mRNA_M-pyrifera_M_contig86043.20052.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86043.20052.1
Unique NamemRNA_M-pyrifera_M_contig86043.20052.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86043.20052.1 vs. uniprot
Match: A0A7S4MGE4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MGE4_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.490e-12
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   28 QLPEFELVSGHDGTILALFADSGYFDFEVPDYAAHVAFELHAPEEGP-----AHVEVLYNSTPIVFPGCQAEQCPLNEF 249
            Q P F L+SGHDGTIL LFA  G  + E+P+YAA VAFEL+  +E       + V   YN  P+  PGC  E+C L +F
Sbjct:  293 QTPNFILLSGHDGTILTLFAAMGITNHELPEYAASVAFELYEDQEAQNDSARSFVRAFYNFKPLALPGC-GEKCSLPQF 370
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BLAST of mRNA_M-pyrifera_M_contig86043.20052.1 vs. uniprot
Match: A0A5J4YS21_PORPP (Prostatic acid phosphatase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS21_PORPP)

HSP 1 Score: 52.4 bits (124), Expect = 7.330e-6
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   37 EFELVSGHDGTILALFADSGYFDFEVPDYAAHVAFELHAPEEGPAH-VEVLYNSTP 201
            EF L S HD TI+AL A  G+ D+ +P +AAHV FELH  E    + V + YN  P
Sbjct:  586 EFCLYSAHDNTIMALLAQLGFRDWPIPQFAAHVVFELHYEETLKDYFVRIAYNPDP 641
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BLAST of mRNA_M-pyrifera_M_contig86043.20052.1 vs. uniprot
Match: A0A7S0T6H1_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6H1_9RHOD)

HSP 1 Score: 51.6 bits (122), Expect = 1.150e-5
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:   37 EFELVSGHDGTILALFADSGYFDFEVPDYAAHVAFELHAPEEGPAH-VEVLYN 192
            EF L S HD TI+AL A  G+ D+ +P +AAH+ FELH       H V   YN
Sbjct:  224 EFALYSAHDNTIMALLAQLGFKDWPIPQFAAHIIFELHYDSSTKGHFVRFAYN 276
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86043.20052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4MGE4_9EUKA1.490e-1248.10Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A5J4YS21_PORPP7.330e-648.21Prostatic acid phosphatase n=1 Tax=Porphyridium pu... [more]
A0A7S0T6H1_9RHOD1.150e-547.17Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86043contigM-pyrifera_M_contig86043:418..731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score65.1
Seed ortholog evalue1.9e-08
Seed eggNOG ortholog81824.XP_001742356.1
Preferred nameKCS1
KEGG rclassRC00002
KEGG koko:K07756
KEGG ReactionR09087,R10548
KEGG Pathwayko04070,ko04138,map04070,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000827,GO:0000828,GO:0000829,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006109,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010675,GO:0010919,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019220,GO:0019222,GO:0019637,GO:0019751,GO:0023052,GO:0031323,GO:0031326,GO:0032958,GO:0033200,GO:0043255,GO:0043647,GO:0044237,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046165,GO:0046173,GO:0050789,GO:0050794,GO:0051174,GO:0062012,GO:0065007,GO:0071704,GO:0080090,GO:0090407,GO:1901576,GO:1901615,GO:1901617,GO:1902930
EggNOG free text desc.inositol phosphate biosynthetic process
EggNOG OGs38CF9@33154,KOG1620@1,KOG1620@2759,KOG3720@1,KOG3720@2759
EC2.7.4.21
COG Functional cat.IKT
BiGG ReactioniMM904.YDR017C
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.8601637-CDS-M-pyrifera_M_contig86043:417..5721622816770.8601637-CDS-M-pyrifera_M_contig86043:417..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86043 418..572 -
1692278168.6021972-CDS-M-pyrifera_M_contig86043:417..5721692278168.6021972-CDS-M-pyrifera_M_contig86043:417..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86043 418..572 -
1622816770.8733766-CDS-M-pyrifera_M_contig86043:622..7311622816770.8733766-CDS-M-pyrifera_M_contig86043:622..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86043 623..731 -
1692278168.6138878-CDS-M-pyrifera_M_contig86043:622..7311692278168.6138878-CDS-M-pyrifera_M_contig86043:622..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86043 623..731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86043.20052.1prot_M-pyrifera_M_contig86043.20052.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86043 418..731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86043.20052.1

>prot_M-pyrifera_M_contig86043.20052.1 ID=prot_M-pyrifera_M_contig86043.20052.1|Name=mRNA_M-pyrifera_M_contig86043.20052.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
FEAVLEGRLQLPEFELVSGHDGTILALFADSGYFDFEVPDYAAHVAFELH
APEEGPAHVEVLYNSTPIVFPGCQAEQCPLNEFSRFVH
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mRNA from alignment at M-pyrifera_M_contig86043:418..731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86043.20052.1 ID=mRNA_M-pyrifera_M_contig86043.20052.1|Name=mRNA_M-pyrifera_M_contig86043.20052.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=314bp|location=Sequence derived from alignment at M-pyrifera_M_contig86043:418..731- (Macrocystis pyrifera P11B4 male)
TTCGAGGCAGTGCTGGAGGGCAGGCTCCAGCTGCCGGAGTTCGAGCTTGT
GTCAGGCCACGACGGCACGATCCTGGCTCTTTTTGCTGACAGTGGATACT
TTGACTTTGGTGAGTGCCACACGGGGAGTGCAACGGACTACAACTGACCG
TTCGTCCAGAGGTCCCCGATTACGCAGCTCATGTCGCATTTGAACTCCAC
GCCCCCGAAGAAGGGCCCGCACACGTAGAAGTGCTCTACAATAGTACGCC
CATCGTTTTCCCTGGATGTCAGGCGGAGCAGTGTCCATTGAACGAGTTCT
CGAGGTTTGTCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86043:418..731-

>mRNA_M-pyrifera_M_contig86043.20052.1 ID=mRNA_M-pyrifera_M_contig86043.20052.1|Name=mRNA_M-pyrifera_M_contig86043.20052.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig86043:418..731- (Macrocystis pyrifera P11B4 male)
TTCGAGGCAGTGCTGGAGGGCAGGCTCCAGCTGCCGGAGTTCGAGCTTGT
GTCAGGCCACGACGGCACGATCCTGGCTCTTTTTGCTGACAGTGGATACT
TTGACTTTGTTCGAGGCAGTGCTGGAGGGCAGGCTCCAGCTGCCGGAGTT
CGAGCTTGTGTCAGGCCACGACGGCACGATCCTGGCTCTTTTTGCTGACA
GTGGATACTTTGACTTTGAGGTCCCCGATTACGCAGCTCATGTCGCATTT
GAACTCCACGCCCCCGAAGAAGGGCCCGCACACGTAGAAGTGCTCTACAA
TAGTACGCCCATCGTTTTCCCTGGATGTCAGGCGGAGCAGTGTCCATTGA
ACGAGTTCTCGAGGTTTGTCCACAGGTCCCCGATTACGCAGCTCATGTCG
CATTTGAACTCCACGCCCCCGAAGAAGGGCCCGCACACGTAGAAGTGCTC
TACAATAGTACGCCCATCGTTTTCCCTGGATGTCAGGCGGAGCAGTGTCC
ATTGAACGAGTTCTCGAGGTTTGTCCAC
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