mRNA_M-pyrifera_M_contig85936.20031.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85936.20031.1
Unique NamemRNA_M-pyrifera_M_contig85936.20031.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85936.20031.1 vs. uniprot
Match: A0A7V8VAJ0_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8VAJ0_9BACT)

HSP 1 Score: 254 bits (650), Expect = 2.500e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 GQGRQVRCRSKHLVEYIGSGIMRSARGGRAYREDYDAGLPPRRYVPYTMRVRTSCGYYSFSCWISAKDCCMFIPFEDPIGEDGTPNRRFEFAEPIPGEAREMLQFLLSDLDMDNRLMEL 357
            GQGRQVRCRSKHLVEYIGSGIMRSARGGRAYREDYDAGLPPRRYVPYTMRVRTSCGYYSFSCWISAKDCCMFIPFEDPIGEDGTPNRRFEFAEPIPGEAREMLQFLLSDLDMDNRLMEL
Sbjct:   53 GQGRQVRCRSKHLVEYIGSGIMRSARGGRAYREDYDAGLPPRRYVPYTMRVRTSCGYYSFSCWISAKDCCMFIPFEDPIGEDGTPNRRFEFAEPIPGEAREMLQFLLSDLDMDNRLMEL 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85936.20031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7V8VAJ0_9BACT2.500e-85100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85936contigM-pyrifera_M_contig85936:95..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.742856-CDS-M-pyrifera_M_contig85936:94..4541622816769.742856-CDS-M-pyrifera_M_contig85936:94..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85936 95..454 -
1692278167.9320364-CDS-M-pyrifera_M_contig85936:94..4541692278167.9320364-CDS-M-pyrifera_M_contig85936:94..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85936 95..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85936.20031.1prot_M-pyrifera_M_contig85936.20031.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85936 95..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85936.20031.1

>prot_M-pyrifera_M_contig85936.20031.1 ID=prot_M-pyrifera_M_contig85936.20031.1|Name=mRNA_M-pyrifera_M_contig85936.20031.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
GQGRQVRCRSKHLVEYIGSGIMRSARGGRAYREDYDAGLPPRRYVPYTMR
VRTSCGYYSFSCWISAKDCCMFIPFEDPIGEDGTPNRRFEFAEPIPGEAR
EMLQFLLSDLDMDNRLMEL*
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mRNA from alignment at M-pyrifera_M_contig85936:95..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85936.20031.1 ID=mRNA_M-pyrifera_M_contig85936.20031.1|Name=mRNA_M-pyrifera_M_contig85936.20031.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig85936:95..454- (Macrocystis pyrifera P11B4 male)
GGCCAGGGGAGGCAAGTGAGGTGTAGAAGCAAGCACCTGGTTGAATACAT
TGGTAGTGGGATTATGCGATCTGCACGAGGAGGAAGGGCGTATCGCGAGG
ATTACGACGCTGGCCTGCCTCCCCGAAGGTATGTGCCATACACAATGCGT
GTCCGAACAAGTTGTGGCTACTATTCGTTTAGTTGTTGGATTTCTGCAAA
GGATTGCTGTATGTTTATTCCGTTTGAGGACCCAATCGGGGAAGACGGTA
CACCAAATCGTCGGTTTGAATTTGCTGAACCGATTCCAGGTGAAGCAAGG
GAGATGCTTCAGTTCTTGCTGAGTGATTTAGATATGGACAATAGGCTGAT
GGAGTTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85936:95..454-

>mRNA_M-pyrifera_M_contig85936.20031.1 ID=mRNA_M-pyrifera_M_contig85936.20031.1|Name=mRNA_M-pyrifera_M_contig85936.20031.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig85936:95..454- (Macrocystis pyrifera P11B4 male)
GGCCAGGGGAGGCAAGTGAGGTGTAGAAGCAAGCACCTGGTTGAATACAT
TGGTAGTGGGATTATGCGATCTGCACGAGGAGGAAGGGCGTATCGCGAGG
ATTACGACGCTGGCCTGCCTCCCCGAAGGTATGTGCCATACACAATGCGT
GTCCGAACAAGTTGTGGCTACTATTCGTTTAGTTGTTGGATTTCTGCAAA
GGATTGCTGTATGTTTATTCCGTTTGAGGACCCAATCGGGGAAGACGGTA
CACCAAATCGTCGGTTTGAATTTGCTGAACCGATTCCAGGTGAAGCAAGG
GAGATGCTTCAGTTCTTGCTGAGTGATTTAGATATGGACAATAGGCTGAT
GGAGTTGTAAGGCCAGGGGAGGCAAGTGAGGTGTAGAAGCAAGCACCTGG
TTGAATACATTGGTAGTGGGATTATGCGATCTGCACGAGGAGGAAGGGCG
TATCGCGAGGATTACGACGCTGGCCTGCCTCCCCGAAGGTATGTGCCATA
CACAATGCGTGTCCGAACAAGTTGTGGCTACTATTCGTTTAGTTGTTGGA
TTTCTGCAAAGGATTGCTGTATGTTTATTCCGTTTGAGGACCCAATCGGG
GAAGACGGTACACCAAATCGTCGGTTTGAATTTGCTGAACCGATTCCAGG
TGAAGCAAGGGAGATGCTTCAGTTCTTGCTGAGTGATTTAGATATGGACA
ATAGGCTGATGGAGTTGTAA
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