mRNA_M-pyrifera_M_contig8608.20062.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8608.20062.1
Unique NamemRNA_M-pyrifera_M_contig8608.20062.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8608.20062.1 vs. uniprot
Match: D7FPZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ0_ECTSI)

HSP 1 Score: 617 bits (1590), Expect = 2.090e-204
Identity = 414/945 (43.81%), Postives = 547/945 (57.88%), Query Frame = 1
Query:    1 MAEGDIQKNERAHMRLEDAEAMHLLKLKEARRRKQDYAMYYEFARRYGPLAAGEFELAILPGRRYHAKISDASRAIQNWWWSVWPSTLRRRKAGALVIQSLFRGFLQRRRWYAIIRLRTLWGSTRIAAHAFLQWRDMVMKTRKVKAFARRLRYRCEAQCFAILVAHARQKHQSREEILRRRLQKISEGLRLRVFEGWDWRVRHLMDAEQQRRGRLQTAIDRDASLAQQAASAFLRTPDGKSAVANKLRRTAAAHTAPDVEARKEVARMFVRRRQALTKHDFNVTSPPP-LRCPRFD-CDATFVNPAHYVRHAADVHPKDGPEIAELALLMHIPVGLALLERWIGTATAAG-----------GESDAHADREQTEKVLFTSEKCKTVENAFLVLWKTIEDWRTAPSSSDDYQRLGRSVLSKISSSSSMMGTTNSKGSDRLSGEVAGSE--PVVFSLGSSSLGTTKHKNASGI-THGLPMTEYTP---SEDA-----INPLAFEEASWRALVSLNGV-AGRAFLTSTPYAKYLDEMERPRREAIEAKAADIAKRKHAESLAEARKLREEAFLRVQEGMVDELAEKALTLFLRGTGTAAASSFLGDLVEDQATLLSVVIIAERSVFAKIISAVWNEAVDEAATAESAARREHREISPAIVDTLSEAASAVVRSRVMDQLIDDCILDLTGPQGELWADARAMVAVADGVGYRVRCDVIEYMLEASIVELQESGEAEQLMSDAERKRGREAEAAVNAANASEXXXXXXXXXEEEDLSEATGEAEETATTADAAATDDNLLSPSVTGGGRGALGLDERY----------------VFTTGDDEVEESFRQGWEGGGTNGARNYDTSAAIISIAQEDAAVAAQSAPTPSPEDAAVVVQSAWRRQMVYRGMRTLVAQNFVKLYDPAYGAFYWYNQATGESTWEKPAIIDAYFK 2712
            MAE D+QK E   MRLEDAEA  L KL+EA+RRKQDY+ YY  A RYGPL   +F+LA  PG  YH KI DA+R IQ WWWSVWP  LR RKA AL IQS FRGFLQR++W AIIRLRTLWG+TRI  H+F+ WR  +    +VK F  RL  R + + F  L+++A+++  +REE+LR+R++++SEG+RLRVFE WD+RVR L+D EQ+R  RL+ A+DR     ++ A AFL T  GK AVA+ L  TA   +  + EA++E+ R FV R QAL +HDFN TSPPP L CPR D CDATFV+  H +RHAADVHP D P +AEL++ M  PVGLA+ E ++  A  A              SD     +Q+++    +          L +WK I+ WR   S    +Q+LG +++        +  T      D +   + G +   +   LG++  G    K   G   H   +   +P    +DA     + P A EEAS+RA+  L+    G AFL S+ Y  YLD + +P R A+EA +A+IA  + AE  AEA  LR+ A  R QE  V+ LA +A  L L+G   A  +S LG L++DQA+LL+VVIIAERS FAK+ISAVWNE VDEAA        E REI P +   LSEAA +  RSR+MD+LID C +DLTGP+G+LWADAR M AVADG+GY+VR  V+  +++ ++ EL  SGEAE+LMS+A   R R  +                   E  +  EA  EA+  A   D  A                                        +   G DEV        E GGT+G    ++S      +   ++V +  A T    +AAV++QSA RR+  YR M+ +VAQNF+++YDP  GAFYWYNQAT ESTW+KP IID YFK
Sbjct:    1 MAEADVQKVELDQMRLEDAEATTLSKLEEAQRRKQDYSTYYGLAVRYGPLPGEKFDLATYPGSHYHGKILDATRVIQIWWWSVWPPLLRHRKAAALAIQSQFRGFLQRQKWRAIIRLRTLWGNTRIVTHSFVVWRITITTALRVKTFTGRLSNRRKGRVFGALLSNAQERRAAREELLRQRIRRVSEGVRLRVFESWDFRVRGLIDVEQRRLDRLRAALDRHTPSIKKNALAFLGTAAGKEAVASTLA-TAPPASESEAEAKQEMVRRFVWREQALMRHDFNTTSPPPPLCCPRSDSCDATFVDRGHALRHAADVHPTDSPGVAELSVTMRDPVGLAVFEEFVEAAAVAAEPDGKGSFTRQASSDEQPPVKQSDQGSTPASSVGAAARDTLDVWKAIQAWRLISSDQKRFQQLGEAII--------LSRTKYPHLPDDVRVALGGEQLRRLFGELGATHGGKPNKKLLPGRGNHTSTLQRPSPPRSGDDARVTTVVEPSALEEASFRAVAFLSECQVGLAFLGSSAYRTYLDGVHKPMRNAVEAASAEIAAAEEAEWAAEAHSLRKAALDREQEAQVECLANQATRLVLQG---AVGASLLGGLIDDQASLLAVVIIAERSTFAKVISAVWNETVDEAA---HLIALEDREIDPGVASALSEAACSFARSRIMDELIDQCGVDLTGPEGDLWADARPMEAVADGLGYQVRSKVMSELVDEAVSELAASGEAEELMSEAALARRRRED-------------------ELREGGEAKDEADGIAGAGDVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVLVGADEVRGGLE---EAGGTDGEGRRESSVDRTGGSSGRSSVGSTLAET----EAAVLMQSALRRKAAYREMKKVVAQNFIRMYDPGEGAFYWYNQATMESTWDKPVIIDLYFK 904          
BLAST of mRNA_M-pyrifera_M_contig8608.20062.1 vs. uniprot
Match: A0A6H5JX87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX87_9PHAE)

HSP 1 Score: 525 bits (1352), Expect = 1.610e-167
Identity = 396/1046 (37.86%), Postives = 526/1046 (50.29%), Query Frame = 1
Query:   76 KLKEARRRKQDYAMYYEFARRYGPLAAGEFELAILPGRRYHAKISDASRAIQNWWWSVWPSTLRRRKAGALVIQSLFRGFLQRRRWYAIIRLRTLWGSTRIAAHAFLQWRDMVMKTRKVKAFARRLRYRCEAQCFAILVAHARQKHQSREEILRRRLQKISEGLRLRVFEGW---------------------------------------DW-------------------------------------------------------------------------------------------RVRHLMDAEQQRRGRLQTAIDRDASLAQQAASAFLRTPDGKSAVANKLRRTAAAHTAPDVEARKEVARMFVRRRQALTKHDFNVT-SPPPLRCPRFD-CDATFVNPAHYVRHAADVHPKDGPEIAELALLMHIPVGLALLERWIGTATAAG-----GESDAHADREQTEKVL-----FTSEKCK-TVENAFLVLWKTIEDWRTAPSSSDDYQRLGRSVLSKISSSSSMMGTTN-SKGSD---RLSGEVA---GSEPVVFSL-GSSSLGTTKHKNASGITHGLPMTEYTPSEDAINPLAFEEASWRALVSLNGV-AGRAFLTSTPYAKYLDEMERPRREAIEAKAADIAKRKHAESLAEARKLREEAFLRVQEGMVDELAEKALTLFLRGTGTAAASSFLGDLVEDQATLLSVVIIAERSVFAKIISAVWNEAVDEAATAESAARREHREISPAIVDTLSEAASAVVRSRVMDQLIDDCILDLTGPQGELWADARAMVAVADGVGYRVRCDVIEYMLEASIVELQESGEAEQLMSDAE-RKRGREAEAAVNAANASEXXXXXXXXXEEEDLSEATGEAEETATTADAAATDDNLLSPSVTGGGRGALGLDERY--------------VFTTGDDEVEESFRQGWEGGGTNGARNYDTSAAIISIAQEDAAVAAQSAPTPSPEDAAVVVQSAWRRQMVYRGMRTLVAQNFVKLYDPAYGAFYWYNQATGESTWEKPAIIDAYFK 2712
            + +EA+RRKQDY  YY  A RYGPL   +F+ A  PG  YH K+ DA+R IQ WWWS WP  LR RKA ALVIQS FRGFLQRR+W AIIRLRTLWG+TRI  H+F+ WR  +    +VKAF  RL  R   + F  L+++A+++  +REE+LR+ ++++SEG+RLRVFE W                                       DW                                                                                           RVR L+D EQ+R  RL+  +DR     ++ A AFL T  GK AVA++L  TA   +  + EA++E+ + FV R QAL +HDFN T  PPPL CPR D CDATFV+  H +RHAADVHP D P +AEL++ M  PVGLA+ E ++  A AA      G S   A  ++   V      FT +          L +WK I+ WR   S    +Q+LG +++   +    +      + G D   RL GE+    G++P    L G ++  +T+ + +       P +        ++P A EEAS+RA+V L+    G AFL S PY  YLD + +P R+A+EA AA+IA  + AE  AEAR LR+ A  R QE  V+ LA +A  L L+G   A  +S LG L++DQA+LL+VVIIAERS FAK+ISAVWNE VDEAA        E+REI P +   LSEAA ++ RSR+MD+LID C +DLTGP+G+LWADAR   AVADG+GY+V           +++EL  SGEAE+LMS+A   +R RE E                         EAT EA+                                                +   G DEV        E GG +G    + S      +   ++  +  A T    +AAV++QSA RR+  YR M+ +VAQNF+++YDP  GAFYWYNQAT ESTW+KPAIID YFK
Sbjct:   21 RFEEAQRRKQDYGTYYGLAVRYGPLPGDQFDHATYPGSHYHGKVLDATRIIQIWWWSAWPPLLRHRKAAALVIQSQFRGFLQRRKWRAIIRLRTLWGNTRIVTHSFVVWRTTITTALRVKAFTGRLSNRRRGRIFVALLSNAQERRATREELLRQCIRRVSEGVRLRVFESWVRYTETSLAVERLRFRSVARRWFREWRDVALEDRIRSRMDWACSTLASRLLRWKHRSRYVRVRKSCVKMQVVVKMKKSCARRKRKVKASRVRRAEETVQKLKVQRSTFDSSILVLLVSTVCTLTSVTRTKDVRVRGLIDVEQRRLDRLRATLDRHTPSIKENALAFLGTAAGKEAVASRLA-TAPPASESEAEAKQEMVQRFVWREQALIRHDFNTTWPPPPLCCPRSDSCDATFVDRGHALRHAADVHPTDPPGVAELSVTMRDPVGLAVFEEFVKAAAAAAEPDGKGSSTRQASSDEQPPVKQRNQGFTPDSSVGAAARDTLDVWKAIQAWRLVSSDQKRFQQLGEAIIVSRTKYPHLPDDVRVAIGGDQLRRLFGELGAKHGAKPNKKLLPGRANHSSTRQRPSP------PRSGDGARVTTVDPSALEEASFRAVVFLSKCQVGLAFLGSAPYRTYLDGVHKPTRDAVEAAAAEIAAAEEAEWAAEARSLRKAALDREQEAQVESLANQATRLVLQG---AVGASLLGGLIDDQASLLAVVIIAERSTFAKVISAVWNETVDEAA---HLIALENREIDPRVASALSEAACSLARSRIMDELIDQCGVDLTGPEGDLWADARPTEAVADGLGYQVXXXXXXXXXXXAVLELAASGEAEELMSEAALARRRREGELREGG--------------------EATDEADRVTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVLVGADEVRGGLE---EAGGADGEXXREGSIDRTGGSSGRSSGGSMLAET----EAAVLMQSALRRKAAYREMKKVVAQNFIRMYDPGEGAFYWYNQATMESTWDKPAIIDLYFK 1026          
BLAST of mRNA_M-pyrifera_M_contig8608.20062.1 vs. uniprot
Match: A0A835Z292_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z292_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.330e-8
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 1
Query: 2437 ARNYDTSAAIISIAQEDAAVAAQSAPTPSPEDAAVVVQSAWRRQMVYRGMRTLVAQNFVKLYDPAYGAFYWYNQATGESTWEKPAIIDAYFKTNA 2721
            A  ++ S A++ +       AA+ A    P  AAV +QS  R     R MR L+A ++VKLYD   G +YWYN ATG S+WEKP I+  +++  A
Sbjct:  962 APTHENSLALVPVGTG----AAEGAQPLLPFAAAVAIQSMIRGMHARRQMRALIAASYVKLYDAESGFWYWYNSATGASSWEKPVIVQRFYRAPA 1052          
BLAST of mRNA_M-pyrifera_M_contig8608.20062.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.030e-5
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 2509 APTPSPEDAAVVVQSAWRRQMVYRGMRTLVAQNFVKLYDPAYGAFYWYNQATGESTWEKPAIIDA 2703
            APT + E+AAV++Q+AWRR+   R  R L+A    K++D + GA Y++N  +GE++W KPA+  A
Sbjct:   78 APTYTEEEAAVMLQAAWRRRRGIRMTRALLASVVSKVFDESTGAHYYFNGLSGETSWSKPALFGA 142          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8608.20062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPZ0_ECTSI2.090e-20443.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX87_9PHAE1.610e-16737.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z292_9STRA9.330e-840.00WW domain-containing protein n=1 Tax=Tribonema min... [more]
D8LE76_ECTSI3.030e-544.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8608contigM-pyrifera_M_contig8608:2307..6705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score632.5
Seed ortholog evalue3.1e-178
Seed eggNOG ortholog2880.D7FPZ0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs2D0S7@1,2SF74@2759
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-01_008130.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2724
Cds size2724
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8608.20062.1prot_M-pyrifera_M_contig8608.20062.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8608 2307..6705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.3248987-CDS-M-pyrifera_M_contig8608:2306..23831622816771.3248987-CDS-M-pyrifera_M_contig8608:2306..2383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 2307..2383 +
1692278168.8500757-CDS-M-pyrifera_M_contig8608:2306..23831692278168.8500757-CDS-M-pyrifera_M_contig8608:2306..2383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 2307..2383 +
1622816771.3362806-CDS-M-pyrifera_M_contig8608:2686..32001622816771.3362806-CDS-M-pyrifera_M_contig8608:2686..3200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 2687..3200 +
1692278168.8643672-CDS-M-pyrifera_M_contig8608:2686..32001692278168.8643672-CDS-M-pyrifera_M_contig8608:2686..3200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 2687..3200 +
1622816771.3484604-CDS-M-pyrifera_M_contig8608:3879..40301622816771.3484604-CDS-M-pyrifera_M_contig8608:3879..4030Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 3880..4030 +
1692278168.876151-CDS-M-pyrifera_M_contig8608:3879..40301692278168.876151-CDS-M-pyrifera_M_contig8608:3879..4030Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 3880..4030 +
1622816771.3587239-CDS-M-pyrifera_M_contig8608:4120..51271622816771.3587239-CDS-M-pyrifera_M_contig8608:4120..5127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 4121..5127 +
1692278168.8940067-CDS-M-pyrifera_M_contig8608:4120..51271692278168.8940067-CDS-M-pyrifera_M_contig8608:4120..5127Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 4121..5127 +
1622816771.3700752-CDS-M-pyrifera_M_contig8608:5652..61621622816771.3700752-CDS-M-pyrifera_M_contig8608:5652..6162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 5653..6162 +
1692278168.9039204-CDS-M-pyrifera_M_contig8608:5652..61621692278168.9039204-CDS-M-pyrifera_M_contig8608:5652..6162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 5653..6162 +
1622816771.3810847-CDS-M-pyrifera_M_contig8608:6240..67051622816771.3810847-CDS-M-pyrifera_M_contig8608:6240..6705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 6241..6705 +
1692278168.912745-CDS-M-pyrifera_M_contig8608:6240..67051692278168.912745-CDS-M-pyrifera_M_contig8608:6240..6705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8608 6241..6705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8608.20062.1

>prot_M-pyrifera_M_contig8608.20062.1 ID=prot_M-pyrifera_M_contig8608.20062.1|Name=mRNA_M-pyrifera_M_contig8608.20062.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=908bp
MAEGDIQKNERAHMRLEDAEAMHLLKLKEARRRKQDYAMYYEFARRYGPL
AAGEFELAILPGRRYHAKISDASRAIQNWWWSVWPSTLRRRKAGALVIQS
LFRGFLQRRRWYAIIRLRTLWGSTRIAAHAFLQWRDMVMKTRKVKAFARR
LRYRCEAQCFAILVAHARQKHQSREEILRRRLQKISEGLRLRVFEGWDWR
VRHLMDAEQQRRGRLQTAIDRDASLAQQAASAFLRTPDGKSAVANKLRRT
AAAHTAPDVEARKEVARMFVRRRQALTKHDFNVTSPPPLRCPRFDCDATF
VNPAHYVRHAADVHPKDGPEIAELALLMHIPVGLALLERWIGTATAAGGE
SDAHADREQTEKVLFTSEKCKTVENAFLVLWKTIEDWRTAPSSSDDYQRL
GRSVLSKISSSSSMMGTTNSKGSDRLSGEVAGSEPVVFSLGSSSLGTTKH
KNASGITHGLPMTEYTPSEDAINPLAFEEASWRALVSLNGVAGRAFLTST
PYAKYLDEMERPRREAIEAKAADIAKRKHAESLAEARKLREEAFLRVQEG
MVDELAEKALTLFLRGTGTAAASSFLGDLVEDQATLLSVVIIAERSVFAK
IISAVWNEAVDEAATAESAARREHREISPAIVDTLSEAASAVVRSRVMDQ
LIDDCILDLTGPQGELWADARAMVAVADGVGYRVRCDVIEYMLEASIVEL
QESGEAEQLMSDAERKRGREAEAAVNAANASEAAAAAAAAMEEEDLSEAT
GEAEETATTADAAATDDNLLSPSVTGGGRGALGLDERYVFTTGDDEVEES
FRQGWEGGGTNGARNYDTSAAIISIAQEDAAVAAQSAPTPSPEDAAVVVQ
SAWRRQMVYRGMRTLVAQNFVKLYDPAYGAFYWYNQATGESTWEKPAIID
AYFKTNA*
back to top

mRNA from alignment at M-pyrifera_M_contig8608:2307..6705+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8608.20062.1 ID=mRNA_M-pyrifera_M_contig8608.20062.1|Name=mRNA_M-pyrifera_M_contig8608.20062.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4399bp|location=Sequence derived from alignment at M-pyrifera_M_contig8608:2307..6705+ (Macrocystis pyrifera P11B4 male)
ATGGCGGAGGGCGACATCCAGAAGAATGAGCGAGCCCATATGAGACTGGA AGACGCGGAAGCCATGCACCTTCTCAAGTAAGAGGACCGTATGAGTATAC CTCGCTCGGCATTTCTTCGACACATGTTGTGTACCGTACTGGTACGGTAG TATCATATTAATGATATCTTGTTTTGTTTCGTGCACAAAGGGTGGTAATT TGTTAGGTGTACGCGCAATATCCACTTGATTGAGTATCATGCAATCTTCA GCAAGTGACTCCTGTTCGTTGCTTTTTAGCGACATCATTGCCAGGAATTA ATCGTTGTCAGCCACCTTCTCAATTTTTGTCTTCGCCGTTGTATACACTA CGACTGGTTGCTGCAACCCGGCCCGGAAAGGTTGAAGGAAGCACGGCGAC GGAAGCAAGACTACGCCATGTACTACGAGTTCGCTAGACGTTACGGTCCC CTGGCCGCAGGAGAGTTCGAGCTGGCTATTTTACCGGGGAGGCGGTATCA CGCCAAAATTTCCGACGCCTCAAGGGCAATTCAAAACTGGTGGTGGAGCG TCTGGCCCTCAACGTTACGCCGTCGAAAAGCGGGGGCCCTGGTCATACAA TCGTTGTTTCGGGGCTTCCTCCAACGGAGAAGGTGGTACGCCATTATCCG GCTGAGGACGCTCTGGGGGAGCACCCGGATCGCGGCTCACGCTTTCCTAC AGTGGAGGGACATGGTGATGAAAACAAGGAAAGTAAAGGCCTTTGCTCGA CGCCTTCGCTACCGCTGCGAAGCCCAGTGCTTCGCGATACTCGTGGCTCA CGCGAGGCAGAAACATCAATCGAGGGAAGAGATCTTGCGACGGCGCCTGC AAAAAATATCGGAGGGGCTTCGACTCCGAGTGTTTGAGGGCTGGGTGAGC TACACTCAGACCTCGCTGGCCGTCGAGCGCATGCGTTGGCGCTCTGTGAT CCGGCCTGCATTCAGGATTTGGGGGGGGCATGCGTTGGAGAACCGGCGAC ATCACCGTCTATGTTCAGCGTCCGCGACGATTATTCACAGGCTTCTCGGT TGGCGGCGAAGGGCACGATTCGTCAACCTTCGGAGGGTATGCATAAACAT GCAGGCCATTGCAAGGACGAAACTTACCTGGATTCAGACGAAACAAAAAG TTAAGGAGTCACTCATGTGCCAGGCAGAGGAGGCCGTTCGGTCGCTTGAG GTGAGAGAAAGAAGATATAAAAAGTCGGAGCACACACATACGCACATGCG AATGATCCATCAACGCCGTTAAATCGTCAGTTCGGTCAAACGTCCCAAGA CGGGTACACGTACGCATAGTTCCTCGAGTCGTTCGTCGAAATATATTATC GTGTCTTGAAACATGTAGGGCTAGAGTTCTCCCCACAACCCGTTAGAGAC ACGATATGTAATTCGCTCTTACTGCATGTCTTTCAGATGTTGGTTTTAGC ATCGGACCCCTTGTTGGTTATTTACCGTAGCACTACCCCCTAGCCTACAT AGTCAGGTGGTATGTAACCGACACACAATCTTTTCCCGACCCATACGTTA CAATTTTGTCAAACGAAAAAAAGGACTGGCGAGTTCGTCATCTGATGGAC GCTGAGCAACAACGCCGAGGGCGCCTTCAAACTGCCATCGATCGGGACGC GTCTTTGGCCCAGCAAGCCGCCTCCGCGTTTCTGCGCACACCGGATGGAA AAAGTGCCGTCGCGAACAAGCTTCGTGCAAGGAAGAAGACAGAAGAAGAG GAAGAGACAAAGAACTTCGCCAACGGGCCTGGCGAGGGGACCTCAAATAA ACCCGCCAAGAGAGGTCGCACGGCTGCTGCTCACACCGCACCCGACGTGG AAGCAAGGAAGGAGGTCGCCCGGATGTTCGTGCGACGAAGGCAGGCGTTG ACCAAGCACGACTTCAACGTCACCTCGCCACCGCCGTTGCGATGTCCGCG TTTCGATTGCGACGCAACTTTCGTGAACCCTGCCCACTACGTTCGTCATG CAGCGGACGTCCACCCGAAAGACGGCCCAGAAATCGCGGAGTTAGCCCTG TTGATGCATATACCTGTTGGACTCGCGCTGCTCGAAAGATGGATCGGCAC GGCCACCGCTGCCGGCGGCGAGAGCGATGCGCACGCTGATCGGGAACAGA CTGAGAAAGTATTGTTCACCAGCGAGAAATGCAAAACCGTGGAAAACGCC TTTTTGGTGCTGTGGAAGACGATCGAGGATTGGAGGACGGCGCCGAGCTC TTCCGACGACTACCAGAGGCTGGGTAGGTCTGTCTTGAGCAAAATTTCGT CGTCGTCGTCGATGATGGGCACAACGAATTCGAAGGGAAGCGATCGCCTT TCCGGCGAGGTCGCTGGCTCGGAACCAGTTGTGTTTTCTTTGGGTAGCAG CAGTCTGGGAACAACGAAACATAAAAACGCCTCCGGCATCACCCACGGAC TCCCGATGACGGAGTACACTCCAAGTGAGGACGCCATCAACCCTTTGGCT TTCGAGGAGGCTAGTTGGCGAGCCCTCGTGAGCTTGAACGGAGTGGCAGG GCGAGCGTTCCTGACGAGTACGCCGTACGCAAAGTATCTCGACGAGATGG AGAGGCCGAGGAGGGAGGCCATCGAGGCGAAGGCGGCCGACATCGCCAAA CGAAAGCATGCTGAGTCGCTAGCGGAGGCGCGAAAGCTTCGAGAAGAAGC GTTTCTTCGTGTGCAGGAGGGTATGGTCGATGAGTTGGCCGAGAAGGCGC TGACGCTGTTTCTGCGAGGGACTGGGACTGCTGCTGCTTCGAGCTTTCTC GGAGACCTGGTGGAAGATCAGGTACGCACGATTTTTTACAGCCTTCTTCC GCTGTTGTGATTCGATATCATAGTAAGCAGACAGCGGGGGATGTGGTTCA TATCTCACGAAGTCAAGCCAACAAATAGTCTTCCAGTATGCTTACTCTAC TGTAGTGCTACTGTTTGAATCCCCTGGCGTAGCTTCGAGGCACCACGTCG TCCTCCACGGGCAAGCGTGCCCGGGGCAAACAAAAGGCGAATAAATTTAT TTTCGGGACATTCACTCCAACTTTTACAGTAGATGCGTCCGTCTTTGGGT AGGGTGGGAACGATAACTCGCCATCTCCCGCTGTGCAGAGCACAAGGTCA CCTCTTTCAGCGCATGCAATACTCGGCAATAGGTACGTGCAGCATGGGCG GAAACAACATGTTCTATTTGGGCTTGTTTACTACAATACCGAAACCACTT TTCCACAATAGAGGTTAACTTGATCATATTATGATAAAGTGTAGACTGTG ACAATGAATACGTCTCGCTTGCTGCTCCTCCCAAACAACAAGACAGGCGA CACTCCTGTCCGTGGTCATAATCGCTGAGCGAAGCGTGTTCGCCAAGATA ATATCGGCCGTGTGGAACGAGGCGGTGGACGAAGCCGCGACCGCAGAAAG CGCGGCTCGCCGAGAGCACCGAGAAATCTCTCCCGCAATCGTCGACACTC TGTCCGAAGCAGCTTCCGCGGTGGTTCGCTCTCGAGTCATGGATCAGCTC ATCGACGACTGCATTCTGGATCTCACAGGGCCGCAAGGCGAACTTTGGGC CGACGCGCGTGCGATGGTGGCCGTGGCGGACGGTGTGGGGTACCGCGTGC GGTGTGACGTTATCGAATATATGTTGGAGGCGTCAATTGTCGAGCTTCAG GAGTCTGGGGAAGCGGAGCAGCTGATGTCAGACGCGGAGCGAAAGAGGGG GAGGGAGGCGGAGGCCGCAGTGAACGCGGCGAACGCGAGTGAGGCAGCAG CAGCAGCAGCAGCAGCGATGGAGGAGGAGGACCTGTCTGAAGCAACCGGC GAAGCGGTGGTAGCTGCCACACACTTAGTAGTGCTTGGCGTAGCTGAGGC AGCACAGCAAGAAAAGCCCAGCGTAGACGCGCAGGAAGAAACCGCCACCA CCGCAGATGCTGCAGCGACGGACGACAACTTATTGTCGCCCAGTGTAACG GGAGGGGGAAGAGGGGCTCTCGGCTTGGACGAAAGATACGTCTTTACAAC CGGGGACGACGAAGTAGAAGAAAGCTTTCGCCAGGGGTGGGAAGGCGGTG GGACAAATGGTGCTAGAAACTATGACACGTCGGCGGCAATAATATCAATT GCTCAAGAGGACGCGGCAGTAGCGGCGCAATCGGCACCTACACCGTCCCC AGAGGATGCAGCGGTGGTGGTGCAGTCGGCGTGGAGGCGCCAGATGGTGT ACCGTGGGATGAGGACGTTGGTCGCGCAAAACTTCGTCAAACTGTACGAC CCCGCCTACGGGGCCTTCTACTGGTACAACCAGGCTACGGGAGAGTCCAC CTGGGAAAAGCCGGCCATCATCGACGCTTACTTCAAGACTAACGCCTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8608:2307..6705+

>mRNA_M-pyrifera_M_contig8608.20062.1 ID=mRNA_M-pyrifera_M_contig8608.20062.1|Name=mRNA_M-pyrifera_M_contig8608.20062.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5448bp|location=Sequence derived from alignment at M-pyrifera_M_contig8608:2307..6705+ (Macrocystis pyrifera P11B4 male)
ATGGCGGAGGGCGACATCCAGAAGAATGAGCGAGCCCATATGAGACTGGA
AGACGCGGAAGCCATGCACCTTCTCAAATGGCGGAGGGCGACATCCAGAA
GAATGAGCGAGCCCATATGAGACTGGAAGACGCGGAAGCCATGCACCTTC
TCAAGTTGAAGGAAGCACGGCGACGGAAGCAAGACTACGCCATGTACTAC
GAGTTCGCTAGACGTTACGGTCCCCTGGCCGCAGGAGAGTTCGAGCTGGC
TATTTTACCGGGGAGGCGGTATCACGCCAAAATTTCCGACGCCTCAAGGG
CAATTCAAAACTGGTGGTGGAGCGTCTGGCCCTCAACGTTACGCCGTCGA
AAAGCGGGGGCCCTGGTCATACAATCGTTGTTTCGGGGCTTCCTCCAACG
GAGAAGGTGGTACGCCATTATCCGGCTGAGGACGCTCTGGGGGAGCACCC
GGATCGCGGCTCACGCTTTCCTACAGTGGAGGGACATGGTGATGAAAACA
AGGAAAGTAAAGGCCTTTGCTCGACGCCTTCGCTACCGCTGCGAAGCCCA
GTGCTTCGCGATACTCGTGGCTCACGCGAGGCAGAAACATCAATCGAGGG
AAGAGATCTTGCGACGGCGCCTGCAAAAAATATCGGAGGGGCTTCGACTC
CGAGTGTTTGAGGGCTGGGTTGAAGGAAGCACGGCGACGGAAGCAAGACT
ACGCCATGTACTACGAGTTCGCTAGACGTTACGGTCCCCTGGCCGCAGGA
GAGTTCGAGCTGGCTATTTTACCGGGGAGGCGGTATCACGCCAAAATTTC
CGACGCCTCAAGGGCAATTCAAAACTGGTGGTGGAGCGTCTGGCCCTCAA
CGTTACGCCGTCGAAAAGCGGGGGCCCTGGTCATACAATCGTTGTTTCGG
GGCTTCCTCCAACGGAGAAGGTGGTACGCCATTATCCGGCTGAGGACGCT
CTGGGGGAGCACCCGGATCGCGGCTCACGCTTTCCTACAGTGGAGGGACA
TGGTGATGAAAACAAGGAAAGTAAAGGCCTTTGCTCGACGCCTTCGCTAC
CGCTGCGAAGCCCAGTGCTTCGCGATACTCGTGGCTCACGCGAGGCAGAA
ACATCAATCGAGGGAAGAGATCTTGCGACGGCGCCTGCAAAAAATATCGG
AGGGGCTTCGACTCCGAGTGTTTGAGGGCTGGGACTGGCGAGTTCGTCAT
CTGATGGACGCTGAGCAACAACGCCGAGGGCGCCTTCAAACTGCCATCGA
TCGGGACGCGTCTTTGGCCCAGCAAGCCGCCTCCGCGTTTCTGCGCACAC
CGGATGGAAAAAGTGCCGTCGCGAACAAGCTTCGACTGGCGAGTTCGTCA
TCTGATGGACGCTGAGCAACAACGCCGAGGGCGCCTTCAAACTGCCATCG
ATCGGGACGCGTCTTTGGCCCAGCAAGCCGCCTCCGCGTTTCTGCGCACA
CCGGATGGAAAAAGTGCCGTCGCGAACAAGCTTCGTCGCACGGCTGCTGC
TCACACCGCACCCGACGTGGAAGCAAGGAAGGAGGTCGCCCGGATGTTCG
TGCGACGAAGGCAGGCGTTGACCAAGCACGACTTCAACGTCACCTCGCCA
CCGCCGTTGCGATGTCCGCGTTTCGATTGCGACGCAACTTTCGTGAACCC
TGCCCACTACGTTCGTCATGCAGCGGACGTCCACCCGAAAGACGGCCCAG
AAATCGCGGAGTTAGCCCTGTTGATGCATATACCTGTTGGACTCGCGCTG
CTCGAAAGATGGATCGGCACGGCCACCGCTGCCGGCGGCGAGAGCGATGC
GCACGCTGATCGGGAACAGACTGAGAAAGTATTGTTCACCAGCGAGAAAT
GCAAAACCGTGGAAAACGCCTTTTTGGTGCTGTGGAAGACGATCGAGGAT
TGGAGGACGGCGCCGAGCTCTTCCGACGACTACCAGAGGCTGGGTAGGTC
TGTCTTGAGCAAAATTTCGTCGTCGTCGTCGATGATGGGCACAACGAATT
CGAAGGGAAGCGATCGCCTTTCCGGCGAGGTCGCTGGCTCGGAACCAGTT
GTGTTTTCTTTGGGTAGCAGCAGTCTGGGAACAACGAAACATAAAAACGC
CTCCGGCATCACCCACGGACTCCCGATGACGGAGTACACTCCAAGTGAGG
ACGCCATCAACCCTTTGGCTTTCGAGGAGGCTAGTTGGCGAGCCCTCGTG
AGCTTGAACGGAGTGGCAGGGCGAGCGTTCCTGACGAGTACGCCGTACGC
AAAGTATCTCGACGAGATGGAGAGGCCGAGGAGGGAGGCCATCGAGGCGA
AGGCGGCCGACATCGCCAAACGAAAGCATGCTGAGTCGCTAGCGGAGGCG
CGAAAGCTTCGAGAAGAAGCGTTTCTTCGTGTGCAGGAGGGTATGGTCGA
TGAGTTGGCCGAGAAGGCGCTGACGCTGTTTCTGCGAGGGACTGGGACTG
CTGCTGCTTCGAGCTTTCTCGGAGACCTGGTGGAAGATCAGGTCGCACGG
CTGCTGCTCACACCGCACCCGACGTGGAAGCAAGGAAGGAGGTCGCCCGG
ATGTTCGTGCGACGAAGGCAGGCGTTGACCAAGCACGACTTCAACGTCAC
CTCGCCACCGCCGTTGCGATGTCCGCGTTTCGATTGCGACGCAACTTTCG
TGAACCCTGCCCACTACGTTCGTCATGCAGCGGACGTCCACCCGAAAGAC
GGCCCAGAAATCGCGGAGTTAGCCCTGTTGATGCATATACCTGTTGGACT
CGCGCTGCTCGAAAGATGGATCGGCACGGCCACCGCTGCCGGCGGCGAGA
GCGATGCGCACGCTGATCGGGAACAGACTGAGAAAGTATTGTTCACCAGC
GAGAAATGCAAAACCGTGGAAAACGCCTTTTTGGTGCTGTGGAAGACGAT
CGAGGATTGGAGGACGGCGCCGAGCTCTTCCGACGACTACCAGAGGCTGG
GTAGGTCTGTCTTGAGCAAAATTTCGTCGTCGTCGTCGATGATGGGCACA
ACGAATTCGAAGGGAAGCGATCGCCTTTCCGGCGAGGTCGCTGGCTCGGA
ACCAGTTGTGTTTTCTTTGGGTAGCAGCAGTCTGGGAACAACGAAACATA
AAAACGCCTCCGGCATCACCCACGGACTCCCGATGACGGAGTACACTCCA
AGTGAGGACGCCATCAACCCTTTGGCTTTCGAGGAGGCTAGTTGGCGAGC
CCTCGTGAGCTTGAACGGAGTGGCAGGGCGAGCGTTCCTGACGAGTACGC
CGTACGCAAAGTATCTCGACGAGATGGAGAGGCCGAGGAGGGAGGCCATC
GAGGCGAAGGCGGCCGACATCGCCAAACGAAAGCATGCTGAGTCGCTAGC
GGAGGCGCGAAAGCTTCGAGAAGAAGCGTTTCTTCGTGTGCAGGAGGGTA
TGGTCGATGAGTTGGCCGAGAAGGCGCTGACGCTGTTTCTGCGAGGGACT
GGGACTGCTGCTGCTTCGAGCTTTCTCGGAGACCTGGTGGAAGATCAGGC
GACACTCCTGTCCGTGGTCATAATCGCTGAGCGAAGCGTGTTCGCCAAGA
TAATATCGGCCGTGTGGAACGAGGCGGTGGACGAAGCCGCGACCGCAGAA
AGCGCGGCTCGCCGAGAGCACCGAGAAATCTCTCCCGCAATCGTCGACAC
TCTGTCCGAAGCAGCTTCCGCGGTGGTTCGCTCTCGAGTCATGGATCAGC
TCATCGACGACTGCATTCTGGATCTCACAGGGCCGCAAGGCGAACTTTGG
GCCGACGCGCGTGCGATGGTGGCCGTGGCGGACGGTGTGGGGTACCGCGT
GCGGTGTGACGTTATCGAATATATGTTGGAGGCGTCAATTGTCGAGCTTC
AGGAGTCTGGGGAAGCGGAGCAGCTGATGTCAGACGCGGAGCGAAAGAGG
GGGAGGGAGGCGGAGGCCGCAGTGAACGCGGCGAACGCGAGTGAGGCAGC
AGCAGCAGCAGCAGCAGCGATGGAGGAGGAGGACCTGTCTGAAGCAACCG
GCGAAGCGGCGACACTCCTGTCCGTGGTCATAATCGCTGAGCGAAGCGTG
TTCGCCAAGATAATATCGGCCGTGTGGAACGAGGCGGTGGACGAAGCCGC
GACCGCAGAAAGCGCGGCTCGCCGAGAGCACCGAGAAATCTCTCCCGCAA
TCGTCGACACTCTGTCCGAAGCAGCTTCCGCGGTGGTTCGCTCTCGAGTC
ATGGATCAGCTCATCGACGACTGCATTCTGGATCTCACAGGGCCGCAAGG
CGAACTTTGGGCCGACGCGCGTGCGATGGTGGCCGTGGCGGACGGTGTGG
GGTACCGCGTGCGGTGTGACGTTATCGAATATATGTTGGAGGCGTCAATT
GTCGAGCTTCAGGAGTCTGGGGAAGCGGAGCAGCTGATGTCAGACGCGGA
GCGAAAGAGGGGGAGGGAGGCGGAGGCCGCAGTGAACGCGGCGAACGCGA
GTGAGGCAGCAGCAGCAGCAGCAGCAGCGATGGAGGAGGAGGACCTGTCT
GAAGCAACCGGCGAAGCGGAAGAAACCGCCACCACCGCAGATGCTGCAGC
GACGGACGACAACTTATTGTCGCCCAGTGTAACGGGAGGGGGAAGAGGGG
CTCTCGGCTTGGACGAAAGATACGTCTTTACAACCGGGGACGACGAAGTA
GAAGAAAGCTTTCGCCAGGGGTGGGAAGGCGGTGGGACAAATGGTGCTAG
AAACTATGACACGTCGGCGGCAATAATATCAATTGCTCAAGAGGACGCGG
CAGTAGCGGCGCAATCGGCACCTACACCGTCCCCAGAGGATGCAGCGGTG
GTGGTGCAGTCGGCGTGGAGGCGCCAGATGGTGTACCGTGGGATGAGGAC
GTTGGTCGCGCAAAACTTCGTCAAACTGTACGACCCCGCCTACGGGGCCT
TCTACTGGTACAACCAGGCTACGGGAGAGTCCACCTGGGAAAAGCCGGCC
ATCATCGACGCTTACTTCAAGACTAACGCCTAAGAAGAAACCGCCACCAC
CGCAGATGCTGCAGCGACGGACGACAACTTATTGTCGCCCAGTGTAACGG
GAGGGGGAAGAGGGGCTCTCGGCTTGGACGAAAGATACGTCTTTACAACC
GGGGACGACGAAGTAGAAGAAAGCTTTCGCCAGGGGTGGGAAGGCGGTGG
GACAAATGGTGCTAGAAACTATGACACGTCGGCGGCAATAATATCAATTG
CTCAAGAGGACGCGGCAGTAGCGGCGCAATCGGCACCTACACCGTCCCCA
GAGGATGCAGCGGTGGTGGTGCAGTCGGCGTGGAGGCGCCAGATGGTGTA
CCGTGGGATGAGGACGTTGGTCGCGCAAAACTTCGTCAAACTGTACGACC
CCGCCTACGGGGCCTTCTACTGGTACAACCAGGCTACGGGAGAGTCCACC
TGGGAAAAGCCGGCCATCATCGACGCTTACTTCAAGACTAACGCCTAA
back to top