera_M_contig86184.20087.1 ID=mRNA_M-pyrifera_M_contig86184.20087.1|Name=mRNA_M-pyrifera_M_contig86184.20087.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig86184:1..261- (Macrocystis pyrifera P11B4 male)
GGTGCTATTGGTGGGACTGCAGTAGAATCATTGATACAATCAGCTGGTGC
AGCACCAGCACCAACAATTGAAGCATATAAGGCTGCAGATGGTGTTGAAT
TGTCAACAAATTTACAAATCGATGGCTTATTGCTTGCTACAACAGAGCAA
GATCTTTTCAATGTCTTTGGACGGTTTGGTCAAGTTGAGAGTGTGAAGGT
AATGGTTCCACGTACCGACGAAGAGCGTGCGAAAGGGACAACAAGAGGTT
ATGTCGCATTTGGTGCTATTGGTGGGACTGCAGTAGAATCATTGATACAA
TCAGCTGGTGCAGCACCAGCACCAACAATTGAAGCATATAAGGCTGCAGA
TGGTGTTGAATTGTCAACAAATTTACAAATCGATGGCTTATTGCTTGCTA
CAACAGAGCAAGATCTTTTCAATGTCTTTGGACGGTTTGGTCAAGTTGAG
AGTGTGAAGGTAATGGTTCCACGTACCGACGAAGAGCGTGCGAAAGGGAC
AACAAGAGGTTATGTCGCATTT
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