mRNA_M-pyrifera_M_contig85923.20028.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85923.20028.1
Unique NamemRNA_M-pyrifera_M_contig85923.20028.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A2V4WX90_9FLAO (Gliding motility-associated-like protein n=1 Tax=Winogradskyella epiphytica TaxID=262005 RepID=A0A2V4WX90_9FLAO)

HSP 1 Score: 151 bits (382), Expect = 1.290e-37
Identity = 111/285 (38.95%), Postives = 154/285 (54.04%), Query Frame = 1
Query:    1 DPVNTGAPSATDSCSGLDIITFADSLPSGTTCSNSFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCSSVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDA-ISGNGCNQLITR 852
            DP NTG  +ATD+CS + +I++ DS       + S  R W ATD C N  T+ Q I      PPVLTIPAD T+ECD+S  D   TG ASAT  C + T++      S+ G T +  RT++ TD CG T    Q I+  D +AP+  + PD  T++C  E     + P  TG   A D C +  ++T+ D  T   C +   I RTW  +D+CGN  S  Q I I +   P + AP N +++C  S +PS TGEAT    C   +T T++D+ +   G  Q+ITR
Sbjct:  796 DPPNTGTATATDTCSSV-VISYEDSALIECGVTESIIRTWTATDACGNSTTATQTIFVA-ANPPVLTIPADTTLECDDS-TDPSNTGEASATAQCGNATITYQDSLDSACGNTGVITRTWVVTDDCGNTVSGDQIITIEDTKAPTL-SIPDNKTIECGEE-----IDPTNTGLATATDTCGDV-TVTYLD-STTATCGNTESIIRTWTATDACGNTVSAEQVIRIEDTTPPILTAPANETVECGTSIEPSVTGEATAMDTCGD-VTITYTDSSVEACGDTQVITR 1068          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A1V4V1Y0_9EURY (HYR domain protein n=1 Tax=Methanosaeta sp. PtaB.Bin039 TaxID=1811685 RepID=A0A1V4V1Y0_9EURY)

HSP 1 Score: 150 bits (379), Expect = 3.300e-37
Identity = 111/286 (38.81%), Postives = 151/286 (52.80%), Query Frame = 1
Query:    4 PVNTGAPSATDSCSGLDIITFADSLPSGTTCSN--SFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDES--PNDTGLTGVASATDDCSS---VTVSDSVFFVSSIGCTDLFA--RTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAISGNGC 834
            P NTG  +ATD+C     +T++D +  GT C +  S +R W A D C N  T  Q I+  D T PV+  P+DVTI C +S  P +TG    A+ATD+C +   +T SD   FV+   C D ++  RT+ A D CG     TQ I+  D   P     P   T+ C+  S      P  TG   A DNCD   ++T+SD  T   CPD   I RTW   D+CGN  +  Q I +V+   P +V P +++I CS SS P NTG AT +  CD ++  T+SD I+   C
Sbjct:  577 PENTGFATATDNCDASVNVTYSDQITPGT-CPDQRSISRTWRAEDNCGNVATCTQTITVVDTTLPVIVCPSDVTISCSDSHLPENTGF---ATATDNCDTSVNITYSD---FVTPGSCPDQWSISRTWRAEDNCGNVATCTQTITVVDTTLPVIV-CPSDVTISCSDSS-----QPENTGFATATDNCDASVNVTYSDEITPGSCPDQRTIARTWRAEDNCGNVATCTQTITVVDTTLPVIVCPSDVTISCSDSSLPENTGFATATDNCDASVNITYSDEITPGSC 849          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: UPI0005C9DEF2 (hypothetical protein n=1 Tax=Lacinutrix sp. Hel_I_90 TaxID=1249999 RepID=UPI0005C9DEF2)

HSP 1 Score: 142 bits (357), Expect = 2.770e-34
Identity = 102/281 (36.30%), Postives = 147/281 (52.31%), Query Frame = 1
Query:   34 DSCSGLDIITFADSLPSGTTCSNS--FTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTG-VASATDDCSSV---TVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSAS-SDPSNTGEATVSGV-CDPALTATFSDAISGNGCNQLITR 852
            D+C      T++D+  +G+ C+N+   TR W  TD C+N  T++Q I+  D T P  T+PAD+TI C++ P+D  LTG V +  D+C +    T SDS    ++  C  +  RT+  +D C  T  A Q I+  D  APSF   P   T+ C  +    S++  +T E D   NCD     T+SD      C +   I RTW ++D C N  + VQ I I +   PS   P +I+I+C    SD S TG+ T     CD  L AT+SD+ + N C  +ITR
Sbjct:  904 DNCDTTLEATYSDATAAGS-CANASVITRTWTLTDDCNNTTTAVQTITIEDTTAPSFTVPADITINCEQDPSDLSLTGDVTTEADNCDTTLEATYSDST---ANNACASVITRTWTLSDDCNNTTTAVQTITIEDTTAPSF-TVPADITINCEQDPTDLSLTGDVTTEAD---NCDTTLEATYSDATAAGSCANASVITRTWTLTDDCNNTTTAVQTITIEDTTAPSFTVPADITINCEQDPSDLSLTGDVTTEADNCDTTLEATYSDSTANNACASVITR 1176          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: UPI00157ADDEF (SprB repeat-containing protein n=1 Tax=Psychroserpens damuponensis TaxID=943936 RepID=UPI00157ADDEF)

HSP 1 Score: 140 bits (352), Expect = 1.020e-33
Identity = 108/285 (37.89%), Postives = 156/285 (54.74%), Query Frame = 1
Query:    4 PVNTGAPSATDSCSGLDIITFADSLPS-GTTCSNSFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCSSVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAISGN-GCNQLITR 852
            P  TG  + +D+C  + I  + +S+   G+T   +  R W ATD C N  ++ QII   D T P L IP D+TIEC  S N +  TG A A D C +VT+S +   ++  G +++  RT+ ATD CG T  + Q I+  D  AP+  N P  ATV+CT     AS +P+ TG     DNC    +I++SD      C +   I RTWV +D CGN  +  Q I I +   PS+  P++I+++C  S DPS TG AT S  C  A+  +++D  + N G ++ ITR
Sbjct:  584 PSATGTATGSDNCGEVTISYYDNSVVECGST--QTIKREWTATDNCGNTTSANQIIIIEDTTAPTLIIPNDITIECSNSTNPSN-TGNAQANDTCGNVTMSYNDVSIAYCGSSEIITRTWTATDDCGNTMSSNQTITIEDKTAPTL-NIPADATVECT-----ASYNPSETGNATGTDNCGSV-NISYSDTSDTG-CGNSETITRTWVATDECGNTTALDQIITIEDNIAPSLNIPNDITVECGDSIDPSTTGTATGSDNCG-AVAISYTDTANTNCGNSETITR 856          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A5C5VTS7_9BACT (HYR domain protein n=1 Tax=Phycisphaerae bacterium RAS1 TaxID=2528034 RepID=A0A5C5VTS7_9BACT)

HSP 1 Score: 139 bits (350), Expect = 2.110e-33
Identity = 106/290 (36.55%), Postives = 149/290 (51.38%), Query Frame = 1
Query:    1 DPVNTGAPSATDSCSGLDIITFADSLPSGTTCSNS-FTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCS---SVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAISGNGC--NQLITR 852
            DP NTG  +A D C     +T+AD++  G+    S  TR W ATD C N  ++ Q+I+  +   PVLT+PADV++ C  S  D   TG A+AT  C    ++T SDS     S     +  RT+  TD CG T  A Q I   D  AP+    P  A V C   S      PA TG   A D+C E  ++++ DV     C     I R+W+ +D+CGN  S VQ I + +   P +  P ++ ++C  S++PS TGEATVS  C P  T    D+ +   C  +++ITR
Sbjct:  663 DPTNTGFATAADLCDAAPELTYADAVTPGSCPGESTITRTWTATDDCGNAASATQVIAVGNDATPVLTVPADVSVGCLAS-TDPSATGAATATTPCDPNPTITYSDSTV-AGSCTAESVITRTWTVTDGCGNTTSAMQTIHVVDEAAPTITP-PTNADVGCDEPSD-----PAATGFATASDDCGEA-TVSYQDVILPGACDASYSIIRSWIATDACGNSASTVQFIFVSDTAAPIISVPADVIVECGDSTEPSATGEATVSDGCSPIATLGHIDSEAPGACAGSRIITR 943          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A7K3WW99_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Cryomorpha ignava TaxID=101383 RepID=A0A7K3WW99_9FLAO)

HSP 1 Score: 139 bits (350), Expect = 2.110e-33
Identity = 103/273 (37.73%), Postives = 150/273 (54.95%), Query Frame = 1
Query:    1 DPVNTGAPSATDSCSGLDIITFADSLPSGTTCSNSFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCSSVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAI 819
            DP  TG P+ATD CS + + T+ D    G  C  SF R W A D C+N  T +QII+  D   P ++ PAD+T+ C  S      TG+A ATD C  V+++     VS   C+  F RT+IATD+CG      Q IS  DN  P      DT  + C +++     SP   G   A+D C++  S+ +SDV+  + CP    I RTW  +D+CGN  S VQ I+      P ++ P++I++ C AS+DPS+TG  + +G C   ++ ++SD+I
Sbjct:  720 DPEFTGTPTATDECSSVSL-TYTDGAMYGN-CPMSFVRTWKAADACNNLATCIQIITVIDEEAPTISCPADITVSCAYSDAKPIHTGMAIATDQCLDVSLTYEDGEVSGT-CSPTFIRTWIATDYCGNVATCNQQISFFDNMLPVVFCPADTL-ISCGTDT-----SPESLGMATAVDFCNDV-SVDYSDVDFFDACP--ASILRTWTATDACGNARSCVQTIEFEEGGLPQILCPEDITVACDASTDPSSTGFPSGAGSCSE-ISISYSDSI 979          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A4Q9RQ85_9FLAO (Gliding motility-associated C-terminal domain-containing protein (Fragment) n=1 Tax=Meridianimaribacter sp. CL38 TaxID=2213021 RepID=A0A4Q9RQ85_9FLAO)

HSP 1 Score: 137 bits (346), Expect = 6.960e-33
Identity = 106/285 (37.19%), Postives = 154/285 (54.04%), Query Frame = 1
Query:   34 DSC-SGLDIITFADSLPSGTTCSNS-FTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTG-VASATDDCSS---VTVSDSVFFVSSIGCTD--LFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSA-SSDPSNTGEAT-VSGVCDPALTATFSDAISGNGC--NQLITR 852
            D+C SGL+  T++D++  G   + S  TR W  TD C N  T +Q I+  D T P  T+PADVTIECD+  ND  LTG V    D+C S    T SD+V   +   C +  +  RT+  TD CG T    Q I+  D  AP+F   P   T++C  ++   +++  +T E D   NCD     T+SD   +  C +   I RTW V+D CGN  + VQ I+IV+   P+   P +++I+C   ++D + TG+ T  +  CD  L AT+SDA++   C    +ITR
Sbjct:   39 DNCDSGLEA-TYSDAVADGNCANESVITRTWSLTDDCGNTATLVQTINVVDTTAPTFTVPADVTIECDQDANDLTLTGDVTDEADNCDSGLEATYSDAV---ADGNCANESVITRTWSLTDDCGNTATLVQTINVVDTTAPTF-TVPADVTIECDQDANDLTLTGDVTDEAD---NCDSGLEATYSDAVADGNCANESVITRTWSVTDDCGNTATLVQTINIVDTTAPTFTVPADVTIECDQDANDLTLTGDVTDEADNCDSGLEATYSDAVADGNCANESVITR 315          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A2N1PBI5_9BACT (Uncharacterized protein n=1 Tax=candidate division Zixibacteria bacterium HGW-Zixibacteria-1 TaxID=2013855 RepID=A0A2N1PBI5_9BACT)

HSP 1 Score: 136 bits (343), Expect = 1.940e-32
Identity = 98/267 (36.70%), Postives = 139/267 (52.06%), Query Frame = 1
Query:   58 ITFADSLPSGTTC--SNSFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCSSVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQE-IDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAISGNGCNQLIT 849
            IT+ DS  +G+ C    + TR W ATD   +  +  Q+I+  D T PV+T PADVTIECDES   +  TG+A+A D+C S          S +       RT+ ATD CG +    Q I+  D   P   + P   T+QC   S      P+ TG+  + DNCD  P +T+SD ET   CP    I RTW+ +D+ GN  +  Q+ I IV+   P++  P ++ ++C   +DP +TG AT    CDP+   TFSD  +     +L T
Sbjct: 1034 ITYTDSETAGS-CPQEKTITRTWTATDAGGSGSSCQQVITVVDDTAPVITCPADVTIECDESIEPSN-TGMATAVDNCDSAPA----LTYSDVDNGGNIVRTWTATDACGNSSSCQQLINFEDTTPPVLVSCPPDMTIQCDQSSA-----PSSTGQATSEDNCDPNPVVTYSDSETPGDCPQEKTISRTWIATDADGNSATICQQTITIVDTTPPAITCPASVEVECGQPNDPDHTGYATAVDNCDPSPIITFSDTRNNGVTTRLWT 1289          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: A0A2V2S6A0_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V2S6A0_9BACT)

HSP 1 Score: 136 bits (343), Expect = 1.980e-32
Identity = 103/285 (36.14%), Postives = 154/285 (54.04%), Query Frame = 1
Query:   10 NTGAPSATDSCSGLDIITFADSLPSGTTCSNSFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIEC--DESPNDTGLTGVASATDDCSSVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAISGNGC--NQLITR 852
            +TG  +A D+CS + I T+ D++ +    + + TR W+ATD C N  ++ QI++  D T P +T+P +VT+EC  D S N+TG+   ASA D CSSVT++ +    +  G T   +R +IATD CG +  A Q I+  D  AP+  N P   T++C +++   S     TG   A D C    +I +SD    N C     I RTW  +D+C N  S VQ I + +   PS+  P N  + C A+   +NTG AT    C   +   FSD+++ N C  + +ITR
Sbjct:  562 HTGMATAADTCSAVTI-TYNDAITTNCGGAYTLTRTWIATDACGNSASTNQILTVRDTTRPTITLPPNVTLECPADISTNNTGM---ASAQDTCSSVTITFTDSVTNHCGGTQTISRKWIATDACGNSTNAVQTITVRDTTAPAL-NLPPNVTLECPADTSTNS-----TGAATAQDTCSAL-TIRYSDSVVTN-CGGTRVISRTWTATDACSNSVSAVQTITLRDTTPPSLSLPPNKVLQCPANVTTNNTGTATAQDACSAPVAIRFSDSVT-NPCPGSSVITR 833          
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Match: UPI00137A19E7 (hypothetical protein n=1 Tax=Sediminibacterium roseum TaxID=1978412 RepID=UPI00137A19E7)

HSP 1 Score: 129 bits (324), Expect = 5.490e-30
Identity = 100/275 (36.36%), Postives = 147/275 (53.45%), Query Frame = 1
Query:    4 PVNTGAPSATDSCSGLDIITFADSLPSGTTCSNSFTRVWVATDFCDNDVTSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCSSVTVSDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFPDTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDGIDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPSNTGEATVSGVCDPALTATFSDAISGN 828
            P  TG  +ATD+CS   ++T++D+  +G     + TR W ATD   N  T+ Q I+ TD   PV+T P + T+ C  S +    TG A+ATD CSSV++S +     S+       RT+ A D  G    ATQ I+ TDN  PS  +  D  T+ C+  +  +S      G P+A DNC   P++++SDV   N+      I RTW  +D+ GN  +  Q I IV+   P +  P++I++ C +S+ PS TG AT +  C    T T++D  SGN
Sbjct:  501 PAATGTATATDNCS-TPVVTYSDNSSNG---GYTITRTWKATDAAGNTATATQTITITDNVKPVITAPNNTTVNCGSSTSPNA-TGTATATDACSSVSISYTDLQSGSV-----ITRTWKAVDASGNFATATQTITVTDNTKPSIADVSD-VTIGCSQSTAPSSCG----GTPNAWDNC-STPTVSYSDVTNGNV------ITRTWKATDAAGNYATSTQLITIVDNTKPVLTEPNDITVGCGSSTLPSATGMATATDGCSTP-TVTYTDTQSGN 752          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85923.20028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V4WX90_9FLAO1.290e-3738.95Gliding motility-associated-like protein n=1 Tax=W... [more]
A0A1V4V1Y0_9EURY3.300e-3738.81HYR domain protein n=1 Tax=Methanosaeta sp. PtaB.B... [more]
UPI0005C9DEF22.770e-3436.30hypothetical protein n=1 Tax=Lacinutrix sp. Hel_I_... [more]
UPI00157ADDEF1.020e-3337.89SprB repeat-containing protein n=1 Tax=Psychroserp... [more]
A0A5C5VTS7_9BACT2.110e-3336.55HYR domain protein n=1 Tax=Phycisphaerae bacterium... [more]
A0A7K3WW99_9FLAO2.110e-3337.73T9SS type A sorting domain-containing protein n=1 ... [more]
A0A4Q9RQ85_9FLAO6.960e-3337.19Gliding motility-associated C-terminal domain-cont... [more]
A0A2N1PBI5_9BACT1.940e-3236.70Uncharacterized protein n=1 Tax=candidate division... [more]
A0A2V2S6A0_9BACT1.980e-3236.14Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
UPI00137A19E75.490e-3036.36hypothetical protein n=1 Tax=Sediminibacterium ros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85923contigM-pyrifera_M_contig85923:3..854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score138.7
Seed ortholog evalue4.3e-30
Seed eggNOG ortholog1484460.JSWG01000011_gene1805
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Large extracellular alpha-helical protein
EggNOG OGs1HWKJ@117743,4PKD0@976,COG2304@1,COG2304@2,COG3391@1,COG3391@2
COG Functional cat.U
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size852
Cds size852
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.6481755-CDS-M-pyrifera_M_contig85923:2..8541622816769.6481755-CDS-M-pyrifera_M_contig85923:2..854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85923 3..854 +
1692278167.8878236-CDS-M-pyrifera_M_contig85923:2..8541692278167.8878236-CDS-M-pyrifera_M_contig85923:2..854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85923 3..854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85923.20028.1prot_M-pyrifera_M_contig85923.20028.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85923 3..854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85923.20028.1

>prot_M-pyrifera_M_contig85923.20028.1 ID=prot_M-pyrifera_M_contig85923.20028.1|Name=mRNA_M-pyrifera_M_contig85923.20028.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=284bp
DPVNTGAPSATDSCSGLDIITFADSLPSGTTCSNSFTRVWVATDFCDNDV
TSLQIISRTDVTPPVLTIPADVTIECDESPNDTGLTGVASATDDCSSVTV
SDSVFFVSSIGCTDLFARTFIATDFCGFTDVATQDISSTDNEAPSFQNFP
DTATVQCTSESGAASVSPAITGEPDAIDNCDEFPSITFSDVETNNLCPDG
IDIQRTWVVSDSCGNDFSQVQEIDIVNLFNPSVVAPDNISIDCSASSDPS
NTGEATVSGVCDPALTATFSDAISGNGCNQLITR
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mRNA from alignment at M-pyrifera_M_contig85923:3..854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85923.20028.1 ID=mRNA_M-pyrifera_M_contig85923.20028.1|Name=mRNA_M-pyrifera_M_contig85923.20028.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig85923:3..854+ (Macrocystis pyrifera P11B4 male)
GATCCCGTGAACACTGGAGCGCCCTCTGCTACAGATTCGTGCTCAGGTCT TGATATCATTACATTCGCCGACTCACTTCCCTCCGGGACTACGTGCTCCA ACTCTTTCACCCGTGTGTGGGTGGCAACCGATTTTTGTGATAACGACGTT ACCAGTCTGCAGATCATTTCGAGGACTGATGTAACTCCTCCTGTATTGAC TATTCCCGCCGACGTCACCATCGAGTGCGACGAGTCTCCGAACGATACTG GATTGACTGGAGTTGCTTCTGCCACGGACGATTGCTCTTCCGTTACCGTC TCTGATTCAGTTTTCTTTGTGTCCTCAATCGGTTGCACTGATCTCTTTGC TCGAACTTTCATTGCTACGGATTTCTGTGGATTTACTGATGTCGCTACCC AGGATATCTCCTCCACTGATAACGAGGCACCTTCTTTCCAAAACTTCCCT GACACTGCCACCGTGCAGTGTACTTCCGAGAGTGGTGCTGCGTCTGTGTC GCCAGCTATCACTGGCGAGCCTGATGCAATTGACAACTGCGACGAATTTC CTTCCATCACCTTCTCGGATGTCGAGACCAACAACTTGTGCCCTGATGGA ATTGATATTCAGCGCACTTGGGTTGTGTCTGACAGTTGTGGAAACGACTT TTCCCAAGTACAGGAGATCGACATTGTGAACCTTTTCAACCCCTCAGTCG TGGCTCCCGACAACATCTCAATTGATTGCAGTGCATCTTCTGATCCTTCC AACACCGGAGAAGCCACTGTTTCTGGAGTTTGCGATCCTGCCCTAACCGC GACATTTTCAGATGCGATATCTGGTAACGGCTGCAACCAACTCATTACCA GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85923:3..854+

>mRNA_M-pyrifera_M_contig85923.20028.1 ID=mRNA_M-pyrifera_M_contig85923.20028.1|Name=mRNA_M-pyrifera_M_contig85923.20028.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1704bp|location=Sequence derived from alignment at M-pyrifera_M_contig85923:3..854+ (Macrocystis pyrifera P11B4 male)
GATCCCGTGAACACTGGAGCGCCCTCTGCTACAGATTCGTGCTCAGGTCT
TGATATCATTACATTCGCCGACTCACTTCCCTCCGGGACTACGTGCTCCA
ACTCTTTCACCCGTGTGTGGGTGGCAACCGATTTTTGTGATAACGACGTT
ACCAGTCTGCAGATCATTTCGAGGACTGATGTAACTCCTCCTGTATTGAC
TATTCCCGCCGACGTCACCATCGAGTGCGACGAGTCTCCGAACGATACTG
GATTGACTGGAGTTGCTTCTGCCACGGACGATTGCTCTTCCGTTACCGTC
TCTGATTCAGTTTTCTTTGTGTCCTCAATCGGTTGCACTGATCTCTTTGC
TCGAACTTTCATTGCTACGGATTTCTGTGGATTTACTGATGTCGCTACCC
AGGATATCTCCTCCACTGATAACGAGGCACCTTCTTTCCAAAACTTCCCT
GACACTGCCACCGTGCAGTGTACTTCCGAGAGTGGTGCTGCGTCTGTGTC
GCCAGCTATCACTGGCGAGCCTGATGCAATTGACAACTGCGACGAATTTC
CTTCCATCACCTTCTCGGATGTCGAGACCAACAACTTGTGCCCTGATGGA
ATTGATATTCAGCGCACTTGGGTTGTGTCTGACAGTTGTGGAAACGACTT
TTCCCAAGTACAGGAGATCGACATTGTGAACCTTTTCAACCCCTCAGTCG
TGGCTCCCGACAACATCTCAATTGATTGCAGTGCATCTTCTGATCCTTCC
AACACCGGAGAAGCCACTGTTTCTGGAGTTTGCGATCCTGCCCTAACCGC
GACATTTTCAGATGCGATATCTGGTAACGGCTGCAACCAACTCATTACCA
GAGATCCCGTGAACACTGGAGCGCCCTCTGCTACAGATTCGTGCTCAGGT
CTTGATATCATTACATTCGCCGACTCACTTCCCTCCGGGACTACGTGCTC
CAACTCTTTCACCCGTGTGTGGGTGGCAACCGATTTTTGTGATAACGACG
TTACCAGTCTGCAGATCATTTCGAGGACTGATGTAACTCCTCCTGTATTG
ACTATTCCCGCCGACGTCACCATCGAGTGCGACGAGTCTCCGAACGATAC
TGGATTGACTGGAGTTGCTTCTGCCACGGACGATTGCTCTTCCGTTACCG
TCTCTGATTCAGTTTTCTTTGTGTCCTCAATCGGTTGCACTGATCTCTTT
GCTCGAACTTTCATTGCTACGGATTTCTGTGGATTTACTGATGTCGCTAC
CCAGGATATCTCCTCCACTGATAACGAGGCACCTTCTTTCCAAAACTTCC
CTGACACTGCCACCGTGCAGTGTACTTCCGAGAGTGGTGCTGCGTCTGTG
TCGCCAGCTATCACTGGCGAGCCTGATGCAATTGACAACTGCGACGAATT
TCCTTCCATCACCTTCTCGGATGTCGAGACCAACAACTTGTGCCCTGATG
GAATTGATATTCAGCGCACTTGGGTTGTGTCTGACAGTTGTGGAAACGAC
TTTTCCCAAGTACAGGAGATCGACATTGTGAACCTTTTCAACCCCTCAGT
CGTGGCTCCCGACAACATCTCAATTGATTGCAGTGCATCTTCTGATCCTT
CCAACACCGGAGAAGCCACTGTTTCTGGAGTTTGCGATCCTGCCCTAACC
GCGACATTTTCAGATGCGATATCTGGTAACGGCTGCAACCAACTCATTAC
CAGA
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