mRNA_M-pyrifera_M_contig8617.20082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8617.20082.1
Unique NamemRNA_M-pyrifera_M_contig8617.20082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8617.20082.1 vs. uniprot
Match: D7G428_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G428_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.570e-49
Identity = 104/311 (33.44%), Postives = 149/311 (47.91%), Query Frame = 1 
Query:    1 GALPAFPLSTKEVKIRMGYYTEGGKYLGGVPKYDE-KHGTYQCSDLNY------ELGTYNTASGGNATVCMSWATANPGQNNTSEGEQAEATTTNAEYCAEWTCGVQDAGNTLTCPGGVTPCSLDYEPVETTAICTCGTAEESGKFCAAWTCRGWDANGVEESEEFQCVRDSPSGEYCDGWTSVLERPKEIQVSTCDCIGQWNGDGVCTYWECEERSMPVCSHANDPHMSWCNIGIAVGLWGLLGSIGAF-----FVASGL-------MRLVEDSCVNVFVLGTFLMVVFSVPVVIWGGQDGAVYVGIMWG 876
            G  P +P++  ++K+  GYYTE GKYLGG+PK D      Y+C+   Y      +  T +T     AT CM W           +G     +  N  YC+ WTC            G     S + + V    +C C     SG +C +W+C+  D++G EE EE+ C R+             +    E++V TC+C+  W+GD +C+YWECEE  +  C+        WC++G+++GL G+ G  GA      F + G        MR V  + V     G    +V+SV VVIWGG DG VYVGIMWG
Sbjct:   51 GVYPDYPMTFADMKVLAGYYTEDGKYLGGIPKADPVSKEIYECAADTYFYPSGNDTVTDSTDGKDEATACMEWRADESAGGVFQKGTCECTSIDNENYCSAWTCNQVKEEEDCNSSGSNCVVSTNTDAV----LCQCDLDVPSGLYCDSWSCKQIDSDGREEFEEYHCQREXXXXXXXXXXNGNVTASDEVEVVTCECVATWSGDRLCSYWECEEIGLSSCNSTR----GWCDLGLSIGLAGVFGLAGALAAGFSFASFGCFERSTTGMRAVVCTGVG----GILWCMVWSVGVVIWGGLDGVVYVGIMWG 349
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BLAST of mRNA_M-pyrifera_M_contig8617.20082.1 vs. uniprot
Match: D7FR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR75_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.300e-42
Identity = 94/301 (31.23%), Postives = 143/301 (47.51%), Query Frame = 1 
Query:    7 LPAFPLSTKEVKIRMGYYTEGGKYLGGVPK-YDEKHGTYQCSDLNYELGTYNTASGGNATVCMSWATANPGQNNTSEGEQAEATTTNAEYCAEWTCGVQDAGNTLTCPGGVTPCSLDYEPVETTAICTCG-TAEESGKFCAAWTCRGWDANGVEESEEFQCVRDSPSGEYCDGWTSVLERPKEIQVSTCDCIGQWNGDGVCTYWECEERSMPVCSHANDPHMSWCNIGIAVGLWGLLGSIGAFFVASGLMRL-------VEDSCVNVF--VLGTFLMVVFSVPVVIWGGQDGAVYVGIMWG 876
            LP FP++  ++++  GYY+  GKYLGG+PK +      Y C+D  Y     NTAS  NAT C  W+              A+ +        +  C                  + DY       +C C  T    G      +C+   + G  E E+++C R SPSG YC+ W   +    E ++ +C+C+  W+GD VC++WECEE  +  CS A     SWC++G+++G+ G +G +G   +  G+  +         D+   +    LGT   + +S  VVIWGG+ GA YVGIMWG
Sbjct:   55 LPDFPMTLADMEVLAGYYSADGKYLGGMPKAHTLSREIYDCTDFQYSEPN-NTAS--NATYCTGWS--------------ADESYGGGFQLGDCECKFSXXXXXXXXXXXXXQENSDY------TLCQCDDTGAAEGLXXXXXSCKQICSGGRAEFEDYRCQRPSPSGHYCEAWNGNVTASDEFEIVSCECLANWHGDQVCSFWECEELGLSTCSSAG---ASWCDLGVSIGVGGGIGLLGVLVICYGIGLVGRIDSEGQSDTTAGLMGIALGTVWCLSWSSGVVIWGGEAGATYVGIMWG 329
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8617.20082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G428_ECTSI5.570e-4933.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FR75_ECTSI4.300e-4231.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8617contigM-pyrifera_M_contig8617:5905..7690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size891
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816772.279272-CDS-M-pyrifera_M_contig8617:5904..61501622816772.279272-CDS-M-pyrifera_M_contig8617:5904..6150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8617 5905..6150 +
1692278169.4815097-CDS-M-pyrifera_M_contig8617:5904..61501692278169.4815097-CDS-M-pyrifera_M_contig8617:5904..6150Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8617 5905..6150 +
1622816772.2911918-CDS-M-pyrifera_M_contig8617:7045..76901622816772.2911918-CDS-M-pyrifera_M_contig8617:7045..7690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8617 7046..7690 +
1692278169.493432-CDS-M-pyrifera_M_contig8617:7045..76901692278169.493432-CDS-M-pyrifera_M_contig8617:7045..7690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8617 7046..7690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8617.20082.1prot_M-pyrifera_M_contig8617.20082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8617 5905..7690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8617.20082.1

>prot_M-pyrifera_M_contig8617.20082.1 ID=prot_M-pyrifera_M_contig8617.20082.1|Name=mRNA_M-pyrifera_M_contig8617.20082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=297bp
GALPAFPLSTKEVKIRMGYYTEGGKYLGGVPKYDEKHGTYQCSDLNYELG
TYNTASGGNATVCMSWATANPGQNNTSEGEQAEATTTNAEYCAEWTCGVQ
DAGNTLTCPGGVTPCSLDYEPVETTAICTCGTAEESGKFCAAWTCRGWDA
NGVEESEEFQCVRDSPSGEYCDGWTSVLERPKEIQVSTCDCIGQWNGDGV
CTYWECEERSMPVCSHANDPHMSWCNIGIAVGLWGLLGSIGAFFVASGLM
RLVEDSCVNVFVLGTFLMVVFSVPVVIWGGQDGAVYVGIMWGAIILV
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mRNA from alignment at M-pyrifera_M_contig8617:5905..7690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8617.20082.1 ID=mRNA_M-pyrifera_M_contig8617.20082.1|Name=mRNA_M-pyrifera_M_contig8617.20082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1786bp|location=Sequence derived from alignment at M-pyrifera_M_contig8617:5905..7690+ (Macrocystis pyrifera P11B4 male)
GGTGCGTTGCCCGCCTTCCCGCTCAGCACCAAGGAGGTCAAGATCCGCAT
GGGATACTACACCGAGGGGGGTAAGTACCTTGGCGGGGTGCCCAAGTACG
ATGAGAAGCACGGCACCTACCAGTGCTCGGACCTGAATTACGAGCTGGGC
ACGTACAACACCGCGTCTGGGGGGAACGCGACGGTCTGCATGAGCTGGGC
CACGGCAAACCCGGGCCAGAACAACACCTCGGAGGGGGAACAGGCCGTGG
ATAGGTAGGTGGTCGGACAGCCGTGCTGCTACAGCAGAGGCACGGGGTTG
CGCTGTTGGCCCCCAAATATTTCCCACTGGCGGACGGACCTCCTCATACC
TTAGTAGCTACCCAGTATTTTGGGGTTGTGCATGCCACCGTAGGGTAGGG
GGGCACCTGCGCATTTTGCCGGGGGCTTTCCTTCATCGAGGAGCTGTATC
GGTCGCGCCCAAAGGCTGGCTGTCTCAAAACATGCGCACTTAACCCAATT
AACTGTCCCAGAGCCTAGGCATCTGTGGCCGAAAACGACTGGAAAAAATC
GAACAAATCTCGGGTAGTCTCTCGGATGAGAGGACCCCTCACTCAAACCC
AGCAGGGACACAAAACGTGCTGCTCCCTATCGCAGCAGGCGCTTTGGATC
CGATGTATGTTTCACCAGTAGATGTGGGATGCCTATTGTTTCCCGTGGGA
TAATGGATCGGACTCACTGACCGCAGCATACCACCGTACGTCGTTCAATG
ACGGCGGTTGGGTGAGGTGGTGGTGTAGGTAAAAAGGTCTAGGAACTGAA
GGAAAAAGGTCTAGGAACTGAAGGAGGCTCAGAAACAGTACAGATAGGTG
CCAACCCTAACCCTACCCTACCGTACGTAGCACGCCTCGTCAGGAATACC
AAAAACGTAAGTAAACAAAATGAGAGTGAAAAACTAACAGGAGGCCTGTG
ATGACTGGGCTAAATATTGTACATAATTATGCAAACGGCAATTTCAGGCT
ACTTTACTTCATGCTTTCACCGTGGTTTTGGAGGAGACCGCACCCACCTT
TTCTCTAGAGCTAAAACCCTGCGGAGTGTCAGGGGGGGTGTCATCGTAAG
TTGCTCCCGTGTGCTCTCGGCCCGACAGGTGTCTGTGTCAGGAGGCCACC
ACCACCAACGCCGAGTACTGCGCGGAGTGGACCTGCGGAGTGCAGGACGC
GGGCAACACCCTCACTTGCCCGGGGGGCGTCACACCCTGCTCCCTTGACT
ACGAACCGGTGGAGACCACTGCCATATGCACCTGCGGGACGGCGGAAGAG
TCCGGGAAGTTTTGCGCGGCCTGGACGTGTCGAGGGTGGGACGCCAACGG
CGTTGAAGAATCCGAGGAGTTCCAATGCGTGAGGGATTCTCCTTCCGGGG
AGTACTGTGACGGCTGGACGAGCGTGCTCGAGAGGCCTAAGGAGATCCAG
GTGTCCACCTGCGACTGTATCGGGCAGTGGAACGGCGACGGTGTATGCAC
GTACTGGGAGTGCGAAGAGCGATCCATGCCAGTCTGCTCCCATGCAAACG
ACCCGCACATGAGTTGGTGCAATATCGGCATCGCCGTGGGGCTCTGGGGC
CTGCTGGGGTCTATAGGGGCGTTTTTCGTGGCGTCGGGACTCATGCGTCT
CGTGGAAGACTCGTGCGTCAACGTGTTTGTTCTCGGTACCTTCTTGATGG
TTGTGTTTTCCGTGCCTGTCGTGATCTGGGGCGGTCAGGATGGCGCCGTG
TACGTCGGTATCATGTGGGGGGCTATCATTCTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8617:5905..7690+

>mRNA_M-pyrifera_M_contig8617.20082.1 ID=mRNA_M-pyrifera_M_contig8617.20082.1|Name=mRNA_M-pyrifera_M_contig8617.20082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1782bp|location=Sequence derived from alignment at M-pyrifera_M_contig8617:5905..7690+ (Macrocystis pyrifera P11B4 male)
GGTGCGTTGCCCGCCTTCCCGCTCAGCACCAAGGAGGTCAAGATCCGCAT
GGGATACTACACCGAGGGGGGTAAGTACCTTGGCGGGGTGCCCAAGTACG
ATGAGAAGCACGGCACCTACCAGTGCTCGGACCTGAATTACGAGCTGGGC
ACGTACAACACCGCGTCTGGGGGGAACGCGACGGTCTGCATGAGCTGGGC
CACGGCAAACCCGGGCCAGAACAACACCTCGGAGGGGGAACAGGCCGGTG
CGTTGCCCGCCTTCCCGCTCAGCACCAAGGAGGTCAAGATCCGCATGGGA
TACTACACCGAGGGGGGTAAGTACCTTGGCGGGGTGCCCAAGTACGATGA
GAAGCACGGCACCTACCAGTGCTCGGACCTGAATTACGAGCTGGGCACGT
ACAACACCGCGTCTGGGGGGAACGCGACGGTCTGCATGAGCTGGGCCACG
GCAAACCCGGGCCAGAACAACACCTCGGAGGGGGAACAGGCCGAGGCCAC
CACCACCAACGCCGAGTACTGCGCGGAGTGGACCTGCGGAGTGCAGGACG
CGGGCAACACCCTCACTTGCCCGGGGGGCGTCACACCCTGCTCCCTTGAC
TACGAACCGGTGGAGACCACTGCCATATGCACCTGCGGGACGGCGGAAGA
GTCCGGGAAGTTTTGCGCGGCCTGGACGTGTCGAGGGTGGGACGCCAACG
GCGTTGAAGAATCCGAGGAGTTCCAATGCGTGAGGGATTCTCCTTCCGGG
GAGTACTGTGACGGCTGGACGAGCGTGCTCGAGAGGCCTAAGGAGATCCA
GGTGTCCACCTGCGACTGTATCGGGCAGTGGAACGGCGACGGTGTATGCA
CGTACTGGGAGTGCGAAGAGCGATCCATGCCAGTCTGCTCCCATGCAAAC
GACCCGCACATGAGTTGGTGCAATATCGGCATCGCCGTGGGGCTCTGGGG
CCTGCTGGGGTCTATAGGGGCGTTTTTCGTGGCGTCGGGACTCATGCGTC
TCGTGGAAGACTCGTGCGTCAACGTGTTTGTTCTCGGTACCTTCTTGATG
GTTGTGTTTTCCGTGCCTGTCGTGATCTGGGGCGGTCAGGATGGCGCCGT
GTACGTCGGTATCATGTGGGGGGCTATCATTCTCGTGGAGGCCACCACCA
CCAACGCCGAGTACTGCGCGGAGTGGACCTGCGGAGTGCAGGACGCGGGC
AACACCCTCACTTGCCCGGGGGGCGTCACACCCTGCTCCCTTGACTACGA
ACCGGTGGAGACCACTGCCATATGCACCTGCGGGACGGCGGAAGAGTCCG
GGAAGTTTTGCGCGGCCTGGACGTGTCGAGGGTGGGACGCCAACGGCGTT
GAAGAATCCGAGGAGTTCCAATGCGTGAGGGATTCTCCTTCCGGGGAGTA
CTGTGACGGCTGGACGAGCGTGCTCGAGAGGCCTAAGGAGATCCAGGTGT
CCACCTGCGACTGTATCGGGCAGTGGAACGGCGACGGTGTATGCACGTAC
TGGGAGTGCGAAGAGCGATCCATGCCAGTCTGCTCCCATGCAAACGACCC
GCACATGAGTTGGTGCAATATCGGCATCGCCGTGGGGCTCTGGGGCCTGC
TGGGGTCTATAGGGGCGTTTTTCGTGGCGTCGGGACTCATGCGTCTCGTG
GAAGACTCGTGCGTCAACGTGTTTGTTCTCGGTACCTTCTTGATGGTTGT
GTTTTCCGTGCCTGTCGTGATCTGGGGCGGTCAGGATGGCGCCGTGTACG
TCGGTATCATGTGGGGGGCTATCATTCTCGTG
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