mRNA_M-pyrifera_M_contig109541.2003.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109541.2003.1
Unique NamemRNA_M-pyrifera_M_contig109541.2003.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109541.2003.1 vs. uniprot
Match: A0A7H5F1N2_9BACT (Aminotransferase n=2 Tax=Lewinella sp. W8 TaxID=2528208 RepID=A0A7H5F1N2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.010e-5
Identity = 34/102 (33.33%), Postives = 49/102 (48.04%), Query Frame = 1 
Query:    1 MSREQLGISERGRALMGPPMAYLADFFGSLGD--VWSEENEEGVIPLCVAENRVSYPLLEA---GMASVKTYEAHGGSYRDMKGGEAFRAAFAGLVEREVTG 291
            M   +  +S RGR     P+    D F    D     E+N EG +PLC+AEN +++  +EA   G+A+         SY  + G  AFR A AG V + + G
Sbjct:   10 MQSPESSLSRRGRRAASHPLRADFDLFAEAMDNHYHPEDNPEGCLPLCIAENLLNWEEMEAKLRGIAAAGPTPDWVASYTSILGAPAFREAVAGFVGKHIAG 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109541.2003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7H5F1N2_9BACT1.010e-533.33Aminotransferase n=2 Tax=Lewinella sp. W8 TaxID=25... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109541contigM-pyrifera_M_contig109541:308..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.9486618-CDS-M-pyrifera_M_contig109541:307..6011622815605.9486618-CDS-M-pyrifera_M_contig109541:307..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109541 308..601 +
1692277484.2502813-CDS-M-pyrifera_M_contig109541:307..6011692277484.2502813-CDS-M-pyrifera_M_contig109541:307..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109541 308..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109541.2003.1prot_M-pyrifera_M_contig109541.2003.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109541 308..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109541.2003.1

>prot_M-pyrifera_M_contig109541.2003.1 ID=prot_M-pyrifera_M_contig109541.2003.1|Name=mRNA_M-pyrifera_M_contig109541.2003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MSREQLGISERGRALMGPPMAYLADFFGSLGDVWSEENEEGVIPLCVAEN
RVSYPLLEAGMASVKTYEAHGGSYRDMKGGEAFRAAFAGLVEREVTGG
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mRNA from alignment at M-pyrifera_M_contig109541:308..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109541.2003.1 ID=mRNA_M-pyrifera_M_contig109541.2003.1|Name=mRNA_M-pyrifera_M_contig109541.2003.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig109541:308..601+ (Macrocystis pyrifera P11B4 male)
ATGTCACGCGAGCAGTTGGGTATTTCGGAGCGCGGTCGCGCATTGATGGG
TCCTCCGATGGCGTATTTGGCTGATTTTTTCGGGAGTTTGGGTGACGTGT
GGAGCGAGGAGAACGAAGAGGGCGTGATTCCGCTGTGTGTCGCGGAGAAT
CGGGTGTCGTACCCGCTGCTGGAGGCGGGGATGGCTTCGGTGAAGACGTA
CGAGGCACACGGGGGCAGCTACCGGGACATGAAGGGCGGAGAGGCATTTC
GCGCTGCGTTTGCGGGCCTGGTGGAGCGGGAGGTGACAGGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109541:308..601+

>mRNA_M-pyrifera_M_contig109541.2003.1 ID=mRNA_M-pyrifera_M_contig109541.2003.1|Name=mRNA_M-pyrifera_M_contig109541.2003.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig109541:308..601+ (Macrocystis pyrifera P11B4 male)
ATGTCACGCGAGCAGTTGGGTATTTCGGAGCGCGGTCGCGCATTGATGGG
TCCTCCGATGGCGTATTTGGCTGATTTTTTCGGGAGTTTGGGTGACGTGT
GGAGCGAGGAGAACGAAGAGGGCGTGATTCCGCTGTGTGTCGCGGAGAAT
CGGGTGTCGTACCCGCTGCTGGAGGCGGGGATGGCTTCGGTGAAGACGTA
CGAGGCACACGGGGGCAGCTACCGGGACATGAAGGGCGGAGAGGCATTTC
GCGCTGCGTTTGCGGGCCTGGTGGAGCGGGAGGTGACAGGAGGGATGTCA
CGCGAGCAGTTGGGTATTTCGGAGCGCGGTCGCGCATTGATGGGTCCTCC
GATGGCGTATTTGGCTGATTTTTTCGGGAGTTTGGGTGACGTGTGGAGCG
AGGAGAACGAAGAGGGCGTGATTCCGCTGTGTGTCGCGGAGAATCGGGTG
TCGTACCCGCTGCTGGAGGCGGGGATGGCTTCGGTGAAGACGTACGAGGC
ACACGGGGGCAGCTACCGGGACATGAAGGGCGGAGAGGCATTTCGCGCTG
CGTTTGCGGGCCTGGTGGAGCGGGAGGTGACAGGAGGG
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