mRNA_M-pyrifera_M_contig86173.20085.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86173.20085.1
Unique NamemRNA_M-pyrifera_M_contig86173.20085.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A6I6A950_9PLAN (RNA polymerase sigma factor n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A950_9PLAN)

HSP 1 Score: 531 bits (1367), Expect = 8.730e-188
Identity = 278/283 (98.23%), Postives = 282/283 (99.65%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGD+LTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRR++RTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSY IQ+AISAVH
Sbjct:   23 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDSLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRKARTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYAIQAAISAVH 305
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A812PB54_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PB54_SYMMI)

HSP 1 Score: 533 bits (1374), Expect = 1.010e-184
Identity = 280/283 (98.94%), Postives = 282/283 (99.65%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGD+LTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSY IQ+AISAVH
Sbjct:  306 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDSLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYAIQAAISAVH 588
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A518A2Y3_9PLAN (Putative ECF RNA polymerase sigma factor SigI n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A2Y3_9PLAN)

HSP 1 Score: 487 bits (1254), Expect = 1.300e-170
Identity = 250/283 (88.34%), Postives = 268/283 (94.70%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFATL+RLLGDFDLAEEA+H+AF AAV QW+ETGIPDQPRAWLVSTGRFKAIDS+RR ARF+EAQQEV +RLE VA QNADRS+QDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDA IPYVIP R ELPERL+AVLTVVYLVFNEGY+ASSGD+LTRRDLSEEAIRLGRLL ELLDD EV GLLALMLLHESRRE+RTT +GDLILLEDQDR LWD+EKIREG ALV++AIASGEVGSYT+Q+AISAVH
Sbjct:   23 RVFATLVRLLGDFDLAEEALHEAFAAAVAQWQETGIPDQPRAWLVSTGRFKAIDSIRRHARFNEAQQEVAERLERVAVQNADRSDQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDAGIPYVIPNRDELPERLEAVLTVVYLVFNEGYSASSGDSLTRRDLSEEAIRLGRLLGELLDDAEVTGLLALMLLHESRREARTTVDGDLILLEDQDRRLWDQEKIREGTALVQQAIASGEVGSYTLQAAISAVH 305
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A2E2CDL5_9PLAN (RNA polymerase subunit sigma-24 n=12 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CDL5_9PLAN)

HSP 1 Score: 460 bits (1183), Expect = 8.110e-160
Identity = 234/283 (82.69%), Postives = 261/283 (92.23%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFATLIRL+GDFDLAEEAMH+AF AAV QW   GIP  PR+WLVSTGRFKAID +RRR RFDEAQ EV QRLE +A  NAD+S+ +VEDDRLRLIFTCCHPAIAPQVQ+PLTLREVCGLTTEEIASAFLTSP+TMAQRIVRGK+KIRDA IPYV+P+R++LPERLDAVLTVVYLVFNEGY+ASSGD+LTR+DLSEEAIRLGRLL  LLDD EV GLLALML+HESRRE+R+TA GDLILLEDQDRSLWD++KIREG ALVE+AIASGEVGSYTIQ+AI++VH
Sbjct:   23 RVFATLIRLIGDFDLAEEAMHEAFAAAVEQWHRDGIPANPRSWLVSTGRFKAIDHIRRRVRFDEAQLEVAQRLESIAGLNADKSDSEVEDDRLRLIFTCCHPAIAPQVQIPLTLREVCGLTTEEIASAFLTSPATMAQRIVRGKSKIRDAGIPYVVPDRADLPERLDAVLTVVYLVFNEGYSASSGDSLTRKDLSEEAIRLGRLLLGLLDDPEVKGLLALMLIHESRREARSTANGDLILLEDQDRSLWDQDKIREGTALVEQAIASGEVGSYTIQAAIASVH 305
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A517RC64_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RC64_9PLAN)

HSP 1 Score: 441 bits (1134), Expect = 2.260e-152
Identity = 222/283 (78.45%), Postives = 256/283 (90.46%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RV+ATL+RLLGDFDLAEEA+H+AFTAA+ QWE  GIP  P +WLVSTGRFKAID++RRR R+D++Q+E++ RLEG+A  NAD+ + +VEDDRLRLIFTCCHPAIAP +QV LTLREVCGLTTEEIASAFLTSPSTMAQRIVRGK+KIR+A IPYV+P   +LPERLDAVLTV+YLVFNEGY+ASSGDTLTR DLSEEAIRL RLL ELL D E +GLLALMLLHESRRE+R T++G+LILLEDQDR LWDR+KIREGI+LVERAI SGEVGSYTIQ+AI+AVH
Sbjct:   23 RVYATLVRLLGDFDLAEEALHEAFTAAMEQWERDGIPANPVSWLVSTGRFKAIDTIRRRTRYDQSQEELITRLEGIAELNADKLDTEVEDDRLRLIFTCCHPAIAPNIQVALTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKSKIREAGIPYVVPTHVDLPERLDAVLTVIYLVFNEGYSASSGDTLTRGDLSEEAIRLARLLIELLPDPEAIGLLALMLLHESRREARATSDGELILLEDQDRRLWDRDKIREGISLVERAIGSGEVGSYTIQAAIAAVH 305
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A518I8R9_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I8R9_9PLAN)

HSP 1 Score: 438 bits (1127), Expect = 2.710e-151
Identity = 220/283 (77.74%), Postives = 256/283 (90.46%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFA+L+RLLGDFDLAEEA+H+AFTAAV QW+  GIPD P +WLVS GRFKAID++RRR R+D +Q+E+  RLEG+A  NA++S+ +VEDDRLRLIFTCCHPAIA Q+QVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIR+A IPYVIP R++LPERLDAVLTV+YLVFNEGY+ASSGD+LTR+DLSEEAIRLGRLL ELL D E +GLLALMLL ESRRE+R T+ G+LILLEDQDR LWD+ KIREGI+LVERAIA+GEVG YT+Q+AI++ H
Sbjct:   23 RVFASLVRLLGDFDLAEEALHEAFTAAVEQWQRDGIPDNPVSWLVSAGRFKAIDTIRRRTRYDRSQEELTTRLEGIAEANAEKSDTEVEDDRLRLIFTCCHPAIAAQIQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIREAGIPYVIPTRADLPERLDAVLTVIYLVFNEGYSASSGDSLTRQDLSEEAIRLGRLLVELLPDAEALGLLALMLLQESRREARATSMGELILLEDQDRRLWDQAKIREGISLVERAIATGEVGGYTVQAAIASEH 305
[Close]
BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A2E0SH57_9PLAN (RNA polymerase subunit sigma-24 n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E0SH57_9PLAN)

HSP 1 Score: 409 bits (1050), Expect = 1.020e-139
Identity = 209/283 (73.85%), Postives = 240/283 (84.81%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RV ATLIRLLGDFDLAEEA+ +AFTAA  QW+  GIPD PRAWLVSTGRFKA+D +RRRA F + Q  +  R+E +A  NAD +E+ ++DD+LRLIFTCCHPAI P+VQVPLTLREVCGLTTEEIASAFLT+P+ MAQRIVRGKAKIRDA IPYVIP  ++LPER+DAVL V+YLVFNEGY+AS+G T TR DLS EAIRLGRL+ ELL D EVMGLLALMLLHESRR +R + EGD+ILLEDQDRS W+RE IREG  LV+RA A+G VG YTIQ+AISAVH
Sbjct:   20 RVLATLIRLLGDFDLAEEALQEAFTAAAEQWQHEGIPDNPRAWLVSTGRFKAVDLVRRRASFQKMQPAIAARVEAIADHNADLAERQIKDDQLRLIFTCCHPAIDPKVQVPLTLREVCGLTTEEIASAFLTAPAAMAQRIVRGKAKIRDAGIPYVIPSEADLPERIDAVLAVIYLVFNEGYSASTGTTHTRPDLSNEAIRLGRLMLELLPDPEVMGLLALMLLHESRRAARLSPEGDIILLEDQDRSRWNRELIREGQQLVQRAFAAGNVGPYTIQAAISAVH 302
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: UPI00141DA3C8 (RNA polymerase sigma factor n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00141DA3C8)

HSP 1 Score: 404 bits (1039), Expect = 4.440e-138
Identity = 205/283 (72.44%), Postives = 240/283 (84.81%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFATL+RLL DFDLAEEAMH+AF +AV QW+  GIP  PRAWL+STGRFKAID++RR +RF E Q+EV+ RLE ++  N  R EQD+EDDRLRLIFTCCHPAI P+VQVPLTLREVCGLTTEEIA AFL  P+TMAQRIVRGKAKIRDA IP+VIP  ++LP+RLDAVL V+YL FNEGY+AS+G +LTR DLS EAIRL RL++ELL D EV+GLLALMLLHESRR +R + +GD+ILLEDQDRS WD+E I EG  LVER++ SG +G YTIQ+AISAVH
Sbjct:   18 RVFATLVRLLNDFDLAEEAMHEAFASAVDQWQRDGIPANPRAWLISTGRFKAIDAIRRHSRFAERQREVLARLEDISDANRQREEQDIEDDRLRLIFTCCHPAIDPKVQVPLTLREVCGLTTEEIAHAFLVPPATMAQRIVRGKAKIRDAGIPFVIPSHADLPDRLDAVLAVIYLFFNEGYSASAGASLTRSDLSSEAIRLARLISELLPDPEVIGLLALMLLHESRRTARMSDQGDIILLEDQDRSQWDQELIAEGQQLVERSLRSGRIGVYTIQAAISAVH 300
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A518IYH0_9BACT (Putative ECF RNA polymerase sigma factor SigI n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518IYH0_9BACT)

HSP 1 Score: 405 bits (1040), Expect = 6.110e-138
Identity = 204/282 (72.34%), Postives = 243/282 (86.17%), Query Frame = 1 
Query:    4 VFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            VFATL+RL+GDFDLAEEA+H+AF AA+ +W++ GIP  PR+WLVS+GRFKAID +RRRARF  A  E+ QR+E +A  NA  SE++++DDRLRLIFTCCHPAI P+VQVPLTLREVCGLTTEEIASAFL SPSTMAQRIVRGKAKIRDA IP+V+P  +ELPERLDAVL+VVYLVFNEGY+AS+G++LTR DLS+EAIRL RL+ ELL D E MGLLA+MLLHESRR++R T +GDL+LLEDQDRSLWDR+ I EG   V+R++ S  VG Y IQ+AISAVH
Sbjct:   39 VFATLVRLIGDFDLAEEALHEAFIAALEKWQQQGIPADPRSWLVSSGRFKAIDVIRRRARFHRAADELAQRIEEIAAANASVSEREIQDDRLRLIFTCCHPAIDPKVQVPLTLREVCGLTTEEIASAFLASPSTMAQRIVRGKAKIRDAKIPFVVPSLTELPERLDAVLSVVYLVFNEGYSASTGESLTRPDLSQEAIRLSRLIVELLPDPEAMGLLAMMLLHESRRQARLTPDGDLVLLEDQDRSLWDRDLIDEGKLWVQRSLESRRVGGYAIQAAISAVH 320
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BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Match: A0A517W0L0_9PLAN (ECF RNA polymerase sigma factor SigE n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W0L0_9PLAN)

HSP 1 Score: 403 bits (1035), Expect = 1.920e-137
Identity = 204/283 (72.08%), Postives = 247/283 (87.28%), Query Frame = 1 
Query:    1 RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRFKAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCCHPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDANIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIRLGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWDREKIREGIALVERAIASGEVGSYTIQSAISAVH 849
            RVFATLIRLLGDFDLAEEAMH+AFTAAV QW+  GIP  PRAWLVSTGRFKAIDS+RRR+RFD + +E+ +RLE +A   A+++ Q+VEDDRLRLIFTCCHP+++P++QV LTLREVCGL TEEIASAFL +P T+AQRIVR KAKIRDA IPY +P  +ELP RLDAVL+V+YLVFNEGY+ASSG++L R DLSEEAIRLGRLL +LL D+EVMGLLALMLL ESRR++R T++GD+ILLEDQDRSLW+R++I EG  LV R++AS + G YTIQ+AI++VH
Sbjct:   23 RVFATLIRLLGDFDLAEEAMHEAFTAAVEQWQCDGIPRNPRAWLVSTGRFKAIDSVRRRSRFDASLEELARRLEEIADDKAEKANQEVEDDRLRLIFTCCHPSLSPELQVALTLREVCGLKTEEIASAFLITPPTLAQRIVRAKAKIRDAGIPYEVPSLAELPTRLDAVLSVIYLVFNEGYSASSGESLIRIDLSEEAIRLGRLLLDLLPDSEVMGLLALMLLQESRRDARATSDGDVILLEDQDRSLWNRQQISEGTTLVNRSVASRDYGIYTIQAAIASVH 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86173.20085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A950_9PLAN8.730e-18898.23RNA polymerase sigma factor n=6 Tax=Gimesia TaxID=... [more]
A0A812PB54_SYMMI1.010e-18498.94Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A518A2Y3_9PLAN1.300e-17088.34Putative ECF RNA polymerase sigma factor SigI n=3 ... [more]
A0A2E2CDL5_9PLAN8.110e-16082.69RNA polymerase subunit sigma-24 n=12 Tax=Planctomy... [more]
A0A517RC64_9PLAN2.260e-15278.45RNA polymerase sigma factor n=1 Tax=Gimesia alba T... [more]
A0A518I8R9_9PLAN2.710e-15177.74RNA polymerase sigma factor n=1 Tax=Gimesia fumaro... [more]
A0A2E0SH57_9PLAN1.020e-13973.85RNA polymerase subunit sigma-24 n=1 Tax=Planctomyc... [more]
UPI00141DA3C84.440e-13872.44RNA polymerase sigma factor n=1 Tax=Rubinisphaera ... [more]
A0A518IYH0_9BACT6.110e-13872.34Putative ECF RNA polymerase sigma factor SigI n=4 ... [more]
A0A517W0L0_9PLAN1.920e-13772.08ECF RNA polymerase sigma factor SigE n=2 Tax=Gimes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86173contigM-pyrifera_M_contig86173:2..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score454.1
Seed ortholog evalue4.7e-125
Seed eggNOG ortholog344747.PM8797T_16580
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM RNA polymerase sigma factor, sigma-70 family
EggNOG OGs2IXZ5@203682,COG4941@1,COG4941@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size849
Cds size849
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.3915966-CDS-M-pyrifera_M_contig86173:1..8501622816772.3915966-CDS-M-pyrifera_M_contig86173:1..850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86173 2..850 -
1692278169.5459228-CDS-M-pyrifera_M_contig86173:1..8501692278169.5459228-CDS-M-pyrifera_M_contig86173:1..850Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86173 2..850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86173.20085.1prot_M-pyrifera_M_contig86173.20085.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86173 2..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86173.20085.1

>prot_M-pyrifera_M_contig86173.20085.1 ID=prot_M-pyrifera_M_contig86173.20085.1|Name=mRNA_M-pyrifera_M_contig86173.20085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp
RVFATLIRLLGDFDLAEEAMHDAFTAAVVQWEETGIPDQPRAWLVSTGRF
KAIDSLRRRARFDEAQQEVVQRLEGVATQNADRSEQDVEDDRLRLIFTCC
HPAIAPQVQVPLTLREVCGLTTEEIASAFLTSPSTMAQRIVRGKAKIRDA
NIPYVIPERSELPERLDAVLTVVYLVFNEGYAASSGDTLTRRDLSEEAIR
LGRLLAELLDDTEVMGLLALMLLHESRRESRTTAEGDLILLEDQDRSLWD
REKIREGIALVERAIASGEVGSYTIQSAISAVH
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mRNA from alignment at M-pyrifera_M_contig86173:2..850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86173.20085.1 ID=mRNA_M-pyrifera_M_contig86173.20085.1|Name=mRNA_M-pyrifera_M_contig86173.20085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=849bp|location=Sequence derived from alignment at M-pyrifera_M_contig86173:2..850- (Macrocystis pyrifera P11B4 male)
CGGGTGTTCGCGACACTGATCCGACTGCTGGGGGACTTTGATCTGGCTGA
AGAAGCCATGCACGATGCCTTTACCGCGGCGGTGGTGCAATGGGAGGAGA
CGGGTATTCCCGATCAACCCCGGGCCTGGCTGGTTTCCACGGGGCGTTTC
AAAGCCATCGACAGTCTCCGCCGTCGGGCCCGTTTCGATGAAGCACAACA
GGAAGTCGTACAACGACTGGAAGGCGTTGCCACACAGAATGCCGACCGCT
CTGAGCAGGATGTGGAAGACGACCGGCTGCGGCTGATCTTCACCTGCTGT
CACCCGGCGATTGCCCCCCAGGTGCAGGTGCCGCTGACACTCCGTGAGGT
CTGTGGTCTGACGACGGAAGAGATTGCGAGTGCGTTTCTGACATCTCCCT
CCACGATGGCGCAGCGGATCGTCCGCGGTAAAGCAAAGATCCGGGACGCA
AATATTCCGTATGTGATTCCGGAACGATCCGAGTTGCCCGAACGACTGGA
TGCTGTGCTGACTGTAGTCTACCTGGTGTTTAACGAAGGCTATGCAGCTT
CCTCCGGGGATACACTGACCAGGCGGGATCTGTCGGAAGAGGCGATCCGG
CTGGGCCGACTGCTCGCGGAACTGCTGGACGATACCGAGGTGATGGGTCT
CCTGGCTCTGATGCTGCTGCACGAATCACGGCGGGAGTCCCGGACAACGG
CAGAGGGAGATTTGATTCTGCTGGAAGATCAGGATCGAAGTCTCTGGGAT
CGGGAGAAAATACGTGAGGGAATCGCACTGGTCGAACGCGCAATCGCCTC
GGGGGAGGTGGGGAGCTACACGATTCAGTCAGCGATCTCAGCCGTACAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86173:2..850-

>mRNA_M-pyrifera_M_contig86173.20085.1 ID=mRNA_M-pyrifera_M_contig86173.20085.1|Name=mRNA_M-pyrifera_M_contig86173.20085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig86173:2..850- (Macrocystis pyrifera P11B4 male)
CGGGTGTTCGCGACACTGATCCGACTGCTGGGGGACTTTGATCTGGCTGA
AGAAGCCATGCACGATGCCTTTACCGCGGCGGTGGTGCAATGGGAGGAGA
CGGGTATTCCCGATCAACCCCGGGCCTGGCTGGTTTCCACGGGGCGTTTC
AAAGCCATCGACAGTCTCCGCCGTCGGGCCCGTTTCGATGAAGCACAACA
GGAAGTCGTACAACGACTGGAAGGCGTTGCCACACAGAATGCCGACCGCT
CTGAGCAGGATGTGGAAGACGACCGGCTGCGGCTGATCTTCACCTGCTGT
CACCCGGCGATTGCCCCCCAGGTGCAGGTGCCGCTGACACTCCGTGAGGT
CTGTGGTCTGACGACGGAAGAGATTGCGAGTGCGTTTCTGACATCTCCCT
CCACGATGGCGCAGCGGATCGTCCGCGGTAAAGCAAAGATCCGGGACGCA
AATATTCCGTATGTGATTCCGGAACGATCCGAGTTGCCCGAACGACTGGA
TGCTGTGCTGACTGTAGTCTACCTGGTGTTTAACGAAGGCTATGCAGCTT
CCTCCGGGGATACACTGACCAGGCGGGATCTGTCGGAAGAGGCGATCCGG
CTGGGCCGACTGCTCGCGGAACTGCTGGACGATACCGAGGTGATGGGTCT
CCTGGCTCTGATGCTGCTGCACGAATCACGGCGGGAGTCCCGGACAACGG
CAGAGGGAGATTTGATTCTGCTGGAAGATCAGGATCGAAGTCTCTGGGAT
CGGGAGAAAATACGTGAGGGAATCGCACTGGTCGAACGCGCAATCGCCTC
GGGGGAGGTGGGGAGCTACACGATTCAGTCAGCGATCTCAGCCGTACACC
GGGTGTTCGCGACACTGATCCGACTGCTGGGGGACTTTGATCTGGCTGAA
GAAGCCATGCACGATGCCTTTACCGCGGCGGTGGTGCAATGGGAGGAGAC
GGGTATTCCCGATCAACCCCGGGCCTGGCTGGTTTCCACGGGGCGTTTCA
AAGCCATCGACAGTCTCCGCCGTCGGGCCCGTTTCGATGAAGCACAACAG
GAAGTCGTACAACGACTGGAAGGCGTTGCCACACAGAATGCCGACCGCTC
TGAGCAGGATGTGGAAGACGACCGGCTGCGGCTGATCTTCACCTGCTGTC
ACCCGGCGATTGCCCCCCAGGTGCAGGTGCCGCTGACACTCCGTGAGGTC
TGTGGTCTGACGACGGAAGAGATTGCGAGTGCGTTTCTGACATCTCCCTC
CACGATGGCGCAGCGGATCGTCCGCGGTAAAGCAAAGATCCGGGACGCAA
ATATTCCGTATGTGATTCCGGAACGATCCGAGTTGCCCGAACGACTGGAT
GCTGTGCTGACTGTAGTCTACCTGGTGTTTAACGAAGGCTATGCAGCTTC
CTCCGGGGATACACTGACCAGGCGGGATCTGTCGGAAGAGGCGATCCGGC
TGGGCCGACTGCTCGCGGAACTGCTGGACGATACCGAGGTGATGGGTCTC
CTGGCTCTGATGCTGCTGCACGAATCACGGCGGGAGTCCCGGACAACGGC
AGAGGGAGATTTGATTCTGCTGGAAGATCAGGATCGAAGTCTCTGGGATC
GGGAGAAAATACGTGAGGGAATCGCACTGGTCGAACGCGCAATCGCCTCG
GGGGAGGTGGGGAGCTACACGATTCAGTCAGCGATCTCAGCCGTACAC
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