prot_M-pyrifera_M_contig86117.20073.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig86117.20073.1
Unique Nameprot_M-pyrifera_M_contig86117.20073.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length123
Homology
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BLAST of mRNA_M-pyrifera_M_contig86117.20073.1 vs. uniprot
Match: A0A2N0DM69_9PSED (RING-type E3 ubiquitin transferase n=3 Tax=Pseudomonas TaxID=286 RepID=A0A2N0DM69_9PSED)

HSP 1 Score: 54.3 bits (129), Expect = 5.480e-6
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 0 
Query:    3 GLEVLVLSFNHLSHLPD-LSSLPSLRRLSASHNRLTSLSFPLEKVPGEMGRLGDIKTLQWLDVGHNYVSSLLPLSGSSSLETLWCQNNRLSDAKGVLRVLETLPSLRGLVVESNPFLTLQNI 123
            G+  L L+ N L+ LP+ +++LP+LRRLSASHNRL++        P     L  +  LQ LD+  N++  L  +S  + LE L    NRL    G +    TLP+LR L +  N   T+  +
Sbjct: 1883 GVHTLELNGNQLTMLPEPVTALPALRRLSASHNRLSAS-------PALQTHLSALTHLQSLDLSQNWLEEL-DVSALTGLERLVLHGNRLVYWPGGVL---TLPALRALDLRDNMIETIPQV 1993
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86117.20073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2N0DM69_9PSED5.480e-636.07RING-type E3 ubiquitin transferase n=3 Tax=Pseudom... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 23..42
e-value: 7.6
score: 14.6
coord: 1..20
e-value: 12.0
score: 13.1
NoneNo IPR availablePANTHERPTHR18849LEUCINE RICH REPEAT PROTEINcoord: 1..40
coord: 55..117
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 2..121
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..123
e-value: 3.5E-23
score: 83.6
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 1..36
e-value: 2.1E-6
score: 27.4
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 25..47
score: 6.888
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 3..24
score: 9.029
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 58..79
score: 6.68
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 80..101
score: 5.741

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86117contigM-pyrifera_M_contig86117:280..648 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86117.20073.1mRNA_M-pyrifera_M_contig86117.20073.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig86117 271..648 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig86117.20073.1 ID=prot_M-pyrifera_M_contig86117.20073.1|Name=mRNA_M-pyrifera_M_contig86117.20073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MPGLEVLVLSFNHLSHLPDLSSLPSLRRLSASHNRLTSLSFPLEKVPGEM
GRLGDIKTLQWLDVGHNYVSSLLPLSGSSSLETLWCQNNRLSDAKGVLRV
LETLPSLRGLVVESNPFLTLQNI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt