mRNA_M-pyrifera_M_contig85921.20027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85921.20027.1
Unique NamemRNA_M-pyrifera_M_contig85921.20027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A7L3BG11_9AVES (PFD2 protein (Fragment) n=1 Tax=Syrrhaptes paradoxus TaxID=302527 RepID=A0A7L3BG11_9AVES)

HSP 1 Score: 87.4 bits (215), Expect = 9.000e-20
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVIETL + D GR+CFRMVGG+LVERTVKEVLPA+   R+ I  ++ TL  QL AK +EL E + K  IR  G +
Sbjct:   66 SLVIETLREVDPGRKCFRMVGGILVERTVKEVLPALENNREQISKIIETLNQQLQAKGRELNEFREKHNIRLVGED 141
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BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: UPI001CFB0C56 (prefoldin subunit 2 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB0C56)

HSP 1 Score: 87.0 bits (214), Expect = 1.310e-19
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVIETL + D  RRC+RMVGGVLVERTV+EVLPA+ + +D IG ++ TL  Q+ AK +EL + + K+ IR  G E
Sbjct:   52 SLVIETLKEVDPSRRCYRMVGGVLVERTVREVLPALEKNKDQIGKIMETLNQQMQAKGRELVDYREKYNIRLVGEE 127
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BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A7E6CXM5_9CHIR (prefoldin subunit 2 isoform X1 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A7E6CXM5_9CHIR)

HSP 1 Score: 87.0 bits (214), Expect = 1.480e-19
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVI+TL + DE RRCFRMVGGVLVERTVKEVLPA+   ++ I  ++ TL  QL AK KEL E + K  IR  G E
Sbjct:   58 SLVIDTLKEVDETRRCFRMVGGVLVERTVKEVLPALESNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEE 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A8J6ED67_ELECQ (Uncharacterized protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6ED67_ELECQ)

HSP 1 Score: 84.7 bits (208), Expect = 3.340e-19
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            +LVI+TL + D+ R+CFRMVGGVLVERTVKEVLPA+   ++ I  ++ TL TQL AK +EL E + K  IR  G +
Sbjct:    7 TLVIDTLKEVDQSRKCFRMVGGVLVERTVKEVLPALENNKEQINKIIETLGTQLQAKGRELNEYREKHNIRVMGED 82
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BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: E3K2W9_PUCGT (Uncharacterized protein n=2 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=E3K2W9_PUCGT)

HSP 1 Score: 84.7 bits (208), Expect = 4.600e-19
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRAT 219
            S+V+ETL KTD GR+CFRM+GGV++ERTVKE+LP + E R NI   L TL +Q  AK  E+++ Q K+ ++ T
Sbjct:   44 SVVVETLKKTDPGRKCFRMIGGVMIERTVKEILPDLEEHRSNINDALKTLLSQYQAKNTEMQDYQKKWNVKVT 116
[Close]
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A8C5PLQ1_9ANUR (Prefoldin subunit 2 n=2 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PLQ1_9ANUR)

HSP 1 Score: 84.7 bits (208), Expect = 7.940e-19
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            +LVI+TL   D+ R+CFR+VGGVLVERTVKEVLPA+   ++ I  ++ TL TQL AK KEL E + K  IR  G +
Sbjct:   40 ALVIDTLKDVDQSRKCFRLVGGVLVERTVKEVLPALENNKEQINKIIETLNTQLQAKGKELNEFREKHNIRIMGED 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A8C2VPB1_CHILA (Prefoldin subunit 2 n=2 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2VPB1_CHILA)

HSP 1 Score: 84.7 bits (208), Expect = 1.130e-18
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVI+TL + DE R+CFRMVGGVLVERTVKEVLPA+   ++ I  ++ TL  QL AK KEL E + K  IR  G +
Sbjct:   55 SLVIDTLKEVDETRKCFRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A5N4CMK0_CAMDR (Prefoldin subunit 2 (Fragment) n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4CMK0_CAMDR)

HSP 1 Score: 84.7 bits (208), Expect = 1.150e-18
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVI+TL + DE R+C+RMVGGVLVERTVKEVLPA+   R+ I  ++ TL  QL AK KEL E + K  IR  G +
Sbjct:   56 SLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNREQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: A0A851D801_TODME (PFD2 protein (Fragment) n=2 Tax=Coraciiformes TaxID=8936 RepID=A0A851D801_TODME)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-18
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVIETL + D  R+C+RMVGG+LVERTVKEVLPA+   ++ IG ++ TL  QL AK +EL E + K  IR  G +
Sbjct:   31 SLVIETLREVDPTRKCYRMVGGILVERTVKEVLPALENNKEQIGKIIETLNQQLQAKGRELNEFREKHNIRLLGED 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Match: S7NGG7_MYOBR (Prefoldin subunit 2 n=6 Tax=Chiroptera TaxID=9397 RepID=S7NGG7_MYOBR)

HSP 1 Score: 84.7 bits (208), Expect = 1.210e-18
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATLQTQLDAKQKELRELQAKFKIRATGSE 228
            SLVI+TL + DE R+CFRMVGGVLVERTVKEVLPA+   ++ I  ++ TL  QL AK KEL E + K  IR  G +
Sbjct:   59 SLVIDTLKEVDETRKCFRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGED 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85921.20027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7L3BG11_9AVES9.000e-2057.89PFD2 protein (Fragment) n=1 Tax=Syrrhaptes paradox... [more]
UPI001CFB0C561.310e-1956.58prefoldin subunit 2 n=1 Tax=Protopterus annectens ... [more]
A0A7E6CXM5_9CHIR1.480e-1960.53prefoldin subunit 2 isoform X1 n=1 Tax=Phyllostomu... [more]
A0A8J6ED67_ELECQ3.340e-1955.26Uncharacterized protein n=2 Tax=Eleutherodactylus ... [more]
E3K2W9_PUCGT4.600e-1953.42Uncharacterized protein n=2 Tax=Puccinia graminis ... [more]
A0A8C5PLQ1_9ANUR7.940e-1955.26Prefoldin subunit 2 n=2 Tax=Leptobrachium leishane... [more]
A0A8C2VPB1_CHILA1.130e-1857.89Prefoldin subunit 2 n=2 Tax=Chinchilla lanigera Ta... [more]
A0A5N4CMK0_CAMDR1.150e-1857.89Prefoldin subunit 2 (Fragment) n=1 Tax=Camelus dro... [more]
A0A851D801_TODME1.200e-1855.26PFD2 protein (Fragment) n=2 Tax=Coraciiformes TaxI... [more]
S7NGG7_MYOBR1.210e-1857.89Prefoldin subunit 2 n=6 Tax=Chiroptera TaxID=9397 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85921contigM-pyrifera_M_contig85921:74..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog10141.ENSCPOP00000012516
Preferred namePFDN2
KEGG koko:K09549
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0044183,GO:0044424,GO:0044464
EggNOG free text desc.Prefoldin subunit
EggNOG OGs35AG3@314146,3A5N8@33154,3BSP7@33208,3D9C7@33213,3J7SS@40674,483FK@7711,490N9@7742,4PUSD@9989,KOG4098@1,KOG4098@2759
COG Functional cat.O
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.6009698-CDS-M-pyrifera_M_contig85921:73..1991622816769.6009698-CDS-M-pyrifera_M_contig85921:73..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85921 74..199 +
1692278167.862468-CDS-M-pyrifera_M_contig85921:73..1991692278167.862468-CDS-M-pyrifera_M_contig85921:73..199Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85921 74..199 +
1622816769.6122563-CDS-M-pyrifera_M_contig85921:277..4631622816769.6122563-CDS-M-pyrifera_M_contig85921:277..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85921 278..463 +
1692278167.8751519-CDS-M-pyrifera_M_contig85921:277..4631692278167.8751519-CDS-M-pyrifera_M_contig85921:277..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85921 278..463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85921.20027.1prot_M-pyrifera_M_contig85921.20027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85921 74..463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85921.20027.1

>prot_M-pyrifera_M_contig85921.20027.1 ID=prot_M-pyrifera_M_contig85921.20027.1|Name=mRNA_M-pyrifera_M_contig85921.20027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
SLVIETLSKTDEGRRCFRMVGGVLVERTVKEVLPAVAEKRDNIGTMLATL
QTQLDAKQKELRELQAKFKIRATGSEAGGGGGGGGGGGGGGGGGGSVSTG
VLV*
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mRNA from alignment at M-pyrifera_M_contig85921:74..463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85921.20027.1 ID=mRNA_M-pyrifera_M_contig85921.20027.1|Name=mRNA_M-pyrifera_M_contig85921.20027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig85921:74..463+ (Macrocystis pyrifera P11B4 male)
AGCTTGGTCATTGAGACGTTGTCCAAGACAGATGAGGGGCGCCGCTGCTT
CCGCATGGTCGGCGGCGTGCTGGTGGAGAGGACCGTGAAGGAAGTGTTGC
CTGCGGTTGCTGAGAAGCGTGACAACGTGAGCCACGCCTTGCCTCCCCGC
CCCCGCCACACCCTGCCAGCCCTCGCGTGATCCACTTACCTCGCCCACCC
ACAGATCGGCACGATGCTGGCGACGCTGCAAACGCAGCTGGACGCCAAGC
AGAAGGAGTTGCGCGAGCTGCAGGCCAAGTTCAAAATCCGTGCCACTGGC
AGCGAGGCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGCGG
CGGCGGCGGCGGCAGCGTGTCCACTGGCGTGTTGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85921:74..463+

>mRNA_M-pyrifera_M_contig85921.20027.1 ID=mRNA_M-pyrifera_M_contig85921.20027.1|Name=mRNA_M-pyrifera_M_contig85921.20027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig85921:74..463+ (Macrocystis pyrifera P11B4 male)
AGCTTGGTCATTGAGACGTTGTCCAAGACAGATGAGGGGCGCCGCTGCTT
CCGCATGGTCGGCGGCGTGCTGGTGGAGAGGACCGTGAAGGAAGTGTTGC
CTGCGGTTGCTGAGAAGCGTGACAACAGCTTGGTCATTGAGACGTTGTCC
AAGACAGATGAGGGGCGCCGCTGCTTCCGCATGGTCGGCGGCGTGCTGGT
GGAGAGGACCGTGAAGGAAGTGTTGCCTGCGGTTGCTGAGAAGCGTGACA
ACATCGGCACGATGCTGGCGACGCTGCAAACGCAGCTGGACGCCAAGCAG
AAGGAGTTGCGCGAGCTGCAGGCCAAGTTCAAAATCCGTGCCACTGGCAG
CGAGGCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGCGGCG
GCGGCGGCGGCAGCGTGTCCACTGGCGTGTTGGTGTGAATCGGCACGATG
CTGGCGACGCTGCAAACGCAGCTGGACGCCAAGCAGAAGGAGTTGCGCGA
GCTGCAGGCCAAGTTCAAAATCCGTGCCACTGGCAGCGAGGCAGGGGGCG
GCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGCGGCGGCGGCGGCGGCAGC
GTGTCCACTGGCGTGTTGGTGTGA
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