mRNA_M-pyrifera_M_contig86044.20053.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86044.20053.1
Unique NamemRNA_M-pyrifera_M_contig86044.20053.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: L8GDE6_ACACA (Glucose repression mediator protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GDE6_ACACA)

HSP 1 Score: 145 bits (367), Expect = 1.210e-38
Identity = 66/76 (86.84%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            NHAKVLQQ+GWLYHHN Q+GNQDVAISYL RSI+ADP DGQTWYLLGRCYM  QKYRKAYDAYQQAV RD RNPTF
Sbjct:  226 NHAKVLQQVGWLYHHNPQFGNQDVAISYLMRSIEADPSDGQTWYLLGRCYMAQQKYRKAYDAYQQAVNRDNRNPTF 301
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BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: A0A7S4L1Y6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L1Y6_9EUKA)

HSP 1 Score: 139 bits (349), Expect = 1.990e-36
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 1 
Query:    4 HAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            HAKVLQQLGWLYHHN  +GNQDVAI YL RS+D+D  DGQTWYLLGRCYMT +KYRKAYDAYQQAVYRDG+NP F
Sbjct:   88 HAKVLQQLGWLYHHNTTFGNQDVAIGYLHRSLDSDASDGQTWYLLGRCYMTHRKYRKAYDAYQQAVYRDGQNPMF 162
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BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: F0ZMI5_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZMI5_DICPU)

HSP 1 Score: 139 bits (351), Expect = 4.500e-35
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            NHAKVLQQLGWLYHHN Q+ NQ++AIS L +SID+DP D Q+WYLLGRCYMT QKY+KAYDAYQQAVYRDGRNPTF
Sbjct:  284 NHAKVLQQLGWLYHHNPQFTNQEMAISSLLKSIDSDPSDAQSWYLLGRCYMTQQKYKKAYDAYQQAVYRDGRNPTF 359
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: A0A151ZSC4_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZSC4_9MYCE)

HSP 1 Score: 139 bits (351), Expect = 4.760e-35
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            NHAKVLQQLGWLYHHN Q+ NQ++AISYL+RSIDAD  D Q+WYLLGRCYM+ QK++KAYDAYQQAVYRDGRNPTF
Sbjct:  234 NHAKVLQQLGWLYHHNPQFPNQEMAISYLSRSIDADTSDAQSWYLLGRCYMSQQKHKKAYDAYQQAVYRDGRNPTF 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: D3BAH3_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAH3_POLPP)

HSP 1 Score: 136 bits (342), Expect = 7.830e-34
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            +HAKVLQQLGWLYHHN  + NQD AI +L +SIDADP D QTWYLLGRCYM  QKY+KAYDAYQQAVYRDGRNP+F
Sbjct:  217 SHAKVLQQLGWLYHHNPTFSNQDYAIGFLMKSIDADPSDAQTWYLLGRCYMIQQKYKKAYDAYQQAVYRDGRNPSF 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: CYC8_DICDI (General transcriptional corepressor trfA n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=CYC8_DICDI)

HSP 1 Score: 132 bits (332), Expect = 1.800e-32
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    4 HAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPT 225
            H+KVLQQLGWLYHHN  + NQ+ AI+YL RSID+D  D QTWYLLGRCYMT QKY+KAYDAYQQAVYRDGRNPT
Sbjct:  382 HSKVLQQLGWLYHHNPLFTNQEYAINYLMRSIDSDSSDAQTWYLLGRCYMTQQKYKKAYDAYQQAVYRDGRNPT 455
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: A0A6B2L5V7_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5V7_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 2.270e-32
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    4 HAKVLQQLGWLYHHNQ----QWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            HAKVLQQLGWLYHH+Q      GNQDVAI YL +SI+ DP DGQTWYLLGRCYM  Q ++KAYDAYQQAVYRDG NPTF
Sbjct:  198 HAKVLQQLGWLYHHHQYPPLDLGNQDVAIEYLLQSIEVDPLDGQTWYLLGRCYMQKQNFKKAYDAYQQAVYRDGSNPTF 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: A0A7S4I0A8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I0A8_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 2.940e-32
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYR 207
            NHAKVLQQLGWLYHHN  WG+QD AISYL RSI+AD  DGQTWYLLGRCYM  QKY KAYDAYQQAVYR
Sbjct:  244 NHAKVLQQLGWLYHHNPSWGDQDAAISYLMRSIEADSKDGQTWYLLGRCYMNQQKYHKAYDAYQQAVYR 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: A0A507DNQ9_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DNQ9_9FUNG)

HSP 1 Score: 129 bits (324), Expect = 3.760e-32
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHHN-QQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            NHAKVLQQLGWLYH     + NQ++AIS+LTRSI+AD  D QTWYLLGRCYM  QKY KAYDAYQQAVYRDGRNPTF
Sbjct:  242 NHAKVLQQLGWLYHQQPSNFSNQELAISFLTRSIEADQNDAQTWYLLGRCYMAQQKYSKAYDAYQQAVYRDGRNPTF 318
[Close]
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Match: A0A0L0HNQ8_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HNQ8_SPIPD)

HSP 1 Score: 129 bits (324), Expect = 2.070e-31
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 NHAKVLQQLGWLYHH-NQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCYMTLQKYRKAYDAYQQAVYRDGRNPTF 228
            NHAKVLQQLGWLYH  N  + NQ++AI YLTRS++AD  D QTWYLLGRCYM  QKY KAY+AYQQAVYRDGRNPTF
Sbjct:  229 NHAKVLQQLGWLYHQQNSSFSNQELAIQYLTRSLEADMNDAQTWYLLGRCYMAQQKYNKAYEAYQQAVYRDGRNPTF 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86044.20053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GDE6_ACACA1.210e-3886.84Glucose repression mediator protein (Fragment) n=1... [more]
A0A7S4L1Y6_9EUKA1.990e-3682.67Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
F0ZMI5_DICPU4.500e-3581.58Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
A0A151ZSC4_9MYCE4.760e-3581.58Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
D3BAH3_POLPP7.830e-3478.95Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
CYC8_DICDI1.800e-3279.73General transcriptional corepressor trfA n=1 Tax=D... [more]
A0A6B2L5V7_9EUKA2.270e-3275.95Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S4I0A8_9EUKA2.940e-3284.06Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A507DNQ9_9FUNG3.760e-3277.92Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
A0A0L0HNQ8_SPIPD2.070e-3176.62Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86044contigM-pyrifera_M_contig86044:3..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue2.1e-30
Seed eggNOG ortholog5786.XP_003288629.1
KEGG koko:K06665
KEGG Pathwayko04011,ko04111,map04011,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006342,GO:0006355,GO:0006357,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0034728,GO:0040029,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0090568,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs3X8IX@554915,COG0457@1,KOG1124@2759
COG Functional cat.K
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.904168-CDS-M-pyrifera_M_contig86044:2..5361622816770.904168-CDS-M-pyrifera_M_contig86044:2..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86044 3..536 +
1692278168.6242454-CDS-M-pyrifera_M_contig86044:2..5361692278168.6242454-CDS-M-pyrifera_M_contig86044:2..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86044 3..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86044.20053.1prot_M-pyrifera_M_contig86044.20053.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86044 3..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86044.20053.1

>prot_M-pyrifera_M_contig86044.20053.1 ID=prot_M-pyrifera_M_contig86044.20053.1|Name=mRNA_M-pyrifera_M_contig86044.20053.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
NHAKVLQQLGWLYHHNQQWGNQDVAISYLTRSIDADPGDGQTWYLLGRCY
MTLQKYRKAYDAYQQAVYRDGRNPTFWCSIGVLYYQINQYRDALDAYSRA
IQLNPFLSEVWYDLGTLYESCKQLSDSLDAYQRAAQLDPSNEHIQERLAV
LRASMSQGGSGGSNPDAAAAKPAPAEPQ
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mRNA from alignment at M-pyrifera_M_contig86044:3..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86044.20053.1 ID=mRNA_M-pyrifera_M_contig86044.20053.1|Name=mRNA_M-pyrifera_M_contig86044.20053.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig86044:3..536+ (Macrocystis pyrifera P11B4 male)
AACCACGCCAAGGTGCTCCAGCAGCTGGGCTGGCTCTACCACCACAACCA
GCAGTGGGGCAATCAGGACGTCGCGATCTCTTACCTCACGCGCTCGATCG
ATGCGGACCCCGGCGATGGCCAGACGTGGTACCTCCTCGGCCGGTGCTAC
ATGACCCTCCAGAAGTACCGCAAGGCGTACGATGCCTATCAGCAGGCGGT
CTACCGCGACGGCAGAAACCCGACCTTCTGGTGCTCGATTGGAGTGCTCT
ACTACCAGATCAACCAGTACCGCGACGCTCTCGACGCCTACAGCCGGGCC
ATCCAGCTGAACCCCTTCCTCAGTGAGGTCTGGTACGACCTCGGCACTCT
CTACGAGAGCTGCAAGCAGCTCTCCGACAGCCTCGACGCCTACCAGCGTG
CAGCCCAGCTGGACCCCAGCAACGAACACATCCAAGAGCGCCTGGCAGTC
CTCAGGGCCTCCATGAGCCAGGGCGGCTCTGGTGGTAGTAACCCTGACGC
TGCAGCTGCGAAGCCTGCGCCCGCAGAGCCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86044:3..536+

>mRNA_M-pyrifera_M_contig86044.20053.1 ID=mRNA_M-pyrifera_M_contig86044.20053.1|Name=mRNA_M-pyrifera_M_contig86044.20053.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig86044:3..536+ (Macrocystis pyrifera P11B4 male)
AACCACGCCAAGGTGCTCCAGCAGCTGGGCTGGCTCTACCACCACAACCA
GCAGTGGGGCAATCAGGACGTCGCGATCTCTTACCTCACGCGCTCGATCG
ATGCGGACCCCGGCGATGGCCAGACGTGGTACCTCCTCGGCCGGTGCTAC
ATGACCCTCCAGAAGTACCGCAAGGCGTACGATGCCTATCAGCAGGCGGT
CTACCGCGACGGCAGAAACCCGACCTTCTGGTGCTCGATTGGAGTGCTCT
ACTACCAGATCAACCAGTACCGCGACGCTCTCGACGCCTACAGCCGGGCC
ATCCAGCTGAACCCCTTCCTCAGTGAGGTCTGGTACGACCTCGGCACTCT
CTACGAGAGCTGCAAGCAGCTCTCCGACAGCCTCGACGCCTACCAGCGTG
CAGCCCAGCTGGACCCCAGCAACGAACACATCCAAGAGCGCCTGGCAGTC
CTCAGGGCCTCCATGAGCCAGGGCGGCTCTGGTGGTAGTAACCCTGACGC
TGCAGCTGCGAAGCCTGCGCCCGCAGAGCCCCAGAACCACGCCAAGGTGC
TCCAGCAGCTGGGCTGGCTCTACCACCACAACCAGCAGTGGGGCAATCAG
GACGTCGCGATCTCTTACCTCACGCGCTCGATCGATGCGGACCCCGGCGA
TGGCCAGACGTGGTACCTCCTCGGCCGGTGCTACATGACCCTCCAGAAGT
ACCGCAAGGCGTACGATGCCTATCAGCAGGCGGTCTACCGCGACGGCAGA
AACCCGACCTTCTGGTGCTCGATTGGAGTGCTCTACTACCAGATCAACCA
GTACCGCGACGCTCTCGACGCCTACAGCCGGGCCATCCAGCTGAACCCCT
TCCTCAGTGAGGTCTGGTACGACCTCGGCACTCTCTACGAGAGCTGCAAG
CAGCTCTCCGACAGCCTCGACGCCTACCAGCGTGCAGCCCAGCTGGACCC
CAGCAACGAACACATCCAAGAGCGCCTGGCAGTCCTCAGGGCCTCCATGA
GCCAGGGCGGCTCTGGTGGTAGTAACCCTGACGCTGCAGCTGCGAAGCCT
GCGCCCGCAGAGCCCCAG
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