mRNA_M-pyrifera_M_contig86041.20051.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86041.20051.1
Unique NamemRNA_M-pyrifera_M_contig86041.20051.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: A0A077ZNZ1_STYLE (DUF3342 domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZNZ1_STYLE)

HSP 1 Score: 126 bits (317), Expect = 2.430e-31
Identity = 60/124 (48.39%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   13 TTTFGSGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLTDRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQASVA 384
            TT++ + ++  VIHVCDE +K  +DF+C R +LL  M YF  YL D     D+DISVHCD+N+FDWL+RF H+ EP+         L ++ +VS+LISS FL+MA LVE+ V+FV ++LQ  +A
Sbjct:  191 TTSYNASNNQIVIHVCDENKKMNKDFKCDRNLLLNNMKYFEKYLADSKNLDDIDISVHCDINIFDWLMRFVHKKEPK---------LEIKNSVSILISSDFLQMAPLVEESVQFVTKNLQDIIA 305          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: S4RH33_PETMA (DUF3342 domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RH33_PETMA)

HSP 1 Score: 119 bits (297), Expect = 9.310e-29
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 AAPTTTTFGSGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLTDRAPS-SDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHL 369
            A P  +T   G  M VIHVCDEAR  +RDF C R++L++EM YFS YL+  A    +VDISVHCD ++FDWL+R+  RN  R A  G +P L     +S+LISS+FL+M  LVE+CVR+   H+
Sbjct:  125 AEPKKSTESQGPTM-VIHVCDEARGVKRDFSCPRQLLVQEMRYFSEYLSMEAQRWEEVDISVHCDAHIFDWLMRYVKRNT-RLADRGEQPQLEPNNVISILISSEFLKMDSLVEECVRYCHAHM 246          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: A0A7S3ZMG3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMG3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 9.440e-29
Identity = 61/112 (54.46%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   37 DMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLTDRAPSSDVDISVHCDVNVFDWLIRFAHR-NEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHL 369
            D+ VIHVCDEARK  RDF C R VLLREM YF SYL       D+DISVHCDV++F+WL+++ H  N+P        P L   + VS+LISS+FL MA LVE C++F+A H+
Sbjct:  119 DLIVIHVCDEARKVSRDFACDRVVLLREMRYFRSYLGGGDACEDIDISVHCDVHIFEWLVQWIHSPNKP--------PPLDASSVVSILISSEFLEMANLVEHCLKFMAAHV 222          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: J9IB09_9SPIT (DUF3342 domain containing protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IB09_9SPIT)

HSP 1 Score: 119 bits (298), Expect = 1.000e-28
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   28 SGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLTDRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQ 372
            + S+  VIHVCDE +K  +DF+C R +LL  M YF  YL D     D+DISVHCD+N+FDWL+++ H+ EP+         L ++ +VS+LISS FL+MA LVE+ V+FV ++LQ
Sbjct:  231 ANSNQIVIHVCDENKKMNKDFKCDRILLLNNMKYFEKYLADSKNLDDIDISVHCDINIFDWLMKYVHKKEPK---------LEIKNSVSILISSDFLQMAKLVEESVQFVVKNLQ 336          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: UPI001403F5C7 (uncharacterized protein KIAA1841 homolog isoform X1 n=3 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403F5C7)

HSP 1 Score: 119 bits (297), Expect = 1.350e-28
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 AAPTTTTFGSGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLTDRAPS-SDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHL 369
            A P  +T   G  M VIHVCDEAR  +RDF C R++L++EM YFS YL+  A    +VDISVHCD ++FDWL+R+  RN  R A  G +P L     +S+LISS+FL+M  LVE+CVR+   H+
Sbjct:  160 AEPKKSTESQGPTM-VIHVCDEARGVKRDFSCPRQLLVQEMRYFSEYLSMEAQRWEEVDISVHCDAHIFDWLMRYVKRNT-RLADRGEQPQLEPNNVISILISSEFLKMDSLVEECVRYCHAHM 281          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: UPI001EAF696A (SANT and BTB domain regulator of class switch recombination-like n=1 Tax=Oncorhynchus gorbuscha TaxID=8017 RepID=UPI001EAF696A)

HSP 1 Score: 115 bits (287), Expect = 1.430e-28
Identity = 56/121 (46.28%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   25 GSGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLT-DRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQASVA 384
            G G +M VIHVCDEA+  ++DF C R++L+ EM YF+ YL+ D     +VDISVHCDV +FDWL+ +  R++    G   +P L     +S+LISS+FL+M  LVE+C+++  +H+ A VA
Sbjct:   68 GKGPNM-VIHVCDEAKNLKQDFMCPRDLLINEMRYFAEYLSVDTQRWEEVDISVHCDVQIFDWLMNYVKRHKMAVDGNHDKPKLEPSNVISILISSEFLKMDTLVEECIQYCHKHMSAIVA 187          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: A0A060Y477_ONCMY (DUF3342 domain-containing protein n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A060Y477_ONCMY)

HSP 1 Score: 116 bits (291), Expect = 1.660e-28
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   25 GSGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLT-DRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQASVA 384
            G G +M VIHVCDEA+  ++DF C R++L+ EM YF+ YL+ D     +VDISVHCDV +FDWL+ +  R++  A G   +P L     +S+LISS+FL+M  LVE+C+++  +H+ A VA
Sbjct:  169 GKGPNM-VIHVCDEAKNLKQDFMCPRDLLINEMRYFAEYLSVDTQRWEEVDISVHCDVQIFDWLMNYVKRHKMAADGNHDKPKLEPSNVISILISSEFLKMDTLVEECIQYCHKHMSAIVA 288          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: A0A8C5CI66_GADMO (KIAA1841 ortholog n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5CI66_GADMO)

HSP 1 Score: 117 bits (293), Expect = 4.660e-28
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   34 SDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLT-DRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQASVA 384
            S   VIHVCDEA+  +RDF C R++L++EM YF+ YL+ D     +VDISVHCDV +FDWL+ +  RN P A G   +P L     +S+LISS+FL+M  LVE+C+++  +H+ A VA
Sbjct:  147 SPNMVIHVCDEAKNLKRDFTCARDLLVKEMRYFAEYLSVDSQRWEEVDISVHCDVQIFDWLMNYVRRNTP-AEGIREKPRLEPSNVISILISSEFLKMDTLVEECIQYCHKHMSAIVA 263          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: A0A8C4ZUP8_GADMO (KIAA1841 ortholog n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZUP8_GADMO)

HSP 1 Score: 117 bits (293), Expect = 4.700e-28
Identity = 58/118 (49.15%), Postives = 81/118 (68.64%), Query Frame = 1
Query:   34 SDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLT-DRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQASVA 384
            S   VIHVCDEA+  +RDF C R++L++EM YF+ YL+ D     +VDISVHCDV +FDWL+ +  RN P A G   +P L     +S+LISS+FL+M  LVE+C+++  +H+ A VA
Sbjct:  147 SPNMVIHVCDEAKNLKRDFTCARDLLVKEMRYFAEYLSVDSQRWEEVDISVHCDVQIFDWLMNYVRRNTP-AEGIREKPRLEPSNVISILISSEFLKMDTLVEECIQYCHKHMSAIVA 263          
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Match: UPI0015F788E7 (uncharacterized protein KIAA1841 homolog n=1 Tax=Oncorhynchus keta TaxID=8018 RepID=UPI0015F788E7)

HSP 1 Score: 111 bits (278), Expect = 4.980e-28
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   46 VIHVCDEARKARRDFRCRREVLLREMSYFSSYLT-DRAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVLISSQFLRMAVLVEQCVRFVAEHLQASVA 384
            VIHVCDEA+  ++DF C R++L+ EM YF+ YL+ D     +VDISVHCDV +FDWL+ +  R++    G   +P L     +S+LISS+FL+M  LVE+C+++  +H+ A VA
Sbjct:    2 VIHVCDEAKNLKQDFMCPRDLLINEMRYFAEYLSVDTQRWEEVDISVHCDVQIFDWLMNYVKRHKMAVDGNHDKPKLEPSNVISILISSEFLKMDTLVEECIQYCHKHMIAIVA 115          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86041.20051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A077ZNZ1_STYLE2.430e-3148.39DUF3342 domain-containing protein n=1 Tax=Stylonyc... [more]
S4RH33_PETMA9.310e-2950.81DUF3342 domain-containing protein n=1 Tax=Petromyz... [more]
A0A7S3ZMG3_9STRA9.440e-2954.46Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
J9IB09_9SPIT1.000e-2848.70DUF3342 domain containing protein n=2 Tax=Oxytrich... [more]
UPI001403F5C71.350e-2850.81uncharacterized protein KIAA1841 homolog isoform X... [more]
UPI001EAF696A1.430e-2846.28SANT and BTB domain regulator of class switch reco... [more]
A0A060Y477_ONCMY1.660e-2847.11DUF3342 domain-containing protein n=2 Tax=Oncorhyn... [more]
A0A8C5CI66_GADMO4.660e-2849.15KIAA1841 ortholog n=1 Tax=Gadus morhua TaxID=8049 ... [more]
A0A8C4ZUP8_GADMO4.700e-2849.15KIAA1841 ortholog n=2 Tax=Gadus morhua TaxID=8049 ... [more]
UPI0015F788E74.980e-2846.49uncharacterized protein KIAA1841 homolog n=1 Tax=O... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86041contigM-pyrifera_M_contig86041:44..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score115.2
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog7739.XP_002605134.1
Preferred nameKIAA1841
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3342)
EggNOG OGs28J1Y@1,2QRE4@2759,38CJC@33154,3BBN2@33208,3D13N@33213,487F1@7711
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.8203745-CDS-M-pyrifera_M_contig86041:43..4271622816770.8203745-CDS-M-pyrifera_M_contig86041:43..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86041 44..427 -
1692278168.5892346-CDS-M-pyrifera_M_contig86041:43..4271692278168.5892346-CDS-M-pyrifera_M_contig86041:43..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86041 44..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86041.20051.1prot_M-pyrifera_M_contig86041.20051.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86041 44..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86041.20051.1

>prot_M-pyrifera_M_contig86041.20051.1 ID=prot_M-pyrifera_M_contig86041.20051.1|Name=mRNA_M-pyrifera_M_contig86041.20051.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
AAPTTTTFGSGSDMTVIHVCDEARKARRDFRCRREVLLREMSYFSSYLTD
RAPSSDVDISVHCDVNVFDWLIRFAHRNEPRAAGGGREPALTVQTAVSVL
ISSQFLRMAVLVEQCVRFVAEHLQASVA
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mRNA from alignment at M-pyrifera_M_contig86041:44..427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86041.20051.1 ID=mRNA_M-pyrifera_M_contig86041.20051.1|Name=mRNA_M-pyrifera_M_contig86041.20051.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig86041:44..427- (Macrocystis pyrifera P11B4 male)
GCGGCGCCGACGACGACCACGTTCGGCAGCGGCAGCGACATGACTGTCAT CCACGTGTGCGACGAGGCGCGGAAGGCCCGGCGCGACTTTCGCTGCCGCC GCGAAGTGCTGCTGCGCGAAATGTCCTACTTCTCATCCTACCTCACGGAT CGAGCTCCGTCCAGCGACGTGGACATCAGCGTGCACTGCGACGTGAACGT GTTCGACTGGCTGATTCGCTTCGCCCACCGCAACGAGCCACGCGCGGCCG GAGGCGGCAGGGAGCCGGCCCTGACCGTGCAGACGGCAGTGTCTGTCCTC ATCTCCTCACAGTTCCTCCGCATGGCAGTGCTGGTGGAGCAGTGCGTGCG CTTCGTGGCCGAGCACCTGCAGGCAAGTGTGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86041:44..427-

>mRNA_M-pyrifera_M_contig86041.20051.1 ID=mRNA_M-pyrifera_M_contig86041.20051.1|Name=mRNA_M-pyrifera_M_contig86041.20051.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig86041:44..427- (Macrocystis pyrifera P11B4 male)
GCGGCGCCGACGACGACCACGTTCGGCAGCGGCAGCGACATGACTGTCAT
CCACGTGTGCGACGAGGCGCGGAAGGCCCGGCGCGACTTTCGCTGCCGCC
GCGAAGTGCTGCTGCGCGAAATGTCCTACTTCTCATCCTACCTCACGGAT
CGAGCTCCGTCCAGCGACGTGGACATCAGCGTGCACTGCGACGTGAACGT
GTTCGACTGGCTGATTCGCTTCGCCCACCGCAACGAGCCACGCGCGGCCG
GAGGCGGCAGGGAGCCGGCCCTGACCGTGCAGACGGCAGTGTCTGTCCTC
ATCTCCTCACAGTTCCTCCGCATGGCAGTGCTGGTGGAGCAGTGCGTGCG
CTTCGTGGCCGAGCACCTGCAGGCAAGTGTGGCAGCGGCGCCGACGACGA
CCACGTTCGGCAGCGGCAGCGACATGACTGTCATCCACGTGTGCGACGAG
GCGCGGAAGGCCCGGCGCGACTTTCGCTGCCGCCGCGAAGTGCTGCTGCG
CGAAATGTCCTACTTCTCATCCTACCTCACGGATCGAGCTCCGTCCAGCG
ACGTGGACATCAGCGTGCACTGCGACGTGAACGTGTTCGACTGGCTGATT
CGCTTCGCCCACCGCAACGAGCCACGCGCGGCCGGAGGCGGCAGGGAGCC
GGCCCTGACCGTGCAGACGGCAGTGTCTGTCCTCATCTCCTCACAGTTCC
TCCGCATGGCAGTGCTGGTGGAGCAGTGCGTGCGCTTCGTGGCCGAGCAC
CTGCAGGCAAGTGTGGCA
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