mRNA_M-pyrifera_M_contig86037.20047.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86037.20047.1
Unique NamemRNA_M-pyrifera_M_contig86037.20047.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86037.20047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86037contigM-pyrifera_M_contig86037:254..794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue9.4e-13
Seed eggNOG ortholog5786.XP_003291646.1
Preferred nameVAD1
KEGG koko:K12380
KEGG Pathwayko04013,ko04014,map04013,map04014
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
EggNOG free text desc.Domain of unknown function (DUF4782)
EggNOG OGs3X9GJ@554915,KOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86037.20047.1prot_M-pyrifera_M_contig86037.20047.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86037 254..794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.663859-CDS-M-pyrifera_M_contig86037:253..4551622816770.663859-CDS-M-pyrifera_M_contig86037:253..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86037 254..455 +
1692278168.5111244-CDS-M-pyrifera_M_contig86037:253..4551692278168.5111244-CDS-M-pyrifera_M_contig86037:253..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86037 254..455 +
1622816770.67691-CDS-M-pyrifera_M_contig86037:506..5821622816770.67691-CDS-M-pyrifera_M_contig86037:506..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86037 507..582 +
1692278168.522822-CDS-M-pyrifera_M_contig86037:506..5821692278168.522822-CDS-M-pyrifera_M_contig86037:506..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86037 507..582 +
1622816770.6901312-CDS-M-pyrifera_M_contig86037:634..7941622816770.6901312-CDS-M-pyrifera_M_contig86037:634..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86037 635..794 +
1692278168.5335116-CDS-M-pyrifera_M_contig86037:634..7941692278168.5335116-CDS-M-pyrifera_M_contig86037:634..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86037 635..794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86037.20047.1

>prot_M-pyrifera_M_contig86037.20047.1 ID=prot_M-pyrifera_M_contig86037.20047.1|Name=mRNA_M-pyrifera_M_contig86037.20047.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
DGYLTQTTLEELVHTTIAVSPEEFFVFTWSDKARPLLERYHEKRGDANLR
CDGWQDGAEWGHTQFATFETPVVTPLKTSSSRMDEKMRYHLTPERFLLEI
IGKLYTCPYADSFLVEQRFEVTSNGDGTSTLIISSALNFVKSTIFK
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mRNA from alignment at M-pyrifera_M_contig86037:254..794+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86037.20047.1 ID=mRNA_M-pyrifera_M_contig86037.20047.1|Name=mRNA_M-pyrifera_M_contig86037.20047.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=541bp|location=Sequence derived from alignment at M-pyrifera_M_contig86037:254..794+ (Macrocystis pyrifera P11B4 male)
GATGGATACCTCACTCAAACCACTTTGGAAGAGTTGGTTCACACAACTAT
CGCAGTATCACCAGAGGAATTCTTCGTGTTTACCTGGTCGGACAAGGCTA
GGCCACTGCTCGAGCGCTACCACGAGAAACGTGGCGACGCCAACCTTCGC
TGTGACGGGTGGCAAGATGGTGCAGAATGGGGCCATACGCAGTTTGCCAC
ATGTACGTTCCCATGGTCTTGCAGGGATCGACCAGTGAACTGACGCAGTG
TAGTTGAGACCCCTGTTGTCACGCCTCTCAAGACGTCTTCAAGTCGCATG
GATGAGAAAATGCGCTACCACCTCACACCGTATGCTCATCTTCACAAGCC
CTGCGCCGCAGTGTATCTAACAAGTATACAGGGAGAGGTTCCTCTTGGAA
ATCATTGGCAAGCTCTACACATGCCCGTACGCCGACTCTTTCCTGGTGGA
ACAGCGCTTCGAAGTCACAAGCAATGGTGACGGAACGAGCACTTTGATAA
TATCCTCTGCTCTAAATTTCGTCAAAAGCACCATCTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86037:254..794+

>mRNA_M-pyrifera_M_contig86037.20047.1 ID=mRNA_M-pyrifera_M_contig86037.20047.1|Name=mRNA_M-pyrifera_M_contig86037.20047.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig86037:254..794+ (Macrocystis pyrifera P11B4 male)
GATGGATACCTCACTCAAACCACTTTGGAAGAGTTGGTTCACACAACTAT
CGCAGTATCACCAGAGGAATTCTTCGTGTTTACCTGGTCGGACAAGGCTA
GGCCACTGCTCGAGCGCTACCACGAGAAACGTGGCGACGCCAACCTTCGC
TGTGACGGGTGGCAAGATGGTGCAGAATGGGGCCATACGCAGTTTGCCAC
ATGATGGATACCTCACTCAAACCACTTTGGAAGAGTTGGTTCACACAACT
ATCGCAGTATCACCAGAGGAATTCTTCGTGTTTACCTGGTCGGACAAGGC
TAGGCCACTGCTCGAGCGCTACCACGAGAAACGTGGCGACGCCAACCTTC
GCTGTGACGGGTGGCAAGATGGTGCAGAATGGGGCCATACGCAGTTTGCC
ACATTTGAGACCCCTGTTGTCACGCCTCTCAAGACGTCTTCAAGTCGCAT
GGATGAGAAAATGCGCTACCACCTCACACCTTGAGACCCCTGTTGTCACG
CCTCTCAAGACGTCTTCAAGTCGCATGGATGAGAAAATGCGCTACCACCT
CACACCGGAGAGGTTCCTCTTGGAAATCATTGGCAAGCTCTACACATGCC
CGTACGCCGACTCTTTCCTGGTGGAACAGCGCTTCGAAGTCACAAGCAAT
GGTGACGGAACGAGCACTTTGATAATATCCTCTGCTCTAAATTTCGTCAA
AAGCACCATCTTCAAGGGAGAGGTTCCTCTTGGAAATCATTGGCAAGCTC
TACACATGCCCGTACGCCGACTCTTTCCTGGTGGAACAGCGCTTCGAAGT
CACAAGCAATGGTGACGGAACGAGCACTTTGATAATATCCTCTGCTCTAA
ATTTCGTCAAAAGCACCATCTTCAAG
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