mRNA_M-pyrifera_M_contig8592.20026.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8592.20026.1
Unique NamemRNA_M-pyrifera_M_contig8592.20026.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Match: A0A6H5J9V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V3_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 5.640e-91
Identity = 119/206 (57.77%), Postives = 161/206 (78.16%), Query Frame = 1 
Query:    1 PWKNKQPEMRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWVVSLYNDICHRRLHGHKDTCPQKG---ISPREEMLIYPHEDGMLSYLKHGWNGWSSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLSKEDEDLLNQQAVQNANPRKAVGISEFNPEEVQRLNATIQLDWKLY 609
            PW  + P  RH ++E HCG+A+S MQAR+AL +MR +H KN CGFFAFT+VRPPL+W+VSLY+D+CHRRL GHKDTCPQ+    ++P++EML YPH DG++SYL HG+NGW+SPGPVD   VE+  +S   +LD+VA T EVP++RR+LT  F AP GVL+ + ED L++  +QNAN  K + +S+F+P+E+ +LN+TIQLDW LY
Sbjct:   10 PWLKESPSHRHKLIEFHCGDALSLMQAREALETMRHEHAKNDCGFFAFTMVRPPLEWLVSLYDDLCHRRLRGHKDTCPQQAGDSMTPKQEMLAYPHRDGLVSYLAHGFNGWASPGPVDEGTVEEILESFGRHLDLVALTSEVPQIRRYLTKRFVAPHGVLTPQVEDALHRGELQNANKVKTIRLSDFDPDELAQLNSTIQLDWMLY 215
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BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Match: D7G147_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G147_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 9.920e-89
Identity = 117/204 (57.35%), Postives = 160/204 (78.43%), Query Frame = 1 
Query:    1 PWKNKQPEMRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWVVSLYNDICHRRLHGHKDTCPQKG-ISPREEMLIYPHEDGMLSYLKHGWNGWSSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLSKEDEDLLNQQAVQNANPRKAVGISEFNPEEVQRLNATIQLDWKLY 609
            PW  + P  RH ++E HCG+A+SFMQAR+AL +MR +H KN CGFFAFT+VR PL+W+VSLY+D+CHRRL GHK+TCPQ+  ++P++EML YPH DG++SYL HG+NGW+SPG VD   VE+  +S   +LD+VA T EVP++RR+LT  F AP GVL+ + ED L++  +QNAN  K + +S+F+P+E+ +LN+TIQLDW LY
Sbjct:   20 PWLQESPSQRHKLIEFHCGDALSFMQAREALETMRHEHAKNDCGFFAFTMVRQPLEWLVSLYDDLCHRRLKGHKETCPQQNSMTPKQEMLAYPHRDGLVSYLAHGFNGWASPGSVDERTVEEILESFGRHLDLVALTSEVPQIRRYLTRRFVAPHGVLTPQVEDNLDRGELQNANKVKTIRLSDFDPDELAQLNSTIQLDWMLY 223
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BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Match: D7FL74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL74_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 5.850e-74
Identity = 100/168 (59.52%), Postives = 133/168 (79.17%), Query Frame = 1 
Query:    1 PWKNKQPEMRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWVVSLYNDICHRRLHGHKDTCPQK-GISPREEMLIYPHEDGMLSYLKHGWNGWSSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLSKEDEDLLNQ 501
            PW  + P  RH ++E HCG+A+SFMQAR+AL +MR +H KN CGFFAFT+VRPPL+W+VSLY+D+CHRRL GHKDTCPQ+  ++P++EML YPH DG++SYL HG+ GW+SPGPVD   VE+  +S   +LD+VA T EVP++RR+LT  F AP GVL+ + ED L++
Sbjct:  144 PWLKESPSQRHKLIEFHCGDALSFMQAREALETMRHEHAKNDCGFFAFTMVRPPLEWLVSLYDDLCHRRLRGHKDTCPQQDSMTPKQEMLAYPHRDGLVSYLAHGFKGWASPGPVDEGTVEEMLESFGRHLDLVALTSEVPQIRRYLTKRFVAPHGVLTPQVEDALDR 311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8592.20026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J9V3_9PHAE5.640e-9157.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G147_ECTSI9.920e-8957.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL74_ECTSI5.850e-7459.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8592contigM-pyrifera_M_contig8592:5669..8609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size609
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8592.20026.1prot_M-pyrifera_M_contig8592.20026.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8592 5693..8609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.5086439-UTR-M-pyrifera_M_contig8592:5668..56921622816769.5086439-UTR-M-pyrifera_M_contig8592:5668..5692Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8592 5669..5692 +
1692278167.7985268-UTR-M-pyrifera_M_contig8592:5668..56921692278167.7985268-UTR-M-pyrifera_M_contig8592:5668..5692Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8592 5669..5692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816769.5239708-CDS-M-pyrifera_M_contig8592:5692..57361622816769.5239708-CDS-M-pyrifera_M_contig8592:5692..5736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 5693..5736 +
1692278167.811298-CDS-M-pyrifera_M_contig8592:5692..57361692278167.811298-CDS-M-pyrifera_M_contig8592:5692..5736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 5693..5736 +
1622816769.534574-CDS-M-pyrifera_M_contig8592:6243..64151622816769.534574-CDS-M-pyrifera_M_contig8592:6243..6415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 6244..6415 +
1692278167.8202586-CDS-M-pyrifera_M_contig8592:6243..64151692278167.8202586-CDS-M-pyrifera_M_contig8592:6243..6415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 6244..6415 +
1622816769.5458179-CDS-M-pyrifera_M_contig8592:7061..71811622816769.5458179-CDS-M-pyrifera_M_contig8592:7061..7181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 7062..7181 +
1692278167.8295798-CDS-M-pyrifera_M_contig8592:7061..71811692278167.8295798-CDS-M-pyrifera_M_contig8592:7061..7181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 7062..7181 +
1622816769.5574415-CDS-M-pyrifera_M_contig8592:7333..74801622816769.5574415-CDS-M-pyrifera_M_contig8592:7333..7480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 7334..7480 +
1692278167.8399296-CDS-M-pyrifera_M_contig8592:7333..74801692278167.8399296-CDS-M-pyrifera_M_contig8592:7333..7480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 7334..7480 +
1622816769.5699341-CDS-M-pyrifera_M_contig8592:8507..86091622816769.5699341-CDS-M-pyrifera_M_contig8592:8507..8609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 8508..8609 +
1692278167.8502963-CDS-M-pyrifera_M_contig8592:8507..86091692278167.8502963-CDS-M-pyrifera_M_contig8592:8507..8609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8592 8508..8609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8592.20026.1

>prot_M-pyrifera_M_contig8592.20026.1 ID=prot_M-pyrifera_M_contig8592.20026.1|Name=mRNA_M-pyrifera_M_contig8592.20026.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MRHSVVELHCGNAISFMQARDALASMRADHDKNGCGFFAFTVVRPPLDWV
VSLYNDICHRRLHGHKDTCPQKGISPREEMLIYPHEDGMLSYLKHGWNGW
SSPGPVDASVVEDTSKSLRSYLDIVAFTEEVPKLRRFLTTHFSAPGGVLS
KEDEDLLNQQAVQNANPRKAVGISEFNPEEVQRLNATIQLDWKLY
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mRNA from alignment at M-pyrifera_M_contig8592:5669..8609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8592.20026.1 ID=mRNA_M-pyrifera_M_contig8592.20026.1|Name=mRNA_M-pyrifera_M_contig8592.20026.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2941bp|location=Sequence derived from alignment at M-pyrifera_M_contig8592:5669..8609+ (Macrocystis pyrifera P11B4 male)
CCGTGGAAAAACAAGCAACCGGAGATGCGGCATAGCGTTGTAGAGTTGCA
CTGCGGTAACGCAATCAGGTGAGGGGCAGGTCGAAGTCATCTCTTTCTTC
GTGTTTCGTTTTGGAAGAAGGCGGGCGCGAGGGCGGGGTACGGTAGGATG
GGGTGGAGGGGGGGGCAGGGGATACGGCGCGTTATGCTTCGTTTTTGGTG
CAGTGGGGAGTTCCCGCTGGCCTGTACGTGGGAGGGGCGGGGGGGCACTC
ATTCGTTGCTTGCCACATTCATTTGGCCACTATCCGCGCATCGTGTTCGA
GACGGAGCACCCTTTCTACTATTTTTCAGACACCTCCAACATTTGGGCGC
TCATGGCGTTTTTTTCCATATACGTGGTATTAGCCTGTAGCGGGGGGCAG
GGTTGGGTGGAGCGGGGGGGGGAGGGGAGGAGGGGATCGCCCGCGTGCGG
CGCACCTTTTATTTTTATGTTCGTGTGTTGAAAAGCTTCCGTGGACCCGG
GGCTATACTGTAATTGCACTGGGATTGACGTGTCTTACCGGCCTTGACGC
TCTCCCGTTCGTGCTCGGCGAGCAGCTTCATGCAGGCTAGGGATGCTTTG
GCTAGTATGCGGGCGGATCACGACAAAAACGGTTGCGGTTTTTTTGCGTT
CACGGTTGTTCGGCCACCCTTGGACTGGGTGGTGTCGCTGTACAACGACA
TCTGCCACCGGCGCTTGCACGGGCATAAAGACACGTGCCCTCAGAAGGTA
AGCATTGGTGGTGGTGGCGGTGGTGGTGGTGATGGAAGTGGTAGAGGTGG
TGGCAGTGGCGGTGTTGTTTAGTGTGGAGGGTGGTGATGGTGGTCGTGAT
GTGGAGTTGGTTGTTATTGTTCTGCCGATGTTGCGTTTGTTGATCTTGCA
CACTCGTGCTTCGTTGGCCGTGAGTCAAGAACTGCGACAGTTTAATCGCG
AACAGGAATATCCGCTGAAATTGCCGAAAACGAAACGGCCTTGCCCAAAA
AAAATTGCGATGAAAATGTCACGCGAAAAATCCTAAGCCGACTACGCCAA
TTGTTAAGATCAAGGTCGGGACACTGTGTATCCCTTGACAGGTTTTCCTG
TTGAGTAGGCACTCGTTGGTACTCGAATGTATTGTTGCCTTAGAGATAGA
AGATCAGCTTCATTCCTTTCATGCACGTGGAGACTGAGGGCAAGACTCGT
GCCTCGCTGGGGAAAACCCCATCTAAGATAGGCCTCCCAAGTGCTACAAA
TACGATCCCAATACCTGAACCCAGGCAATTACCGGGTTTTCAGTCTCGTT
CAAAGGAGTACCACAACACTACTGTTTTGACCTCGTTCCTAGTTGACTGG
GCCCCATGTTTTCTCTTCCGCCGATGGTTTATATTGACGCAAGGGGATTT
CACCGCGGGAGGAGATGCTGATCTATCCCCACGAGGATGGGATGCTTTCG
TACCTCAAGCACGGCTGGAACGGGTGGAGTTCGCCAGGACCCGTGGATGC
ATCGGTCGTCGAGGTGAATGCTTCTTGCTGGCTGTGTTTTGCCTTGCCTT
GCCTTTGCGTGCCTTCCCTTGCCTTGCCTTGCCTTGCCTTGACTTGAACG
AAGGTGTGTGTTCTCTTGCATGTTACAGCAACGACTGATGCTTACTTGCT
GTGTGGTATTAATAGGACACGTCCAAGTCTCTGCGAAGCTATCTGGACAT
CGTTGCGTTCACGGAGGAGGTACCCAAGCTTCGACGGTTCCTGACGACGC
ACTTCTCTGCCCCCGGTGGTGTGCTCTCGAAGGAGGATGAAGACCTTCTC
AACCAACAAGCGGTAAGAGCCTGCAACAGCTTTTTTTACCTTGAGTAAGC
TACCTGGTACCAGTATCTCACAAGGGTGTGTTCGGTAGGGCATGTACTCT
GGGTGTACCCGGGTACCTACCCGAGTATGACACAAAACATCCCGACGAAA
ACAACCAGGTTTGGTACCCGGGTACCCCAGAGTTACCTTGAAAAGACCGT
TATCACACAAGTGGTGGTAAGTAGGGTACGTAGTCGGCATACGCGGGTAC
CTTCCCGAGTATTGCCAAAACCAGCTGGTTTGGTACCCGGTCACCCCAGA
GTTTCCTTGGGTAAACTATATCACAAGGGTGTGCTTGGTAGGGTACGTGC
TCTGGGCGTGCCGGGATACCTACCTGAGTATGATCCAAAGCAATCAGGTT
CGGTATCTGGATATCCCAGAGTTACCTCGAATTGATTGAATCACAAGAGT
GGTTAGTAGGCTTTGTACTCTGAGCGTGCCCGGGTACCTACCCGAGTATG
ACCATACCAACCGGGTTTGGTAACCGGGTACCCCAGAGTATATAAAGGGT
GTGTTCGGTAGGTTTGTGTACTCTGGGCGAACCCGGTTACCTACCCGAGT
ATGACCATGCCAATCAGGATTGGTACCCGAGTACTCCAGAGTATACACCC
TATTAAACACACGCTTGCTGGTAGCGCTAGAAGTACGTCAGCTGTTCTTT
CGGTCAATGTCAACGCTTGCTCCTGCCCCCCCCCCCCACCCCCTATCAGG
GTCCCGACCCAACTACCCAGCTGGATATCGACACCCCCGCCGATTGTCCG
GCTGCTTCGTCGTTCGGCGTCGACTACGGCACGCTCGCTACCTTACGATC
TGTTACGATACCGCACGACCTCTCACGCTACGTGCTACACGATGTCTCAC
GCATCGCACGCTACCGAACGCTATCTTGCACTAAGAGTACCGCACGCTAT
GTTGCACTGCCCCGCGCTGTCTCGCTTTATTGTCGATGCGCGATCTCACG
GTGTGTATACCGCCCGATATCCTACGCTGCCTGAAACAGGTGCAAAATGC
CAACCCAAGGAAGGCGGTCGGCATTTCCGAGTTCAATCCGGAAGAAGTCC
AACGGCTGAACGCGACTATCCAGCTCGACTGGAAGCTCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8592:5669..8609+

>mRNA_M-pyrifera_M_contig8592.20026.1 ID=mRNA_M-pyrifera_M_contig8592.20026.1|Name=mRNA_M-pyrifera_M_contig8592.20026.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig8592:5669..8609+ (Macrocystis pyrifera P11B4 male)
ATGCGGCATAGCGTTGTAGAGTTGCACTGCGGTAACGCAATCAGATGCGG
CATAGCGTTGTAGAGTTGCACTGCGGTAACGCAATCAGCTTCATGCAGGC
TAGGGATGCTTTGGCTAGTATGCGGGCGGATCACGACAAAAACGGTTGCG
GTTTTTTTGCGTTCACGGTTGTTCGGCCACCCTTGGACTGGGTGGTGTCG
CTGTACAACGACATCTGCCACCGGCGCTTGCACGGGCATAAAGACACGTG
CCCTCAGAAGCTTCATGCAGGCTAGGGATGCTTTGGCTAGTATGCGGGCG
GATCACGACAAAAACGGTTGCGGTTTTTTTGCGTTCACGGTTGTTCGGCC
ACCCTTGGACTGGGTGGTGTCGCTGTACAACGACATCTGCCACCGGCGCT
TGCACGGGCATAAAGACACGTGCCCTCAGAAGGGGATTTCACCGCGGGAG
GAGATGCTGATCTATCCCCACGAGGATGGGATGCTTTCGTACCTCAAGCA
CGGCTGGAACGGGTGGAGTTCGCCAGGACCCGTGGATGCATCGGTCGTCG
AGGGGATTTCACCGCGGGAGGAGATGCTGATCTATCCCCACGAGGATGGG
ATGCTTTCGTACCTCAAGCACGGCTGGAACGGGTGGAGTTCGCCAGGACC
CGTGGATGCATCGGTCGTCGAGGACACGTCCAAGTCTCTGCGAAGCTATC
TGGACATCGTTGCGTTCACGGAGGAGGTACCCAAGCTTCGACGGTTCCTG
ACGACGCACTTCTCTGCCCCCGGTGGTGTGCTCTCGAAGGAGGATGAAGA
CCTTCTCAACCAACAAGCGGACACGTCCAAGTCTCTGCGAAGCTATCTGG
ACATCGTTGCGTTCACGGAGGAGGTACCCAAGCTTCGACGGTTCCTGACG
ACGCACTTCTCTGCCCCCGGTGGTGTGCTCTCGAAGGAGGATGAAGACCT
TCTCAACCAACAAGCGGTGCAAAATGCCAACCCAAGGAAGGCGGTCGGCA
TTTCCGAGTTCAATCCGGAAGAAGTCCAACGGCTGAACGCGACTATCCAG
CTCGACTGGAAGCTCTACGTGCAAAATGCCAACCCAAGGAAGGCGGTCGG
CATTTCCGAGTTCAATCCGGAAGAAGTCCAACGGCTGAACGCGACTATCC
AGCTCGACTGGAAGCTCTAC
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