mRNA_M-pyrifera_M_contig8598.20037.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8598.20037.1
Unique NamemRNA_M-pyrifera_M_contig8598.20037.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8598.20037.1 vs. uniprot
Match: D8LD38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD38_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.860e-26
Identity = 76/218 (34.86%), Postives = 100/218 (45.87%), Query Frame = 1 
Query:    4 SVTGT-NLDVTFALSAESFWQLACSKEFYRSTRQQSKHVRQEVLELSDWTPLEG---STTTMEEEWPSGSGGGVTLPSPPRPTPETRLCYQHQQQDQQLLQREARLAYAISSPLGSSNAMVVQKQTLEVKDGGAIWYSEADCITGFPMVPGELNVKATYTVSPAE-GEDPGSVRVCVGVAVEDIGLPKFFSSVEPKVKNSVIKDVKKQAGRWLQEMTE 642
            S  GT  LD T  + A +FW+ A SK+FYRSTRQQS  VRQ+V++L+ W   +G     T +++    G GGG                                                             I Y+E+DCITGFPMVPG+L+VK T+ V+P E G     VRV VGV VE+I LPK    +  +V   V    +KQA +WL EM +
Sbjct:   39 STVGTIGLDTTLPMDAATFWRFAHSKDFYRSTRQQSAVVRQQVVDLTSWEQADGIDAEHTLLDDRHQKGGGGG------------------------------------------------------------GICYTESDCITGFPMVPGDLSVKTTFLVTPVEDGGHEERVRVRVGVVVEEIELPKRLRFLSKRVSKIVGNGGRKQAEKWLGEMVK 196
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BLAST of mRNA_M-pyrifera_M_contig8598.20037.1 vs. uniprot
Match: A0A6H5K1L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 8.490e-21
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 1 
Query:  268 QQQDQQLLQREARLAYAISSPLGSSNAMVVQKQTL-----EVKDGGAIWYSEADCITGFPMVPGELNVKATYTVSPAE-GEDPGSVRVCVGVAVEDIGLPKFFSSVEPKVKNSVIKDVKKQAGRWLQEMTE 642
            Q + Q LLQR A L YAI+SP  SS+A VVQ+ TL     +   GG I Y+E DCITGFPMVPG+L+VK T+ V+  + G     V V V V V++  LPK    +  +V + V    +KQA +WL EM +
Sbjct:   57 QPRPQLLLQRRATLNYAITSPFDSSDAKVVQEHTLLDDRHQEGGGGGICYTERDCITGFPMVPGDLSVKPTFLVTRVDDGGHTERVHVRVEVVVKETELPKRLRFLSKRVSDIVGDGGRKQAEKWLGEMVK 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8598.20037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD38_ECTSI2.860e-2634.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1L1_9PHAE8.490e-2145.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8598contigM-pyrifera_M_contig8598:4426..8114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000340.1
Exons2
Model size803
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8598.20037.1prot_M-pyrifera_M_contig8598.20037.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8598 7486..7980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.0930557-UTR-M-pyrifera_M_contig8598:4425..45511622816770.0930557-UTR-M-pyrifera_M_contig8598:4425..4551Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8598 4426..4551 +
1692278168.14765-UTR-M-pyrifera_M_contig8598:4425..45511692278168.14765-UTR-M-pyrifera_M_contig8598:4425..4551Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8598 4426..4551 +
1622816770.1071122-UTR-M-pyrifera_M_contig8598:7437..74851622816770.1071122-UTR-M-pyrifera_M_contig8598:7437..7485Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8598 7438..7485 +
1692278168.159582-UTR-M-pyrifera_M_contig8598:7437..74851692278168.159582-UTR-M-pyrifera_M_contig8598:7437..7485Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8598 7438..7485 +
1622816770.1307752-UTR-M-pyrifera_M_contig8598:7980..81141622816770.1307752-UTR-M-pyrifera_M_contig8598:7980..8114Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8598 7981..8114 +
1692278168.1897924-UTR-M-pyrifera_M_contig8598:7980..81141692278168.1897924-UTR-M-pyrifera_M_contig8598:7980..8114Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8598 7981..8114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.119446-CDS-M-pyrifera_M_contig8598:7485..79801622816770.119446-CDS-M-pyrifera_M_contig8598:7485..7980Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8598 7486..7980 +
1692278168.1792214-CDS-M-pyrifera_M_contig8598:7485..79801692278168.1792214-CDS-M-pyrifera_M_contig8598:7485..7980Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8598 7486..7980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8598.20037.1

>prot_M-pyrifera_M_contig8598.20037.1 ID=prot_M-pyrifera_M_contig8598.20037.1|Name=mRNA_M-pyrifera_M_contig8598.20037.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MEEEWPSGSGGGVTLPSPPRPTPETRLCYQHQQQDQQLLQREARLAYAIS
SPLGSSNAMVVQKQTLEVKDGGAIWYSEADCITGFPMVPGELNVKATYTV
SPAEGEDPGSVRVCVGVAVEDIGLPKFFSSVEPKVKNSVIKDVKKQAGRW
LQEMTEACMRGPSK*
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mRNA from alignment at M-pyrifera_M_contig8598:4426..8114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8598.20037.1 ID=mRNA_M-pyrifera_M_contig8598.20037.1|Name=mRNA_M-pyrifera_M_contig8598.20037.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3689bp|location=Sequence derived from alignment at M-pyrifera_M_contig8598:4426..8114+ (Macrocystis pyrifera P11B4 male)
TCGAGTGTCACTGGGACCAACCTGGACGTGACTTTTGCTCTCAGTGCCGA
GAGCTTCTGGCAATTGGCATGCTCCAAAGAATTTTATCGCAGCACTAGGC
AGCAGAGCAAGCACGTTCGCCAAGAGGTGCAGCACAGTATTCATAGTATT
GAATAGTAGTATTTGCAAAATATGATAAAACACTTCAGGTGTGTGATAGA
GGATTTCGTCGAAATCCTTTTTTGCAGCTACGTCCAATACCATTAATTAT
GATTTGTACTATTACGGGGGACCATAGTTAACAAGACCAAATATTGTTAG
TAAAAATATAGAAATATATGTTTGTTTGTGTGCATCGTAGGTCCTATTAA
CTATGGTCCCCCGTAATACTACTAATGCATTTAATATCCGACAAAGTGCA
GGCGGCATAAGATTCAACGTTCATCACTATGACAATAAGCATTCCCCGAA
ATATGCCATCAGTATAATGCATACACTGCGTGTATCCGTAGCCGCACCGA
CGCTTTCGTAAGCACAAGAAAACTTAGCCTGAGATTTCTGACGAAGTATG
AAAACCGGGAGCGGTTCGGTTACACAAGAGCCCCATTTCTCCGATAAGAA
ATATAGCCTGGGTTAGTATGTCAGTTCAATACCGGTTTCTTACTAGAGGA
CCAGTACCACAGTAGCACAGCAGTATACTGGTATACCTCACGGCTGATTA
TTCATGTCTTGACCCATGCCTTTACACTGTGCCTCTACAGTGTGGTGCCT
CTACAGTGTGGTGCCTCTACAGTGCGGTGCATCTACAGTGCTTTGCCGAT
ACATTGCTCTGCCTCTACACTGCGGTAGGAGGGGTGTACCTTTGGGCCGA
AATACTTGGTTGATCATTATTAGACTTGTCAACTGAGAAGGTTAATCCCT
CTTCCGCTGGCACCCTTCGCCACCAAATTGGGCGCTGTAAAAGGAACGCG
TTTGGTCTGATTTTTCGCGCCTGAGCTTAATGTCCTGGTCTAATTGAACG
ACTGCCGTGCGAAGGGAACAACGCCACTGACGCTCCCGTAGCCAGCGCTA
ATACAGCGAATCGAATGCCCTAACCAGTCAGCCAGCCAGCCAGCTAGCCT
GCACGTCAAACGACTCGTATTGTACCGTCATGGTTTACCAGGTCTACAAG
GTGTTGGGCATTTACCGCAGCCGTCGTAAGGTTTTTCCGTGTGCTAATTC
AAACAAGGCTGTATCACCTTGGACCTGTAGCGCTGGCTCTGTCCTCTGCT
ACGCTCACAGGGTAGCTGCTTTGAACGTATTCAAGGTGCTCCAGGCTATA
CTGGTACCCTTGTACCCTGCGTTGATCTGCTTGGCCTACTTCTTCCATGC
GTTCGAAGCCCATGTTTTCTCGTGTCTCGACAATATTATGTATTCTTCCG
TGCGCTAACATGTGCCATCAAATTTGTTTAGTTATTCTGTACCTCGCCGA
GGTGCGACAGAGTATGGCAGCGTGTGATCACCAAGCCGCTCCGGCGAGTC
GCCTCCCAAAGCCAATCCCGCTCCATTCCTCGCTCCCCTTATTGTGTAGA
GCTGGATCGACCTTGGGCCCAGCTTCGGCACAATTGTTTAAATACACACG
ACTTCAACCCCTTAAACCCCGCACGTACGCTTTTGGGGAAAACCAACTAC
TTGGAATTAGTAGGGTGTGTGTTGTCTTCACATTAAATCGTCCTTTCTAC
CCAGCTTCATTAGTACACCCAGTGTCCGTCCTGATTCCTTATCCTAGAGA
GCTACTGATTCCGTGGTCACAGACTGTGAGACAGAGGAAGACCAAAAATA
AAAATAAACAAATAAATAATCGCANNNNNNNNNNCAAGCAAGTGAAATGC
CAGCGTGCCGGGTACGAGAACACAACAACACAAGCAAGACCAAAAAAATA
AGAGCAAAAAGACAATAAAACTAAAAAAACAAAAAATTGGAATGAAAACA
GAATACAAACGACGCAAGGACTTCACAAAGTCTGCCAGACGGCAAGGGTG
TTCGGGACTATCCAATATGGTTAGGTTATGAAACATATTTGAAACCGACA
ACATGATGAGCAGATTGGTTGAACAGGGAAATCTCACGTTGCTTCGTTTG
CTAACCAACCCCTAGAGTTACCCTACCCAAGAATACATTGGGGTAAAAAA
GTCCTTTGGTCACTTTTTCCGACAGCAATTATATATTCGTAGGTTAGGAT
TGCTTTTATATAGGAAACAGACTACAAGAAACCCAACCCAACCAGATTCT
TCGCAAACGCCTTGGTGCGAAGTTTGGTTTTTGGAGTCCTAGAAGGGTTG
AACCCCAACCCTGACGCTAAACCTAACCCGGACCGCTGGGAATCTTCTTC
TAGTGAGGCGTTACTGTAGTGTGGACTACCCAACCATTGCGTCGAAGCTT
GGGCCAAGTCGTAACTGCTTGAGAAATTCGTCGGCATGAAGATGAACGAA
GGAAGAGTTTGTGTGGACCGACTACTAAGCTGTACCAATCATTTGGTTTT
TTTGGACCATCAACCATCGTGTCGAGACTGGGCCCAGTCGTAACCGCTCA
GGACATGTATCGGAATGAAAATGAAAATGAAGACTTGGTGTCGACATTCA
ACATTTCACACCACGGACAGACGATCGATTCCCCCTTCATGACGTGACTA
TTTCAAGGCAGACCTATCCCCGATCTTGTATGATCTACAATGGCTCGTGT
TGCCGGGAGGGACATATTATATGATCTACAGGAGTAGATCGTGCTGCCAG
GTGGGAGCCGTGCAATCTGCATGATCTACGAGTAGCACGTACATGTTTCC
TGTGTTGAATATGTACCATGCAGATCCTGCACAACCTCTCACAGCTACCG
GTGAGAAACTACACGATCTAGATGATCTAGATGATGTAGATCATGATCTG
TCTGATCTGTCTGATCTGTCTGATCTGCCTGATCTGCCCCAGGTGTGCAA
TCATTTTTTTAAAGCTGGTCCAAGTCGTAAACAGTACTGCCATTACTCTG
CCCCATTTTCAGGTACTGGAGCTCAGCGACTGGACGCCCCTGGAAGGGTC
CACCACAACGATGGAGGAAGAATGGCCCTCCGGAAGCGGGGGGGGGGTCA
CACTACCGTCCCCCCCGCGGCCGACGCCGGAGACGCGTTTGTGCTACCAG
CACCAGCAGCAGGATCAGCAGCTGCTGCAACGAGAAGCTCGGCTCGCATA
CGCGATTTCTTCCCCGCTTGGCTCGTCCAACGCGATGGTGGTACAGAAGC
AAACGCTGGAGGTTAAAGATGGAGGAGCAATATGGTACTCGGAGGCAGAC
TGCATCACGGGGTTTCCCATGGTACCCGGGGAACTGAACGTCAAGGCTAC
CTATACGGTATCGCCTGCGGAAGGGGAAGACCCGGGGTCCGTTCGCGTTT
GCGTGGGCGTTGCCGTCGAAGACATCGGCCTCCCTAAATTTTTCAGCTCA
GTTGAGCCGAAGGTGAAAAACAGTGTCATAAAGGACGTGAAGAAGCAGGC
AGGAAGATGGCTGCAGGAGATGACAGAGGCATGTATGAGAGGGCCTTCAA
AGTAGAACCGAGGCGTTTGTCCTACGCGCGGATGGGAGTTGTGTCAGGCG
ATGTGCGTAGGTACGATGTTTTTTTTTGTCTTATTTTGGGACCCCATGTA
TAGAGAGCGACAAAAAAACGACGAATGTGATGTTATCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8598:4426..8114+

>mRNA_M-pyrifera_M_contig8598.20037.1 ID=mRNA_M-pyrifera_M_contig8598.20037.1|Name=mRNA_M-pyrifera_M_contig8598.20037.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig8598:4426..8114+ (Macrocystis pyrifera P11B4 male)
ATGGAGGAAGAATGGCCCTCCGGAAGCGGGGGGGGGGTCACACTACCGTC
CCCCCCGCGGCCGACGCCGGAGACGCGTTTGTGCTACCAGCACCAGCAGC
AGGATCAGCAGCTGCTGCAACGAGAAGCTCGGCTCGCATACGCGATTTCT
TCCCCGCTTGGCTCGTCCAACGCGATGGTGGTACAGAAGCAAACGCTGGA
GGTTAAAGATGGAGGAGCAATATGGTACTCGGAGGCAGACTGCATCACGG
GGTTTCCCATGGTACCCGGGGAACTGAACGTCAAGGCTACCTATACGGTA
TCGCCTGCGGAAGGGGAAGACCCGGGGTCCGTTCGCGTTTGCGTGGGCGT
TGCCGTCGAAGACATCGGCCTCCCTAAATTTTTCAGCTCAGTTGAGCCGA
AGGTGAAAAACAGTGTCATAAAGGACGTGAAGAAGCAGGCAGGAAGATGG
CTGCAGGAGATGACAGAGGCATGTATGAGAGGGCCTTCAAAGTAGATGGA
GGAAGAATGGCCCTCCGGAAGCGGGGGGGGGGTCACACTACCGTCCCCCC
CGCGGCCGACGCCGGAGACGCGTTTGTGCTACCAGCACCAGCAGCAGGAT
CAGCAGCTGCTGCAACGAGAAGCTCGGCTCGCATACGCGATTTCTTCCCC
GCTTGGCTCGTCCAACGCGATGGTGGTACAGAAGCAAACGCTGGAGGTTA
AAGATGGAGGAGCAATATGGTACTCGGAGGCAGACTGCATCACGGGGTTT
CCCATGGTACCCGGGGAACTGAACGTCAAGGCTACCTATACGGTATCGCC
TGCGGAAGGGGAAGACCCGGGGTCCGTTCGCGTTTGCGTGGGCGTTGCCG
TCGAAGACATCGGCCTCCCTAAATTTTTCAGCTCAGTTGAGCCGAAGGTG
AAAAACAGTGTCATAAAGGACGTGAAGAAGCAGGCAGGAAGATGGCTGCA
GGAGATGACAGAGGCATGTATGAGAGGGCCTTCAAAGTAG
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