mRNA_M-pyrifera_M_contig109554.2006.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109554.2006.1
Unique NamemRNA_M-pyrifera_M_contig109554.2006.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: FKBP4_DICDI (FK506-binding protein 4 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=FKBP4_DICDI)

HSP 1 Score: 131 bits (329), Expect = 6.980e-34
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  103 ERTAVDGGKKPDGFQRIGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR--FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVELIDC 465
            E   V+  K       +  G+Q  DLV G G +PK G++V VKY+G+L +N K FDS+ R  FTFR+G+ EVI GWD+G+ASM+VGGKRRL IP   AYG  GAPP+IPPN+TL FDVEL+ C
Sbjct:  241 EAAVVEKKKPTSSVVTLPSGLQYEDLVVGSGPSPKSGKKVGVKYIGKL-TNGKTFDSSLRTPFTFRIGIREVIRGWDIGVASMKVGGKRRLTIPADLAYGRSGAPPSIPPNATLIFDVELVSC 362          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A8K0P9U5_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P9U5_LADFU)

HSP 1 Score: 122 bits (305), Expect = 5.400e-33
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 1
Query:  160 GVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR---FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVEL 456
            GV + DL  G G   K GR V V Y+GRL  N K FDS  +   F FRLG NEVI GWDLG+A M+VGGKR+++ PP  AYGS+G+PP IPPNSTL F+VEL
Sbjct:    9 GVAIEDLKIGNGPVAKPGRMVSVYYIGRLKQNNKSFDSTQQGPGFKFRLGSNEVIKGWDLGVAGMKVGGKRKIVCPPHMAYGSKGSPPVIPPNSTLVFEVEL 110          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A482SWP6_9ARCH (Peptidyl-prolyl cis-trans isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWP6_9ARCH)

HSP 1 Score: 122 bits (305), Expect = 1.510e-32
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  133 PDGFQRIGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR--FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVELID 462
            P    R+ +GV + D++ G G+  K G R+ V YVG+  +N +IFDS+ +  F FRLG  EVI GWD+G   M+VGGKR L IPP  AYG  GAPPTIPPNSTL F+V LID
Sbjct:   35 PSANTRVVQGVTIEDVIVGTGQQAKSGNRIKVNYVGKFKTNGRIFDSSTKKPFAFRLGGGEVIRGWDIGCDGMKVGGKRLLTIPPEKAYGRAGAPPTIPPNSTLVFEVTLID 146          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A0M3QYK7_DROBS (Peptidylprolyl isomerase n=1 Tax=Drosophila busckii TaxID=30019 RepID=A0A0M3QYK7_DROBS)

HSP 1 Score: 127 bits (319), Expect = 1.650e-32
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  130 KPDGFQR-IGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR---FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVEL 456
            KP G +R I  GV+V DL  G G   K+G+RV V Y+GRL SN K FDS  +   F F LG  EVI GWD+G+  M++GGKRR+  PP  AYG+RG+PPTIPPNSTL FDVEL
Sbjct:  236 KPTGGERVIAGGVRVQDLTVGNGPEAKQGKRVGVYYIGRLKSNNKTFDSMQKGAGFKFGLGAGEVIKGWDIGVVGMKIGGKRRITCPPHMAYGARGSPPTIPPNSTLVFDVEL 348          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A7S0UZ28_9CHLO (Peptidylprolyl isomerase n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UZ28_9CHLO)

HSP 1 Score: 123 bits (309), Expect = 9.490e-32
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  160 GVQVLDLVKGI--GKAPKRGRRVVVKYVGRLVSNKKIFD--SNDRFTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVELIDCK 468
            G Q  +L+ G   GK   +G RV V+YVG L SN K+FD  +   F+FRLG+ EVI GWD+G+  MRVG KRRL IPP+ AYGS GAPPTIPPN+TL FDVEL+D K
Sbjct:  164 GFQYEELIVGPANGKKANQGNRVSVRYVGSLKSNGKVFDRTTGKPFSFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPQMAYGSSGAPPTIPPNATLVFDVELVDVK 270          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: D8TH94_VOLCA (Peptidylprolyl isomerase (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TH94_VOLCA)

HSP 1 Score: 118 bits (295), Expect = 1.320e-31
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  193 GKAPKRGRRVVVKYVGRLVSNKKIFDSNDR--FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVELIDCK 468
            GK  K G++V+V+Y GRL SN K+FD + +  F FRLG+ EVI GWDLG+  MRVG KRRL+IPP+ AYG+ G   TIP NSTL+FDVEL+D K
Sbjct:   11 GKLAKPGQKVLVRYTGRLKSNGKVFDKSGQKPFQFRLGVGEVIKGWDLGVEGMRVGDKRRLVIPPQLAYGAAGVKGTIPSNSTLEFDVELVDVK 104          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A1A9YQ04_GLOFF (Peptidylprolyl isomerase n=1 Tax=Glossina fuscipes fuscipes TaxID=201502 RepID=A0A1A9YQ04_GLOFF)

HSP 1 Score: 122 bits (307), Expect = 1.600e-31
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  130 KPDGFQRIGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDS---NDRFTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVEL 456
            KP G + +  GV+V+DL  G G   K G+R  V Y GRL+SN K+FDS      F F LG  EVI GWD+GI  M+VGGKRR+  PP+ AYGSRG+PP IPPNSTL F+VEL
Sbjct:  150 KPGGERVLSGGVKVIDLRAGNGPEAKIGKRNQVYYEGRLLSNNKVFDSMKSGTGFKFTLGRGEVIKGWDIGIVGMKVGGKRRITCPPQMAYGSRGSPPIIPPNSTLVFEVEL 261          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A7W0GS37_9BACT (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7W0GS37_9BACT)

HSP 1 Score: 119 bits (297), Expect = 1.890e-31
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  160 GVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR---FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVELIDCK 468
            G++ +D+V+G G  PK+G+ V V Y G L + KK   S DR   F FR+G   VI GWD G+ASM+VGGKR+LIIPP   YG RG+PP IPPNS L FDVEL+  K
Sbjct:   35 GLKYVDMVEGTGATPKKGQTVTVHYTGTLENGKKFDSSVDRDQPFEFRIGEGAVIKGWDEGLASMKVGGKRKLIIPPALGYGVRGSPPNIPPNSILLFDVELLGAK 140          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: UPI00148E1CD3 (39 kDa FK506-binding nuclear protein n=1 Tax=Drosophila innubila TaxID=198719 RepID=UPI00148E1CD3)

HSP 1 Score: 124 bits (312), Expect = 1.930e-31
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  127 KKPDGFQRIGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR---FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVEL 456
            ++P G + I  GV+V D+  G G   K+G+RV V Y+GRL SN K FDS  +   F F LG  EVI GWD+G+A M+VGGKRR+  P   AYG+RG PPTIPPNSTL FDVEL
Sbjct:  241 QQPAGERTIAGGVKVQDMSAGNGPEAKQGKRVSVYYIGRLKSNNKTFDSMQKGNGFKFALGAGEVIKGWDVGVAGMKVGGKRRITCPAHMAYGARGHPPTIPPNSTLVFDVEL 353          
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Match: A0A6J1M6B1_DROHY (FK506-binding protein n=1 Tax=Drosophila hydei TaxID=7224 RepID=A0A6J1M6B1_DROHY)

HSP 1 Score: 124 bits (310), Expect = 3.990e-31
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:  100 KERTAVDGGKKPDGFQRIGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDR---FTFRLGLNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDVEL 456
            KE         P G + I  GV++ +L  G G   K+G+RV V Y+GRL ++ KIFDS  +   F F LG  EVI GWD+G+  M+VGGKRR+I PP  AYG+RG PPTIPP+STL FDVEL
Sbjct:  235 KEAKQTTAATAPGGERTIAGGVRIQELQVGNGPEAKQGKRVSVYYIGRLRNDNKIFDSMKKGNGFKFALGAGEVIKGWDVGVCGMKVGGKRRIICPPHMAYGARGQPPTIPPDSTLVFDVEL 356          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109554.2006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FKBP4_DICDI6.980e-3455.28FK506-binding protein 4 n=1 Tax=Dictyostelium disc... [more]
A0A8K0P9U5_LADFU5.400e-3359.80Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A482SWP6_9ARCH1.510e-3254.46Peptidyl-prolyl cis-trans isomerase n=1 Tax=archae... [more]
A0A0M3QYK7_DROBS1.650e-3258.41Peptidylprolyl isomerase n=1 Tax=Drosophila buscki... [more]
A0A7S0UZ28_9CHLO9.490e-3259.81Peptidylprolyl isomerase n=1 Tax=Polytomella parva... [more]
D8TH94_VOLCA1.320e-3160.64Peptidylprolyl isomerase (Fragment) n=1 Tax=Volvox... [more]
A0A1A9YQ04_GLOFF1.600e-3157.14Peptidylprolyl isomerase n=1 Tax=Glossina fuscipes... [more]
A0A7W0GS37_9BACT1.890e-3155.66Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pyrino... [more]
UPI00148E1CD31.930e-3156.6439 kDa FK506-binding nuclear protein n=1 Tax=Droso... [more]
A0A6J1M6B1_DROHY3.990e-3152.46FK506-binding protein n=1 Tax=Drosophila hydei Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109554contigM-pyrifera_M_contig109554:20..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog44689.DDB0233548
Preferred nameFPR3
KEGG koko:K14826,ko:K17478
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0000785,GO:0000792,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008144,GO:0008150,GO:0008152,GO:0009719,GO:0009725,GO:0009755,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010506,GO:0010507,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0016043,GO:0016241,GO:0016242,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030522,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032870,GO:0033043,GO:0033044,GO:0033313,GO:0034622,GO:0034728,GO:0035626,GO:0036211,GO:0040020,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070594,GO:0070887,GO:0071103,GO:0071310,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:1990837,GO:2000241,GO:2000242,GO:2001251
EggNOG free text desc.FKBP-type peptidyl-prolyl cis-trans isomerase
EggNOG OGs3XHWN@554915,COG0545@1,KOG0552@2759
EC5.2.1.8
COG Functional cat.B
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009,ko03110,ko04812
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.0697114-CDS-M-pyrifera_M_contig109554:19..4901622815606.0697114-CDS-M-pyrifera_M_contig109554:19..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109554 20..490 +
1692277484.2890182-CDS-M-pyrifera_M_contig109554:19..4901692277484.2890182-CDS-M-pyrifera_M_contig109554:19..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109554 20..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109554.2006.1prot_M-pyrifera_M_contig109554.2006.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109554 20..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109554.2006.1

>prot_M-pyrifera_M_contig109554.2006.1 ID=prot_M-pyrifera_M_contig109554.2006.1|Name=mRNA_M-pyrifera_M_contig109554.2006.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
EAELRALEAKANAKAKAKAKKEKKKAQKEARKEKERTAVDGGKKPDGFQR
IGKGVQVLDLVKGIGKAPKRGRRVVVKYVGRLVSNKKIFDSNDRFTFRLG
LNEVIAGWDLGIASMRVGGKRRLIIPPRAAYGSRGAPPTIPPNSTLQFDV
ELIDCK*
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mRNA from alignment at M-pyrifera_M_contig109554:20..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109554.2006.1 ID=mRNA_M-pyrifera_M_contig109554.2006.1|Name=mRNA_M-pyrifera_M_contig109554.2006.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig109554:20..490+ (Macrocystis pyrifera P11B4 male)
GAAGCAGAATTACGTGCATTGGAAGCAAAGGCAAATGCAAAGGCGAAGGC AAAGGCGAAGAAGGAGAAGAAGAAAGCACAAAAAGAAGCAAGGAAGGAAA AAGAGCGTACTGCTGTTGATGGTGGAAAGAAGCCAGATGGATTTCAACGC ATCGGAAAAGGAGTGCAAGTGCTAGACCTTGTGAAAGGAATCGGCAAAGC ACCCAAACGTGGCCGACGTGTTGTTGTGAAATATGTCGGGCGTCTTGTTT CAAACAAGAAGATTTTCGATTCCAATGATCGATTCACCTTCCGTCTTGGA CTCAATGAAGTGATTGCAGGTTGGGACCTTGGCATCGCATCCATGCGTGT CGGTGGGAAACGTCGACTTATCATTCCACCACGTGCTGCTTATGGCAGCC GAGGAGCACCTCCAACGATCCCACCAAACTCAACGTTGCAATTTGATGTT GAGCTTATTGATTGCAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109554:20..490+

>mRNA_M-pyrifera_M_contig109554.2006.1 ID=mRNA_M-pyrifera_M_contig109554.2006.1|Name=mRNA_M-pyrifera_M_contig109554.2006.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig109554:20..490+ (Macrocystis pyrifera P11B4 male)
GAAGCAGAATTACGTGCATTGGAAGCAAAGGCAAATGCAAAGGCGAAGGC
AAAGGCGAAGAAGGAGAAGAAGAAAGCACAAAAAGAAGCAAGGAAGGAAA
AAGAGCGTACTGCTGTTGATGGTGGAAAGAAGCCAGATGGATTTCAACGC
ATCGGAAAAGGAGTGCAAGTGCTAGACCTTGTGAAAGGAATCGGCAAAGC
ACCCAAACGTGGCCGACGTGTTGTTGTGAAATATGTCGGGCGTCTTGTTT
CAAACAAGAAGATTTTCGATTCCAATGATCGATTCACCTTCCGTCTTGGA
CTCAATGAAGTGATTGCAGGTTGGGACCTTGGCATCGCATCCATGCGTGT
CGGTGGGAAACGTCGACTTATCATTCCACCACGTGCTGCTTATGGCAGCC
GAGGAGCACCTCCAACGATCCCACCAAACTCAACGTTGCAATTTGATGTT
GAGCTTATTGATTGCAAGTAAGAAGCAGAATTACGTGCATTGGAAGCAAA
GGCAAATGCAAAGGCGAAGGCAAAGGCGAAGAAGGAGAAGAAGAAAGCAC
AAAAAGAAGCAAGGAAGGAAAAAGAGCGTACTGCTGTTGATGGTGGAAAG
AAGCCAGATGGATTTCAACGCATCGGAAAAGGAGTGCAAGTGCTAGACCT
TGTGAAAGGAATCGGCAAAGCACCCAAACGTGGCCGACGTGTTGTTGTGA
AATATGTCGGGCGTCTTGTTTCAAACAAGAAGATTTTCGATTCCAATGAT
CGATTCACCTTCCGTCTTGGACTCAATGAAGTGATTGCAGGTTGGGACCT
TGGCATCGCATCCATGCGTGTCGGTGGGAAACGTCGACTTATCATTCCAC
CACGTGCTGCTTATGGCAGCCGAGGAGCACCTCCAACGATCCCACCAAAC
TCAACGTTGCAATTTGATGTTGAGCTTATTGATTGCAAGTAA
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