mRNA_M-pyrifera_M_contig109560.2007.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig109560.2007.1
Unique Name	mRNA_M-pyrifera_M_contig109560.2007.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517V873_9PLAN (RNA polymerase sigma-54 factor n=23 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V873_9PLAN)

HSP 1 Score: 237 bits (605), Expect = 2.910e-74
Identity = 114/120 (95.00%), Postives = 120/120 (100.00%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            NGPE+I+PLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLK+KEIIDGEDK+KPLSDDALVDAL++EGYNLARRTVTKYRKAMNIPSSRQRREY
Sbjct:  377 NGPEFIIPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKLKEIIDGEDKNKPLSDDALVDALSREGYNLARRTVTKYRKAMNIPSSRQRREY 496

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A7C2JZ28_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2JZ28_9PLAN)

HSP 1 Score: 212 bits (540), Expect = 1.770e-68
Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            +GPE IVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGT T  GE+VAW IIRLK+KEI+DGE+K  PLSDDALV+ LAK+GYNLARRTVTKYRKA+NIPSSRQRR Y
Sbjct:   57 HGPESIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTTTETGEEVAWDIIRLKLKEIVDGENKDDPLSDDALVEELAKQGYNLARRTVTKYRKALNIPSSRQRRAY 176

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A2D6SYW2_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SYW2_9PLAN)

HSP 1 Score: 218 bits (554), Expect = 1.130e-66
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
             GPE IVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGL+PLKRFFGGGTKT++GEDVAWGIIR+K++EI+DGEDKS+PLSDDALV+ L K GY LARRTVTKYRKAM+IPSSRQRREY
Sbjct:  374 KGPEAIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLFPLKRFFGGGTKTAEGEDVAWGIIRMKLREIVDGEDKSRPLSDDALVEELGKAGYTLARRTVTKYRKAMDIPSSRQRREY 493

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A3B1DGB5_9ZZZZ (RNA polymerase sigma-54 factor RpoN n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DGB5_9ZZZZ)

HSP 1 Score: 215 bits (547), Expect = 9.930e-66
Identity = 101/120 (84.17%), Postives = 113/120 (94.17%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            NGPEYI+PLKMQQIAD+V VHVTTVSRAVDDKWIQTPRG++PLKRFFGGGTKT++GEDVAW IIR+K++EIID EDK KPLSD+ALV  LAK+GY LARRT+TKYRKAMNIPSSRQRREY
Sbjct:  364 NGPEYIIPLKMQQIADIVEVHVTTVSRAVDDKWIQTPRGIFPLKRFFGGGTKTTEGEDVAWDIIRIKLQEIIDAEDKDKPLSDEALVKELAKQGYKLARRTITKYRKAMNIPSSRQRREY 483

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: UPI00199698B8 (RNA polymerase sigma-54 factor n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI00199698B8)

HSP 1 Score: 203 bits (517), Expect = 3.810e-64
Identity = 97/121 (80.17%), Postives = 109/121 (90.08%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGED-VAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
             GPE+I PLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGL+PLKRFFGGGTKT DGED VAW ++R+K++E+ID EDK  PLSDDALV+ + K GYNLARRTVTKYRK +NIPSSRQRR+Y
Sbjct:  116 KGPEFIAPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLFPLKRFFGGGTKTDDGEDDVAWAVVRIKLQEVIDKEDKDDPLSDDALVEEMKKLGYNLARRTVTKYRKKLNIPSSRQRRQY 236

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517QXD0_9BACT (RNA polymerase sigma-54 factor n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517QXD0_9BACT)

HSP 1 Score: 210 bits (534), Expect = 1.680e-63
Identity = 100/120 (83.33%), Postives = 111/120 (92.50%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            +GPE I PLKMQQIADVVGVHVTTVSRAVDDKW+QTPRGL+PLKRFFGGGT+TSDG++VAW IIR+K+KEI+D EDKS PLSDDALV+ L K GYNLARRTVTKYRK M+IPSSRQRREY
Sbjct:  394 DGPEAIAPLKMQQIADVVGVHVTTVSRAVDDKWVQTPRGLFPLKRFFGGGTQTSDGDEVAWDIIRMKLKEIVDNEDKSNPLSDDALVEELKKHGYNLARRTVTKYRKNMDIPSSRQRREY 513

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BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A518CHY5_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CHY5_9PLAN)

HSP 1 Score: 207 bits (528), Expect = 9.440e-63
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            NGP+ IVPLKMQQIADVVG HVTTVSRAVDDKWIQTPRGLYPLKRFFGGGT T+DGE+VAW  IR K+KE+IDGEDK  PLSDDALVDALAKEG  LARRTVTKYRK M IPSSR+RREY
Sbjct:  379 NGPQSIVPLKMQQIADVVGRHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTTTADGEEVAWENIRRKLKEVIDGEDKQSPLSDDALVDALAKEGLTLARRTVTKYRKKMGIPSSRERREY 498

[Close]

BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A3L7S9J6_9BACT (RNA polymerase sigma-54 factor (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7S9J6_9BACT)

HSP 1 Score: 196 bits (498), Expect = 1.120e-62
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 1

Query:    4 GPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            GPE IVPLKMQ+IADVV VHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGT T  GE+VAW IIR+K+KEI+D EDK+ PLSDDALV  LAK GY LARRTVTKYRK ++IPSSRQRR Y
Sbjct:   16 GPEAIVPLKMQEIADVVKVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTVTESGEEVAWDIIRIKLKEIVDHEDKNDPLSDDALVVELAKFGYTLARRTVTKYRKGLDIPSSRQRRAY 134

[Close]

BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517T718_9PLAN (RNA polymerase sigma-54 factor n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T718_9PLAN)

HSP 1 Score: 207 bits (527), Expect = 1.270e-62
Identity = 98/120 (81.67%), Postives = 111/120 (92.50%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            +GPE I PLKMQQIADVVGVHVTTVSRAVDDKW+QTPRGL+PLKRFFGGGT+T+DG++VAW IIR+K+KE++D EDKS PLSDDALV+ L K GY+LARRTVTKYRK MNIPSSRQRREY
Sbjct:  377 DGPEAIAPLKMQQIADVVGVHVTTVSRAVDDKWMQTPRGLFPLKRFFGGGTQTADGDEVAWDIIRIKLKEVVDNEDKSHPLSDDALVEELKKHGYHLARRTVTKYRKNMNIPSSRQRREY 496

[Close]

BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Match: A0A517Z7H4_9PLAN (RNA polymerase sigma-54 factor n=2 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z7H4_9PLAN)

HSP 1 Score: 206 bits (524), Expect = 3.180e-62
Identity = 100/120 (83.33%), Postives = 110/120 (91.67%), Query Frame = 1

Query:    1 NGPEYIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMNIPSSRQRREY 360
            NGPE+IVPLKMQQIAD VGVHVTTVSRAVDDK+I TPRG++ LKRFFGGGT TS+GE+VAW IIRLK+KEI+DGEDK  PLSDDALV+ L K GYNLARRTVTKYR+AMNIPSSRQRREY
Sbjct:  372 NGPEHIVPLKMQQIADQVGVHVTTVSRAVDDKYIATPRGVFALKRFFGGGTTTSEGEEVAWDIIRLKLKEIVDGEDKKSPLSDDALVEELKKHGYNLARRTVTKYRQAMNIPSSRQRREY 491

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig109560.2007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A517V873_9PLAN	2.910e-74	95.00	RNA polymerase sigma-54 factor n=23 Tax=Planctomyc...	[more]
A0A7C2JZ28_9PLAN	1.770e-68	85.83	RNA polymerase sigma-54 factor n=1 Tax=Schlesneria...	[more]
A0A2D6SYW2_9PLAN	1.130e-66	86.67	RNA polymerase sigma-54 factor n=1 Tax=Planctomyce...	[more]
A0A3B1DGB5_9ZZZZ	9.930e-66	84.17	RNA polymerase sigma-54 factor RpoN n=1 Tax=hydrot...	[more]
UPI00199698B8	3.810e-64	80.17	RNA polymerase sigma-54 factor n=1 Tax=Fuerstiella...	[more]
A0A517QXD0_9BACT	1.680e-63	83.33	RNA polymerase sigma-54 factor n=1 Tax=Planctomyce...	[more]
A0A518CHY5_9PLAN	9.440e-63	85.00	RNA polymerase sigma-54 factor n=1 Tax=Polystyrene...	[more]
A0A3L7S9J6_9BACT	1.120e-62	81.51	RNA polymerase sigma-54 factor (Fragment) n=1 Tax=...	[more]
A0A517T718_9PLAN	1.270e-62	81.67	RNA polymerase sigma-54 factor n=1 Tax=Calycomorph...	[more]
A0A517Z7H4_9PLAN	3.180e-62	83.33	RNA polymerase sigma-54 factor n=2 Tax=Maioricimon...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig109560	contig	M-pyrifera_M_contig109560:242..604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	218.0
Seed ortholog evalue	2.2e-54
Seed eggNOG ortholog	344747.PM8797T_30509
Preferred name	rpoN
KEGG ko	ko:K03092
KEGG Pathway	ko02020,ko05111,map02020,map05111
Hectar predicted targeting category	other localisation
EggNOG free text desc.	rna polymerase sigma-54 factor
EggNOG OGs	2IXGU@203682,COG1508@1,COG1508@2
COG Functional cat.	K
Best tax level	Planctomycetes
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03021
Exons	1
Model size	363
Cds size	333
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815606.1063538-CDS-M-pyrifera_M_contig109560:241..574	1622815606.1063538-CDS-M-pyrifera_M_contig109560:241..574	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig109560 242..574 -
1692277484.3000996-CDS-M-pyrifera_M_contig109560:241..574	1692277484.3000996-CDS-M-pyrifera_M_contig109560:241..574	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig109560 242..574 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815606.1174364-UTR-M-pyrifera_M_contig109560:574..604	1622815606.1174364-UTR-M-pyrifera_M_contig109560:574..604	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig109560 575..604 -
1692277484.3107078-UTR-M-pyrifera_M_contig109560:574..604	1692277484.3107078-UTR-M-pyrifera_M_contig109560:574..604	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig109560 575..604 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig109560.2007.1	prot_M-pyrifera_M_contig109560.2007.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig109560 242..574 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig109560:242..604-
coding sequence from alignment at M-pyrifera_M_contig109560:242..604-

protein sequence of mRNA_M-pyrifera_M_contig109560.2007.1

>prot_M-pyrifera_M_contig109560.2007.1 ID=prot_M-pyrifera_M_contig109560.2007.1|Name=mRNA_M-pyrifera_M_contig109560.2007.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVA
WGIIRLKMKEIIDGEDKSKPLSDDALVDALAKEGYNLARRTVTKYRKAMN
IPSSRQRREY*

mRNA from alignment at M-pyrifera_M_contig109560:242..604-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig109560.2007.1 ID=mRNA_M-pyrifera_M_contig109560.2007.1|Name=mRNA_M-pyrifera_M_contig109560.2007.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig109560:242..604- (Macrocystis pyrifera P11B4 male)
AACGGTCCGGAATACATCGTCCCCCTCAAAATGCAGCAGATCGCAGATGT
GGTTGGCGTGCACGTTACGACGGTCTCGCGTGCCGTCGATGATAAATGGA
TCCAGACTCCGCGTGGCTTGTATCCTCTCAAGCGTTTCTTTGGCGGCGGT
ACCAAGACCTCCGACGGGGAAGACGTGGCCTGGGGCATTATCCGTCTCAA
GATGAAAGAGATCATCGATGGGGAAGATAAAAGCAAACCGCTCAGTGATG
ACGCACTGGTCGATGCCCTGGCGAAGGAAGGTTACAACCTCGCACGACGA
ACCGTAACCAAATATCGCAAAGCGATGAATATCCCCTCATCCCGACAACG
GCGTGAGTATTAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109560:242..604-

>mRNA_M-pyrifera_M_contig109560.2007.1 ID=mRNA_M-pyrifera_M_contig109560.2007.1|Name=mRNA_M-pyrifera_M_contig109560.2007.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig109560:242..604- (Macrocystis pyrifera P11B4 male)
ATGCAGCAGATCGCAGATGTGGTTGGCGTGCACGTTACGACGGTCTCGCG
TGCCGTCGATGATAAATGGATCCAGACTCCGCGTGGCTTGTATCCTCTCA
AGCGTTTCTTTGGCGGCGGTACCAAGACCTCCGACGGGGAAGACGTGGCC
TGGGGCATTATCCGTCTCAAGATGAAAGAGATCATCGATGGGGAAGATAA
AAGCAAACCGCTCAGTGATGACGCACTGGTCGATGCCCTGGCGAAGGAAG
GTTACAACCTCGCACGACGAACCGTAACCAAATATCGCAAAGCGATGAAT
ATCCCCTCATCCCGACAACGGCGTGAGTATTAAATGCAGCAGATCGCAGA
TGTGGTTGGCGTGCACGTTACGACGGTCTCGCGTGCCGTCGATGATAAAT
GGATCCAGACTCCGCGTGGCTTGTATCCTCTCAAGCGTTTCTTTGGCGGC
GGTACCAAGACCTCCGACGGGGAAGACGTGGCCTGGGGCATTATCCGTCT
CAAGATGAAAGAGATCATCGATGGGGAAGATAAAAGCAAACCGCTCAGTG
ATGACGCACTGGTCGATGCCCTGGCGAAGGAAGGTTACAACCTCGCACGA
CGAACCGTAACCAAATATCGCAAAGCGATGAATATCCCCTCATCCCGACA
ACGGCGTGAGTATTAA