prot_M-pyrifera_M_contig109560.2007.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig109560.2007.1
Unique Nameprot_M-pyrifera_M_contig109560.2007.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length111
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517V873_9PLAN (RNA polymerase sigma-54 factor n=23 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V873_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 8.030e-67
Identity = 106/110 (96.36%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLK+KEIIDGEDK+KPLSDDALVDAL++EGYNLARRTVTKYRKAMNIPSSRQRREY
Sbjct:  387 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKLKEIIDGEDKNKPLSDDALVDALSREGYNLARRTVTKYRKAMNIPSSRQRREY 496
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A7C2JZ28_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JZ28_9PLAN)

HSP 1 Score: 196 bits (498), Expect = 2.910e-62
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGT T  GE+VAW IIRLK+KEI+DGE+K  PLSDDALV+ LAK+GYNLARRTVTKYRKA+NIPSSRQRR Y
Sbjct:   67 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTTTETGEEVAWDIIRLKLKEIVDGENKDDPLSDDALVEELAKQGYNLARRTVTKYRKALNIPSSRQRRAY 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A2D6SYW2_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SYW2_9PLAN)

HSP 1 Score: 202 bits (513), Expect = 9.540e-61
Identity = 96/110 (87.27%), Postives = 106/110 (96.36%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVGVHVTTVSRAVDDKWIQTPRGL+PLKRFFGGGTKT++GEDVAWGIIR+K++EI+DGEDKS+PLSDDALV+ L K GY LARRTVTKYRKAM+IPSSRQRREY
Sbjct:  384 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLFPLKRFFGGGTKTAEGEDVAWGIIRMKLREIVDGEDKSRPLSDDALVEELGKAGYTLARRTVTKYRKAMDIPSSRQRREY 493
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517QXD0_9BACT (RNA polymerase sigma-54 factor n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517QXD0_9BACT)

HSP 1 Score: 195 bits (496), Expect = 4.800e-58
Identity = 93/110 (84.55%), Postives = 103/110 (93.64%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVGVHVTTVSRAVDDKW+QTPRGL+PLKRFFGGGT+TSDG++VAW IIR+K+KEI+D EDKS PLSDDALV+ L K GYNLARRTVTKYRK M+IPSSRQRREY
Sbjct:  404 MQQIADVVGVHVTTVSRAVDDKWVQTPRGLFPLKRFFGGGTQTSDGDEVAWDIIRMKLKEIVDNEDKSNPLSDDALVEELKKHGYNLARRTVTKYRKNMDIPSSRQRREY 513
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: UPI00199698B8 (RNA polymerase sigma-54 factor n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI00199698B8)

HSP 1 Score: 187 bits (475), Expect = 5.990e-58
Identity = 90/111 (81.08%), Postives = 101/111 (90.99%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGED-VAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVGVHVTTVSRAVDDKWIQTPRGL+PLKRFFGGGTKT DGED VAW ++R+K++E+ID EDK  PLSDDALV+ + K GYNLARRTVTKYRK +NIPSSRQRR+Y
Sbjct:  126 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLFPLKRFFGGGTKTDDGEDDVAWAVVRIKLQEVIDKEDKDDPLSDDALVEEMKKLGYNLARRTVTKYRKKLNIPSSRQRRQY 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A3B1DGB5_9ZZZZ (RNA polymerase sigma-54 factor RpoN n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DGB5_9ZZZZ)

HSP 1 Score: 194 bits (492), Expect = 1.010e-57
Identity = 92/110 (83.64%), Postives = 103/110 (93.64%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIAD+V VHVTTVSRAVDDKWIQTPRG++PLKRFFGGGTKT++GEDVAW IIR+K++EIID EDK KPLSD+ALV  LAK+GY LARRT+TKYRKAMNIPSSRQRREY
Sbjct:  374 MQQIADIVEVHVTTVSRAVDDKWIQTPRGIFPLKRFFGGGTKTTEGEDVAWDIIRIKLQEIIDAEDKDKPLSDEALVKELAKQGYKLARRTITKYRKAMNIPSSRQRREY 483
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517T718_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T718_9PLAN)

HSP 1 Score: 192 bits (489), Expect = 3.700e-57
Identity = 91/110 (82.73%), Postives = 103/110 (93.64%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVGVHVTTVSRAVDDKW+QTPRGL+PLKRFFGGGT+T+DG++VAW IIR+K+KE++D EDKS PLSDDALV+ L K GY+LARRTVTKYRK MNIPSSRQRREY
Sbjct:  387 MQQIADVVGVHVTTVSRAVDDKWMQTPRGLFPLKRFFGGGTQTADGDEVAWDIIRIKLKEVVDNEDKSHPLSDDALVEELKKHGYHLARRTVTKYRKNMNIPSSRQRREY 496
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A3L7S9J6_9BACT (RNA polymerase sigma-54 factor (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7S9J6_9BACT)

HSP 1 Score: 181 bits (458), Expect = 9.320e-57
Identity = 89/110 (80.91%), Postives = 97/110 (88.18%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQ+IADVV VHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGT T  GE+VAW IIR+K+KEI+D EDK+ PLSDDALV  LAK GY LARRTVTKYRK ++IPSSRQRR Y
Sbjct:   25 MQEIADVVKVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTVTESGEEVAWDIIRIKLKEIVDHEDKNDPLSDDALVVELAKFGYTLARRTVTKYRKGLDIPSSRQRRAY 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A518CHY5_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CHY5_9PLAN)

HSP 1 Score: 191 bits (484), Expect = 2.120e-56
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQQIADVVG HVTTVSRAVDDKWIQTPRGLYPLKRFFGGGT T+DGE+VAW  IR K+KE+IDGEDK  PLSDDALVDALAKEG  LARRTVTKYRK M IPSSR+RREY
Sbjct:  389 MQQIADVVGRHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTTTADGEEVAWENIRRKLKEVIDGEDKQSPLSDDALVDALAKEGLTLARRTVTKYRKKMGIPSSRERREY 498
[Close]
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A5C5X7L9_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X7L9_9PLAN)

HSP 1 Score: 190 bits (483), Expect = 2.630e-56
Identity = 92/110 (83.64%), Postives = 101/110 (91.82%), Query Frame = 0 
Query:    1 MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 110
            MQ +ADVVGVHVTTVSRAVDDK++ TPRG++PLKRFFGGGTKT+DGEDVAW  IRLK+KEI+DGEDKS PLSDDALV  LAK GY LARRTVTKYR+AMNIPSSRQRREY
Sbjct:  383 MQDVADVVGVHVTTVSRAVDDKYVATPRGIFPLKRFFGGGTKTADGEDVAWENIRLKLKEIVDGEDKSSPLSDDALVAELAKHGYQLARRTVTKYRQAMNIPSSRQRREY 492
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517V873_9PLAN8.030e-6796.36RNA polymerase sigma-54 factor n=23 Tax=Planctomyc... [more]
A0A7C2JZ28_9PLAN2.910e-6286.36RNA polymerase sigma-54 factor n=1 Tax=Schlesneria... [more]
A0A2D6SYW2_9PLAN9.540e-6187.27RNA polymerase sigma-54 factor n=1 Tax=Planctomyce... [more]
A0A517QXD0_9BACT4.800e-5884.55RNA polymerase sigma-54 factor n=1 Tax=Planctomyce... [more]
UPI00199698B85.990e-5881.08RNA polymerase sigma-54 factor n=1 Tax=Fuerstiella... [more]
A0A3B1DGB5_9ZZZZ1.010e-5783.64RNA polymerase sigma-54 factor RpoN n=1 Tax=hydrot... [more]
A0A517T718_9PLAN3.700e-5782.73RNA polymerase sigma-54 factor n=1 Tax=Calycomorph... [more]
A0A3L7S9J6_9BACT9.320e-5780.91RNA polymerase sigma-54 factor (Fragment) n=1 Tax=... [more]
A0A518CHY5_9PLAN2.120e-5685.45RNA polymerase sigma-54 factor n=1 Tax=Polystyrene... [more]
A0A5C5X7L9_9PLAN2.630e-5683.64RNA polymerase sigma-54 factor n=1 Tax=Thalassoglo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000394RNA polymerase sigma factor 54PRINTSPR00045SIGMA54FCTcoord: 26..37
score: 66.67
coord: 10..22
score: 46.15
coord: 84..102
score: 61.3
IPR000394RNA polymerase sigma factor 54PANTHERPTHR32248FAMILY NOT NAMEDcoord: 1..109
IPR000394RNA polymerase sigma factor 54PROSITEPS00718SIGMA54_2coord: 89..96
IPR007634RNA polymerase sigma factor 54, DNA-bindingPFAMPF04552Sigma54_DBDcoord: 1..108
e-value: 6.5E-41
score: 139.7
NoneNo IPR availableGENE3D1.10.10.60coord: 52..108
e-value: 4.9E-24
score: 85.8
NoneNo IPR availablePROSITEPS50044SIGMA54_3coord: 1..88
score: 24.303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109560contigM-pyrifera_M_contig109560:242..574 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109560.2007.1mRNA_M-pyrifera_M_contig109560.2007.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig109560 242..604 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig109560.2007.1 ID=prot_M-pyrifera_M_contig109560.2007.1|Name=mRNA_M-pyrifera_M_contig109560.2007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVA
WGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMN
IPSSRQRREY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000394RNA_pol_sigma_54
IPR007634RNA_pol_sigma_54_DNA-bd