mRNA_M-pyrifera_M_contig85939.20033.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85939.20033.1
Unique NamemRNA_M-pyrifera_M_contig85939.20033.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: A0A3Q3B1L8_KRYMA (CYCLIN domain-containing protein n=2 Tax=Rivulidae TaxID=28771 RepID=A0A3Q3B1L8_KRYMA)

HSP 1 Score: 68.9 bits (167), Expect = 3.610e-12
Identity = 32/98 (32.65%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   40 RWVVTREELEASPSRLDGVSLDMEVEYAHKSCLLLDHLAE-LTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEESVVRIEVVAKVS 330
            +W+ TRE+L+A+PSR  G+  D E+ Y  ++  L+  + + L +++ + +TA+V +HRF+   S+++ +R++++    FLA K+EE   ++E V K++
Sbjct:   10 KWLFTREQLDATPSRRCGIEADRELSYRQQAANLIQDIGQRLNVSQLIINTAIVYMHRFYMIHSFTKFHRNIISQTTLFLAAKVEEQPRKLEHVIKIA 107          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: UPI0018ACB76D (cyclin-T2 n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=UPI0018ACB76D)

HSP 1 Score: 68.9 bits (167), Expect = 1.080e-11
Identity = 32/98 (32.65%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   40 RWVVTREELEASPSRLDGVSLDMEVEYAHKSCLLLDHLAE-LTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEESVVRIEVVAKVS 330
            +W+ TRE+L+A+PSR  G+  D E+ Y  ++  L+  + + L +++ + +TA+V +HRF+   S+++ +R++++    FLA K+EE   ++E V K++
Sbjct:   10 KWLFTREQLDATPSRRCGIEADRELSYRQQAANLIQDIGQRLNVSQLIINTAIVYMHRFYMIHSFTKFHRNIISQTTLFLAAKVEEQPRKLEHVIKIA 107          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: A0A813ZH03_9BILA (Hypothetical protein n=2 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZH03_9BILA)

HSP 1 Score: 69.7 bits (169), Expect = 1.290e-11
Identity = 34/90 (37.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   34 EHRWVVTREELEASPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYR--DLVASACFFLACKLEE 294
            E RW+ T+E+++ SPSR++G+S + E++   ++ L +  L  EL + +   +TA++ +HRFF   S+ + +R   +VA++C FLACK+EE
Sbjct:   64 ETRWIFTKEKIDNSPSRMEGLSAEQELKERQEAALFISDLGIELKVNQLCINTAIIYMHRFFMIHSFKKFHRYVRMVATSCLFLACKVEE 153          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: UPI00090122CF (cyclin-T1-3-like isoform X4 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI00090122CF)

HSP 1 Score: 68.9 bits (167), Expect = 2.370e-11
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 RWVVTREELEA-SPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEES 297
            RW  +REE+E  SPSR DG+  + E       C  L  L  EL   +   +TAM+L H+F+ RQS+++++  ++A+AC FLACK+EE+
Sbjct:   32 RWYFSREEIENHSPSRKDGIDYEKESGLRKLYCSFLQELGIELKGPQVTIATAMLLCHQFYMRQSHTKNHWQIIATACMFLACKVEET 119          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: UPI0009012BAE (cyclin-T1-3-like isoform X1 n=6 Tax=Ipomoea TaxID=4119 RepID=UPI0009012BAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.440e-11
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 RWVVTREELEA-SPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEES 297
            RW  +REE+E  SPSR DG+  + E       C  L  L  EL   +   +TAM+L H+F+ RQS+++++  ++A+AC FLACK+EE+
Sbjct:   32 RWYFSREEIENHSPSRKDGIDYEKESGLRKLYCSFLQELGIELKGPQVTIATAMLLCHQFYMRQSHTKNHWQIIATACMFLACKVEET 119          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: M5XN82_PRUPE (Uncharacterized protein n=8 Tax=Prunus TaxID=3754 RepID=M5XN82_PRUPE)

HSP 1 Score: 65.5 bits (158), Expect = 3.620e-10
Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   31 SEHRWVVTREELE-ASPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEES 297
            S  +W  TR+E+E  SPSR DG+SL  E +     C  L  +  +L +++   + AM+L HRF+ RQS++++   ++A+A FFLACK+ ++
Sbjct:   32 SMRKWYFTRQEIEDQSPSRRDGISLKKESQLRDSYCSFLQAIGMKLKVSQTTIACAMMLCHRFYMRQSHAKNGWQVIATASFFLACKVRDT 122          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: UPI000539BB1B (LOW QUALITY PROTEIN: cyclin-T1-2-like n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI000539BB1B)

HSP 1 Score: 65.5 bits (158), Expect = 3.850e-10
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   43 WVVTREELEA-SPSRLDGVSLDMEVEYAHKSCLLLDHLAE-LTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEESVVRIE 312
            W  TRE++E  SPSR DG+ L+ME    +  C  L++L E L L +   +TA V  HRFF RQS++++ R  +A+ C  LA K+ E+ V ++
Sbjct:   33 WXFTREDIETTSPSRRDGIDLNMENSLRNSYCSFLENLGERLKLPQVTIATATVFCHRFFIRQSHAKNDRWTIATVCMLLAGKVVETPVALK 124          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: A0A7J6EC76_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6EC76_CANSA)

HSP 1 Score: 64.7 bits (156), Expect = 7.070e-10
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   40 RWVVTREELEA-SPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEES 297
            RW  +R E+E  SPSR DGV L  E       C  L  L   L + +   +TA++  HRFF RQS++++ R  +A+AC FLA K+EE+
Sbjct:   43 RWYFSRREIEENSPSRHDGVDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFHRQSHAKNDRRTIATACMFLAGKVEET 130          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: A0A803Q2T9_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q2T9_CANSA)

HSP 1 Score: 64.7 bits (156), Expect = 7.370e-10
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   40 RWVVTREELEA-SPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEES 297
            RW  +R E+E  SPSR DGV L  E       C  L  L   L + +   +TA++  HRFF RQS++++ R  +A+AC FLA K+EE+
Sbjct:   32 RWYFSRREIEENSPSRHDGVDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFHRQSHAKNDRRTIATACMFLAGKVEET 119          
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Match: A9SUA9_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SUA9_PHYPA)

HSP 1 Score: 63.2 bits (152), Expect = 9.850e-10
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   40 RWVVTREELEA-SPSRLDGVSLDMEVEYAHKSCLLLDHLA-ELTLAKAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEES 297
            RW    EE+E  SPSRLDGV L  E  +  K  + L  L   L + +   +TA+V  HRFF RQS++++ R ++A+AC FLA K+EE+
Sbjct:    3 RW----EEIEKFSPSRLDGVDLKKETYFRKKYYIFLQDLGMRLKVPQVTIATAIVFCHRFFHRQSHAKNDRLIIATACMFLAGKVEET 86          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85939.20033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q3B1L8_KRYMA3.610e-1232.65CYCLIN domain-containing protein n=2 Tax=Rivulidae... [more]
UPI0018ACB76D1.080e-1132.65cyclin-T2 n=1 Tax=Kryptolebias marmoratus TaxID=37... [more]
A0A813ZH03_9BILA1.290e-1137.78Hypothetical protein n=2 Tax=Brachionus calyciflor... [more]
UPI00090122CF2.370e-1142.05cyclin-T1-3-like isoform X4 n=1 Tax=Ipomoea nil Ta... [more]
UPI0009012BAE2.440e-1142.05cyclin-T1-3-like isoform X1 n=6 Tax=Ipomoea TaxID=... [more]
M5XN82_PRUPE3.620e-1038.46Uncharacterized protein n=8 Tax=Prunus TaxID=3754 ... [more]
UPI000539BB1B3.850e-1041.30LOW QUALITY PROTEIN: cyclin-T1-2-like n=2 Tax=Came... [more]
A0A7J6EC76_CANSA7.070e-1042.05Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A803Q2T9_CANSA7.370e-1042.05Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
A9SUA9_PHYPA9.850e-1044.32Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85939contigM-pyrifera_M_contig85939:67..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.4
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog7955.ENSDARP00000027016
Preferred nameCCNT1
KEGG koko:K15188
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000307,GO:0001067,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005703,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008023,GO:0008024,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009301,GO:0009408,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016073,GO:0016301,GO:0016310,GO:0016538,GO:0016740,GO:0016772,GO:0016773,GO:0017069,GO:0018130,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019908,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031440,GO:0031441,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032774,GO:0032783,GO:0032806,GO:0032991,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035821,GO:0036211,GO:0042325,GO:0042327,GO:0042795,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050434,GO:0050684,GO:0050686,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051347,GO:0051702,GO:0051704,GO:0051726,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0097159,GO:0097322,GO:0097659,GO:0098687,GO:0098772,GO:0098781,GO:0140096,GO:1900363,GO:1900364,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903311,GO:1903312,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Belongs to the cyclin family
EggNOG OGs38BPJ@33154,3BBK6@33208,3CTUK@33213,485FF@7711,494HP@7742,49V9U@7898,COG5333@1,KOG0834@2759
COG Functional cat.D
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons3
Model size330
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85939.20033.1prot_M-pyrifera_M_contig85939.20033.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85939 67..630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.8101559-CDS-M-pyrifera_M_contig85939:66..1471622816769.8101559-CDS-M-pyrifera_M_contig85939:66..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85939 67..147 -
1692278167.9606812-CDS-M-pyrifera_M_contig85939:66..1471692278167.9606812-CDS-M-pyrifera_M_contig85939:66..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85939 67..147 -
1622816769.8232055-CDS-M-pyrifera_M_contig85939:291..3621622816769.8232055-CDS-M-pyrifera_M_contig85939:291..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85939 292..362 -
1692278167.9734674-CDS-M-pyrifera_M_contig85939:291..3621692278167.9734674-CDS-M-pyrifera_M_contig85939:291..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85939 292..362 -
1622816769.8357863-CDS-M-pyrifera_M_contig85939:473..6301622816769.8357863-CDS-M-pyrifera_M_contig85939:473..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85939 474..630 -
1692278167.9835832-CDS-M-pyrifera_M_contig85939:473..6301692278167.9835832-CDS-M-pyrifera_M_contig85939:473..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85939 474..630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.8484435-UTR-M-pyrifera_M_contig85939:630..6511622816769.8484435-UTR-M-pyrifera_M_contig85939:630..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85939 631..651 -
1692278167.993734-UTR-M-pyrifera_M_contig85939:630..6511692278167.993734-UTR-M-pyrifera_M_contig85939:630..651Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85939 631..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85939.20033.1

>prot_M-pyrifera_M_contig85939.20033.1 ID=prot_M-pyrifera_M_contig85939.20033.1|Name=mRNA_M-pyrifera_M_contig85939.20033.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MSVSEHRWVVTREELEASPSRLDGVSLDMEVEYAHKSCLLLDHLAELTLA
KAVASTAMVLLHRFFSRQSYSRHYRDLVASACFFLACKLEESVVRIEVVA
KVS
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mRNA from alignment at M-pyrifera_M_contig85939:67..651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85939.20033.1 ID=mRNA_M-pyrifera_M_contig85939.20033.1|Name=mRNA_M-pyrifera_M_contig85939.20033.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig85939:67..651- (Macrocystis pyrifera P11B4 male)
ATATCCTCCTCCTTCTACGCAATGTCTGTATCGGAGCATAGATGGGTGGT GACGAGAGAGGAGTTGGAAGCGTCTCCAAGTCGTTTGGACGGCGTTTCGT TGGACATGGAGGTGGAGTACGCTCACAAGTCATGTTTATTGCTTGACCAC CTTGCAGAACTTACGTTGGCGAAAGCAGGTCCAGAGTACGTGTTGTGGAA ATGGGTGAATTTGGGTGTTCATTCAGATTCACTTCCCTAACATCCCTTTC CCTCCTCTCTTACCATATCTTACAGAGTTGTTATGCGAGTTGCGTCTACT GCCATGGTACTTTTGCATCGATTCTTCTCGAGACAGTCCTATTCCAGGCA CTACAGAGACGTAAGAGGGGAATATTGAGGGAAATTGGGTTTGGGGTGGG AAATGGGGGGAGGTGGTGGTTGGGGTGTGTATTGTTTTGTGTCTCCATCC ACACCATTCTCCATCCACAATCATCTCTCCCCTCCCTCTGCTTATTTTCC TCAGTTGGTTGCCTCTGCGTGTTTTTTCTTGGCGTGTAAGTTGGAAGAGA GTGTTGTTCGGATCGAAGTGGTGGCCAAGGTGTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85939:67..651-

>mRNA_M-pyrifera_M_contig85939.20033.1 ID=mRNA_M-pyrifera_M_contig85939.20033.1|Name=mRNA_M-pyrifera_M_contig85939.20033.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig85939:67..651- (Macrocystis pyrifera P11B4 male)
ATGTCTGTATCGGAGCATAGATGGGTGGTGACGAGAGAGGAGTTGGAAGC
GTCTCCAAGTCGTTTGGACGGCGTTTCGTTGGACATGGAGGTGGAGTACG
CTCACAAGTCATGTTTATTGCTTGACCACCTTGCAGAACTTACGTTGGCG
AAAGCAGATGTCTGTATCGGAGCATAGATGGGTGGTGACGAGAGAGGAGT
TGGAAGCGTCTCCAAGTCGTTTGGACGGCGTTTCGTTGGACATGGAGGTG
GAGTACGCTCACAAGTCATGTTTATTGCTTGACCACCTTGCAGAACTTAC
GTTGGCGAAAGCAGTTGCGTCTACTGCCATGGTACTTTTGCATCGATTCT
TCTCGAGACAGTCCTATTCCAGGCACTACAGAGACTTGCGTCTACTGCCA
TGGTACTTTTGCATCGATTCTTCTCGAGACAGTCCTATTCCAGGCACTAC
AGAGACTTGGTTGCCTCTGCGTGTTTTTTCTTGGCGTGTAAGTTGGAAGA
GAGTGTTGTTCGGATCGAAGTGGTGGCCAAGGTGTCGTTGGTTGCCTCTG
CGTGTTTTTTCTTGGCGTGTAAGTTGGAAGAGAGTGTTGTTCGGATCGAA
GTGGTGGCCAAGGTGTCG
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