mRNA_M-pyrifera_M_contig85873.20019.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85873.20019.1
Unique NamemRNA_M-pyrifera_M_contig85873.20019.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A2D8LVA8_9ACTN (ATP-dependent DNA helicase n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LVA8_9ACTN)

HSP 1 Score: 474 bits (1221), Expect = 5.370e-161
Identity = 238/285 (83.51%), Postives = 266/285 (93.33%), Query Frame = 1 
Query:    1 NEQVRYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKLDAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIPA 855
            ++ + + +MAVFYR N+ SRV+EEFL+RVGIPYKVVGGTRFYDRREIKDA+AYLRAIVNPTDEVSVKR++N PKRGVGDSSIGKLDAWASA GESFDQAV+RFDEAGV GRAA G+EKFLV+TTEIRKL A PATIIEEAL+RSGYL ELQ ERSVEAEGRLENLSELVGMAREYETVD+FLEQ+SLV+DTDD  +EESTVTLMTLH+AKGLE+P VF++GMEDGVFPH+R+LG+P ELEEERRLAYVGITRAMQKLHLTSA SRM+HG TQYNPPSRFLDEIP+
Sbjct:  343 HDHMHWGDMAVFYRTNSMSRVIEEFLVRVGIPYKVVGGTRFYDRREIKDALAYLRAIVNPTDEVSVKRIINTPKRGVGDSSIGKLDAWASANGESFDQAVLRFDEAGVGGRAATGIEKFLVMTTEIRKLQAEPATIIEEALERSGYLAELQNERSVEAEGRLENLSELVGMAREYETVDDFLEQVSLVSDTDDIDEEESTVTLMTLHAAKGLEFPVVFLVGMEDGVFPHVRALGDPSELEEERRLAYVGITRAMQKLHLTSAWSRMMHGQTQYNPPSRFLDEIPS 627
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A6B1B0P9_9ACTN (ATP-dependent DNA helicase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B0P9_9ACTN)

HSP 1 Score: 430 bits (1106), Expect = 8.910e-144
Identity = 219/284 (77.11%), Postives = 249/284 (87.68%), Query Frame = 1 
Query:    1 NEQVRYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKLDAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            NE +R+DEMAVFYR N+QSRVLEE L+RVGIPY++VGG RFYDRREIKDA+AYLRAIVNPTDEVSVKRV+NVPKRGVGDSSI KLDAWA++ G SF +A+  +  AGV+GRA  G+E+FL +T +IR+LDAGPATIIEEAL+RSGYLEELQA   +EAEGRLEN+ EL+GMAR++ETVDEF EQISLVTDTDD  D ES VTLMTLHSAKGLE+P VF+ GMEDGV PHIR+LGEP ELEEERRLAYVG+TRAMQ LHLT A SRML+G TQYNPPSRF  EIP
Sbjct:  344 NEGMRWDEMAVFYRTNSQSRVLEEQLVRVGIPYQLVGGARFYDRREIKDAVAYLRAIVNPTDEVSVKRVLNVPKRGVGDSSISKLDAWAASQGLSFSEALRDYRNAGVSGRATTGIEQFLQITADIRELDAGPATIIEEALERSGYLEELQATLGIEAEGRLENIMELLGMARDFETVDEFTEQISLVTDTDDMDDNESLVTLMTLHSAKGLEFPVVFLTGMEDGVLPHIRTLGEPRELEEERRLAYVGVTRAMQALHLTCAWSRMLNGMTQYNPPSRFFSEIP 627
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A3M2HB27_ACTSX (ATP-dependent DNA helicase (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2HB27_ACTSX)

HSP 1 Score: 406 bits (1043), Expect = 1.270e-134
Identity = 202/283 (71.38%), Postives = 245/283 (86.57%), Query Frame = 1 
Query:    4 EQVRYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKLDAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            E +R+ +MAVFYR NAQSRV+EEFL+R GIPYKV+GGTRF+DRRE+KDA+AYL+A+VNP DEVSVKRV+N PKRGVGD+SIG+LDA+A A G +F +A+ R DEAGVTGRAAAG+++F+ L   +  L+AGPA ++EE L+RSGYL EL  +RS+EAEGRLENLSELVGMAR+++ VD FLE++SLV D D+  ++ES V LMTLHSAKGLE+P V ++G+EDGVFPHIR+LGEP ELEEERRLAYVGITRAMQ+L LTSA SR LHG TQYNPPSRFLDEIP
Sbjct:  355 EHLRWGDMAVFYRTNAQSRVIEEFLVRAGIPYKVIGGTRFFDRREVKDALAYLKAVVNPADEVSVKRVLNTPKRGVGDTSIGRLDAFARAHGITFAEALRRHDEAGVTGRAAAGIDRFVELIDAVAALEAGPAVLLEELLERSGYLAELTGQRSIEAEGRLENLSELVGMARQHDDVDTFLEEVSLVADVDELDEDESAVVLMTLHSAKGLEFPVVCLVGLEDGVFPHIRALGEPAELEEERRLAYVGITRAMQRLVLTSAWSRTLHGATQYNPPSRFLDEIP 637
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A7Y2DDP0_9ACTN (ATP-dependent DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DDP0_9ACTN)

HSP 1 Score: 398 bits (1023), Expect = 3.340e-131
Identity = 197/281 (70.11%), Postives = 239/281 (85.05%), Query Frame = 1 
Query:   13 RYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKL-DAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            R+ + AVFYR NAQSR LEE+L+RVGIPY+VVGGTRFYDRRE+KDA+AY+RA+VNP DEVS+KR++NVPKRG+GDSS+ KLD WA A G  F +++ R  EAGV+GRA  G++ FL L  E+ +L D  PA ++E  LDR+GY+ ELQAERS+EAEGRLENL+EL+G+ARE+ET+ EFLE  SLV DTD   D+ES+ TLMTLHSAKGLE+P VF+IG+EDGVFPH+RSLGEP ELEEERRLAYVGITRA ++LH++ A SRMLHGTTQYNPPSRFLDEIP
Sbjct:  348 RWGDFAVFYRTNAQSRALEEYLVRVGIPYQVVGGTRFYDRREVKDAMAYIRAVVNPADEVSLKRIINVPKRGIGDSSVAKLDNWAIANGAEFMESLRRQSEAGVSGRAVRGIDSFLDLHAELSELIDGSPAEMLEAVLDRTGYVAELQAERSIEAEGRLENLAELIGVAREHETIAEFLESTSLVADTDSLDDDESSATLMTLHSAKGLEFPVVFLIGLEDGVFPHMRSLGEPDELEEERRLAYVGITRAQERLHVSHAWSRMLHGTTQYNPPSRFLDEIP 628
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A520XZH8_9ACTN (ATP-dependent DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XZH8_9ACTN)

HSP 1 Score: 391 bits (1004), Expect = 1.660e-128
Identity = 194/282 (68.79%), Postives = 237/282 (84.04%), Query Frame = 1 
Query:   13 RYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTE--IRKLDAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            R+ +MAVFYR NAQSR LEE+L+RV IPYKV+GGTRFYDRRE+KDA+AYL+A+ NP DEVS+KRV+NVPKRGVGDS++GKLD WA+A G  F  A+  +DEAGV+GRA  G+++FL +  E  +     GPA ++   LDRSGYL EL+ ERS+EAEGRLENL+EL+G A ++E+V+EFLEQ+SLV DTDD  D+ES+V LMTLHSAKGLE+P VF+IG+EDGVFPH+RSLGEP ELEEERRLAYVGITRA ++L ++ A SRMLHG TQYNPPSRFLDEIP
Sbjct:  346 RWGDMAVFYRTNAQSRALEEYLVRVNIPYKVIGGTRFYDRREVKDALAYLKAVANPVDEVSIKRVLNVPKRGVGDSTVGKLDNWATANGVPFIDALRNYDEAGVSGRAPKGIDEFLEIIDEAALHIATTGPADLLRLLLDRSGYLAELEEERSIEAEGRLENLTELIGGAEDFESVEEFLEQVSLVADTDDLDDDESSVVLMTLHSAKGLEFPVVFMIGLEDGVFPHMRSLGEPRELEEERRLAYVGITRARERLSISHAWSRMLHGMTQYNPPSRFLDEIP 627
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A7X6NZ18_9ACTN (ATP-dependent DNA helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NZ18_9ACTN)

HSP 1 Score: 388 bits (997), Expect = 5.470e-127
Identity = 189/283 (66.78%), Postives = 242/283 (85.51%), Query Frame = 1 
Query:   10 VRYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRK-LDAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIPA 855
            +RY ++A+FYR NAQSRV+EE L R GIPYKV+GGTRFYDRRE+KDA+AYLRA +NP+DEVSVKRV+NVPKRG+G+SS+G++DA+A +   +F  A++    AGV+GRA  GL+ F  +  + R  LD  PA ++E+ L+ SGY+EEL AER++E+EGRLENL+ELVG+ARE+ T+DEFLEQ+SLV+D+D   D+ESTVTLMTLH+AKGLEYP VF+IGMEDG+FP +RSL EPH++EEERRLAYVGITRA ++L+L+SA +RMLHGTTQYNPPSRFLDEIP+
Sbjct:  347 IRYGDVAIFYRTNAQSRVVEEGLFRAGIPYKVIGGTRFYDRREVKDALAYLRAAINPSDEVSVKRVMNVPKRGIGESSVGRIDAYARSNAVTFYDALLDAPAAGVSGRAITGLQTFHKIIEDARLILDKSPADVLEQLLEASGYIEELAAERTIESEGRLENLAELVGVAREFSTIDEFLEQVSLVSDSDQIGDDESTVTLMTLHAAKGLEYPVVFLIGMEDGIFPSMRSLDEPHQVEEERRLAYVGITRARERLYLSSANARMLHGTTQYNPPSRFLDEIPS 629
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BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: UPI001AA0799E (DNA helicase PcrA n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0799E)

HSP 1 Score: 387 bits (995), Expect = 7.570e-127
Identity = 194/283 (68.55%), Postives = 238/283 (84.10%), Query Frame = 1 
Query:    7 QVRYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKL-DAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            Q R+ ++AVFYR NAQSRV+EE L+RVGIPYKVVGGTRFYDRRE+KDA+AYLRA VNP DEVS+KRV+N PKRGVG+S++ +LD WA+A G  F  A+ R  +AGV+GRA  G+E FL L  ++ ++   GP  ++E A+ RSGY+ EL+AE S+EAEGRLENL+ELVG ARE+E+VDEFLEQISLV DTD+  D++S+V LMTLHSAKGLEYP VF+IG+EDGVFPH+RS+GEP +LEEERRL YVGITRAM++L+LT A SR L+G TQYNPPSRFLDEIP
Sbjct:  364 QYRWGDLAVFYRTNAQSRVVEEHLMRVGIPYKVVGGTRFYDRREVKDALAYLRAAVNPLDEVSIKRVLNTPKRGVGESTVARLDVWANARGLPFIDALRRAADAGVSGRAGRGIEAFLALVDDLAEMVPQGPGPLLEAAVTRSGYVAELEAEHSIEAEGRLENLAELVGAAREFESVDEFLEQISLVADTDELDDDDSSVVLMTLHSAKGLEYPVVFLIGLEDGVFPHLRSIGEPDQLEEERRLCYVGITRAMERLYLTHAWSRTLYGGTQYNPPSRFLDEIP 646
[Close]
BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A7X7HUC0_9ACTN (ATP-dependent DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HUC0_9ACTN)

HSP 1 Score: 387 bits (994), Expect = 9.380e-127
Identity = 194/280 (69.29%), Postives = 236/280 (84.29%), Query Frame = 1 
Query:   16 YDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKL-DAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            + ++AVFYR NAQSRV+EE LLR GIPYKVVGGTRFYDRRE+KDA++YL+A+VNP DEV+VKRV+NVPKRG+GDS++G+LDAWA+  G SF QAV R DEAG++GRA  G+E FL L   +  + + GPA ++E  L+ SGY  ELQAE SVEAEGRLENL+ELVG ARE E+VD+FLEQ+SLV D+D   D++S V LMTLHSAKGLE+P VF+IG+EDGVFPH+RSL EPHELEEERRLAYVGITRA ++L+L+ A SR + G+TQYNPPSRFLDEIP
Sbjct:  352 WGDVAVFYRTNAQSRVVEEHLLRAGIPYKVVGGTRFYDRREVKDALSYLKAVVNPADEVAVKRVLNVPKRGIGDSTVGRLDAWAAMNGLSFMQAVRRHDEAGISGRAVKGIEAFLKLIDSVETMVEQGPAPMLEALLEHSGYAAELQAEHSVEAEGRLENLAELVGSAREAESVDQFLEQVSLVADSDQIPDDDSQVVLMTLHSAKGLEFPAVFLIGLEDGVFPHLRSLTEPHELEEERRLAYVGITRARERLYLSHAWSRTIFGSTQYNPPSRFLDEIP 631
[Close]
BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A7V8WY06_9ACTN (ATP-dependent DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WY06_9ACTN)

HSP 1 Score: 386 bits (992), Expect = 2.020e-126
Identity = 199/287 (69.34%), Postives = 238/287 (82.93%), Query Frame = 1 
Query:    1 NEQVRYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKLDA-GPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEES-TVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIPA 855
            +E  R+ + AVFYR NAQ RV+EE LLR GIPYKVVGGTRFYDRRE+KDA+AYL+A+VNP DEVSVKRV+NVPKRG+GDSSIG+LDAW++A G  F +A+    EAGVTGRA  G++ FL L   +  L A GP  ++E ALDRSGYL ELQ E SVEAEGRLENL+EL+G ARE+E VD FLEQ+SLV DTDD  D++S +V LMTLH+AKGLE+P VFI+G+EDGVFPH+R+LG+P ELEEERRL YVGITRA ++L+LT+A SR L G+TQYNPPSRFLDEIPA
Sbjct:  362 DEAERWSDCAVFYRTNAQGRVMEEALLRSGIPYKVVGGTRFYDRREVKDALAYLKAVVNPVDEVSVKRVLNVPKRGIGDSSIGRLDAWSTAKGIPFVEALREAPEAGVTGRAIKGIDDFLHLLDRLTDLVADGPGPVLEAALDRSGYLAELQVEHSVEAEGRLENLAELIGFAREFEAVDAFLEQVSLVADTDDLPDDDSGSVVLMTLHAAKGLEFPNVFILGLEDGVFPHLRALGDPAELEEERRLCYVGITRARERLYLTNAWSRTLFGSTQYNPPSRFLDEIPA 648
[Close]
BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Match: A0A5Q2RUM2_9ACTN (DNA helicase n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RUM2_9ACTN)

HSP 1 Score: 377 bits (968), Expect = 1.540e-123
Identity = 194/282 (68.79%), Postives = 236/282 (83.69%), Query Frame = 1 
Query:   13 RYDEMAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIVNPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGVTGRAAAGLEKFLVLTTEIRKL-DAGPATIIEEALDRSGYLEELQAERSVEAEGRLENLSELVGMAREYETVDEFLEQISLVTDTDDA-ADEESTVTLMTLHSAKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLHLTSARSRMLHGTTQYNPPSRFLDEIP 852
            ++ ++AVFYR NAQSRVLEE L+RVGIPY V+GGTRFYDRRE+KDA+AYLRA+VNP DEVS+KRV+NVPKRG+GDS+IGKLD +A+A G +F  A+ R D+AGVTGRA  G++ FL L  E+  L   GPA ++E   +R+GY  EL+AE SVEA+GRLENL+ELVG+ARE E+VD FLEQ+SLV DTD   +D+ S+V LMTLHSAKGLE+P VF+IG+EDGVFPH+RS+GEP +LEEERRLAYVGITRA QKL+LT A  R L G+TQYNPPSRFLDEIP
Sbjct:  302 QWGDVAVFYRTNAQSRVLEERLMRVGIPYVVIGGTRFYDRREVKDALAYLRAVVNPVDEVSMKRVLNVPKRGIGDSTIGKLDVYANAHGIAFVDALRRADDAGVTGRAVKGIQSFLDLLDELEDLRPKGPAALLEAVFERTGYTSELEAEHSVEADGRLENLAELVGVAREAESVDAFLEQVSLVADTDALNSDDSSSVVLMTLHSAKGLEFPAVFLIGLEDGVFPHLRSIGEPDQLEEERRLAYVGITRARQKLYLTHAWCRTLFGSTQYNPPSRFLDEIP 583
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85873.20019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LVA8_9ACTN5.370e-16183.51ATP-dependent DNA helicase n=4 Tax=Acidimicrobiace... [more]
A0A6B1B0P9_9ACTN8.910e-14477.11ATP-dependent DNA helicase n=2 Tax=Acidimicrobiace... [more]
A0A3M2HB27_ACTSX1.270e-13471.38ATP-dependent DNA helicase (Fragment) n=1 Tax=Acti... [more]
A0A7Y2DDP0_9ACTN3.340e-13170.11ATP-dependent DNA helicase n=1 Tax=Acidimicrobiale... [more]
A0A520XZH8_9ACTN1.660e-12868.79ATP-dependent DNA helicase n=1 Tax=Acidimicrobiale... [more]
A0A7X6NZ18_9ACTN5.470e-12766.78ATP-dependent DNA helicase n=1 Tax=Actinomycetia b... [more]
UPI001AA0799E7.570e-12768.55DNA helicase PcrA n=1 Tax=Rhabdothermincola sedimi... [more]
A0A7X7HUC0_9ACTN9.380e-12769.29ATP-dependent DNA helicase n=1 Tax=Acidimicrobiale... [more]
A0A7V8WY06_9ACTN2.020e-12669.34ATP-dependent DNA helicase n=1 Tax=Acidimicrobiia ... [more]
A0A5Q2RUM2_9ACTN1.540e-12368.79DNA helicase n=2 Tax=Actinomarinicola tropica TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85873contigM-pyrifera_M_contig85873:2..856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score356.7
Seed ortholog evalue9.9e-96
Seed eggNOG ortholog1229780.BN381_130048
Preferred namepcrA
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000166,GO:0000287,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009892,GO:0009987,GO:0010605,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0030312,GO:0030554,GO:0031323,GO:0031324,GO:0032392,GO:0032508,GO:0032552,GO:0032554,GO:0032558,GO:0032564,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0036094,GO:0040007,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045910,GO:0045934,GO:0046483,GO:0046872,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0060542,GO:0060543,GO:0065007,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902494
EggNOG free text desc.UvrD-like helicase C-terminal domain
EggNOG OGs2GISS@201174,3UWC5@52018,COG0210@1,COG0210@2
EC3.6.4.12
COG Functional cat.L
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size855
Cds size831
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.8024733-CDS-M-pyrifera_M_contig85873:1..8321622816768.8024733-CDS-M-pyrifera_M_contig85873:1..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85873 2..832 -
1692278167.2515059-CDS-M-pyrifera_M_contig85873:1..8321692278167.2515059-CDS-M-pyrifera_M_contig85873:1..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85873 2..832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.8163912-UTR-M-pyrifera_M_contig85873:832..8561622816768.8163912-UTR-M-pyrifera_M_contig85873:832..856Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85873 833..856 -
1692278167.2734323-UTR-M-pyrifera_M_contig85873:832..8561692278167.2734323-UTR-M-pyrifera_M_contig85873:832..856Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85873 833..856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85873.20019.1prot_M-pyrifera_M_contig85873.20019.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85873 2..832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85873.20019.1

>prot_M-pyrifera_M_contig85873.20019.1 ID=prot_M-pyrifera_M_contig85873.20019.1|Name=mRNA_M-pyrifera_M_contig85873.20019.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=277bp
MAVFYRANAQSRVLEEFLLRVGIPYKVVGGTRFYDRREIKDAIAYLRAIV
NPTDEVSVKRVVNVPKRGVGDSSIGKLDAWASATGESFDQAVVRFDEAGV
TGRAAAGLEKFLVLTTEIRKLDAGPATIIEEALDRSGYLEELQAERSVEA
EGRLENLSELVGMAREYETVDEFLEQISLVTDTDDAADEESTVTLMTLHS
AKGLEYPYVFIIGMEDGVFPHIRSLGEPHELEEERRLAYVGITRAMQKLH
LTSARSRMLHGTTQYNPPSRFLDEIPA
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mRNA from alignment at M-pyrifera_M_contig85873:2..856-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85873.20019.1 ID=mRNA_M-pyrifera_M_contig85873.20019.1|Name=mRNA_M-pyrifera_M_contig85873.20019.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=855bp|location=Sequence derived from alignment at M-pyrifera_M_contig85873:2..856- (Macrocystis pyrifera P11B4 male)
AACGAGCAGGTCCGCTACGACGAGATGGCGGTGTTCTACCGGGCCAACGC
CCAGTCGCGGGTGCTCGAAGAGTTCCTGCTCCGGGTCGGCATCCCCTACA
AGGTCGTGGGGGGCACCCGCTTCTACGACCGGCGCGAGATCAAGGATGCG
ATCGCCTATCTCCGGGCCATCGTCAACCCGACCGACGAGGTGTCGGTCAA
GCGGGTGGTCAATGTTCCGAAGCGCGGGGTCGGCGACTCCTCGATCGGCA
AGCTCGACGCGTGGGCTTCGGCCACCGGCGAGTCGTTCGACCAGGCAGTG
GTGCGTTTCGACGAGGCCGGTGTCACCGGCCGGGCCGCCGCGGGGCTCGA
GAAGTTCCTCGTCCTCACCACCGAGATCCGCAAGCTCGACGCCGGTCCGG
CGACGATCATCGAGGAAGCGCTCGACCGGTCCGGCTATCTCGAGGAGCTC
CAGGCCGAGCGCTCGGTCGAAGCCGAGGGGCGGCTCGAGAACCTCTCCGA
GCTCGTGGGCATGGCCCGGGAGTACGAGACCGTCGACGAGTTCCTCGAAC
AGATCTCTCTCGTGACCGACACCGACGATGCCGCCGACGAGGAGTCCACC
GTCACCCTCATGACGCTGCACTCGGCGAAGGGTCTCGAATACCCCTACGT
GTTCATCATCGGCATGGAGGACGGGGTCTTCCCCCACATCCGGTCGCTCG
GCGAACCCCACGAACTCGAAGAGGAGCGCCGGCTCGCCTATGTGGGGATC
ACCCGGGCGATGCAGAAGCTCCACCTCACCAGCGCGCGGAGCCGCATGCT
CCACGGGACGACGCAATACAACCCGCCGAGCCGGTTCCTCGACGAGATCC
CGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85873:2..856-

>mRNA_M-pyrifera_M_contig85873.20019.1 ID=mRNA_M-pyrifera_M_contig85873.20019.1|Name=mRNA_M-pyrifera_M_contig85873.20019.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1662bp|location=Sequence derived from alignment at M-pyrifera_M_contig85873:2..856- (Macrocystis pyrifera P11B4 male)
ATGGCGGTGTTCTACCGGGCCAACGCCCAGTCGCGGGTGCTCGAAGAGTT
CCTGCTCCGGGTCGGCATCCCCTACAAGGTCGTGGGGGGCACCCGCTTCT
ACGACCGGCGCGAGATCAAGGATGCGATCGCCTATCTCCGGGCCATCGTC
AACCCGACCGACGAGGTGTCGGTCAAGCGGGTGGTCAATGTTCCGAAGCG
CGGGGTCGGCGACTCCTCGATCGGCAAGCTCGACGCGTGGGCTTCGGCCA
CCGGCGAGTCGTTCGACCAGGCAGTGGTGCGTTTCGACGAGGCCGGTGTC
ACCGGCCGGGCCGCCGCGGGGCTCGAGAAGTTCCTCGTCCTCACCACCGA
GATCCGCAAGCTCGACGCCGGTCCGGCGACGATCATCGAGGAAGCGCTCG
ACCGGTCCGGCTATCTCGAGGAGCTCCAGGCCGAGCGCTCGGTCGAAGCC
GAGGGGCGGCTCGAGAACCTCTCCGAGCTCGTGGGCATGGCCCGGGAGTA
CGAGACCGTCGACGAGTTCCTCGAACAGATCTCTCTCGTGACCGACACCG
ACGATGCCGCCGACGAGGAGTCCACCGTCACCCTCATGACGCTGCACTCG
GCGAAGGGTCTCGAATACCCCTACGTGTTCATCATCGGCATGGAGGACGG
GGTCTTCCCCCACATCCGGTCGCTCGGCGAACCCCACGAACTCGAAGAGG
AGCGCCGGCTCGCCTATGTGGGGATCACCCGGGCGATGCAGAAGCTCCAC
CTCACCAGCGCGCGGAGCCGCATGCTCCACGGGACGACGCAATACAACCC
GCCGAGCCGGTTCCTCGACGAGATCCCGGCCATGGCGGTGTTCTACCGGG
CCAACGCCCAGTCGCGGGTGCTCGAAGAGTTCCTGCTCCGGGTCGGCATC
CCCTACAAGGTCGTGGGGGGCACCCGCTTCTACGACCGGCGCGAGATCAA
GGATGCGATCGCCTATCTCCGGGCCATCGTCAACCCGACCGACGAGGTGT
CGGTCAAGCGGGTGGTCAATGTTCCGAAGCGCGGGGTCGGCGACTCCTCG
ATCGGCAAGCTCGACGCGTGGGCTTCGGCCACCGGCGAGTCGTTCGACCA
GGCAGTGGTGCGTTTCGACGAGGCCGGTGTCACCGGCCGGGCCGCCGCGG
GGCTCGAGAAGTTCCTCGTCCTCACCACCGAGATCCGCAAGCTCGACGCC
GGTCCGGCGACGATCATCGAGGAAGCGCTCGACCGGTCCGGCTATCTCGA
GGAGCTCCAGGCCGAGCGCTCGGTCGAAGCCGAGGGGCGGCTCGAGAACC
TCTCCGAGCTCGTGGGCATGGCCCGGGAGTACGAGACCGTCGACGAGTTC
CTCGAACAGATCTCTCTCGTGACCGACACCGACGATGCCGCCGACGAGGA
GTCCACCGTCACCCTCATGACGCTGCACTCGGCGAAGGGTCTCGAATACC
CCTACGTGTTCATCATCGGCATGGAGGACGGGGTCTTCCCCCACATCCGG
TCGCTCGGCGAACCCCACGAACTCGAAGAGGAGCGCCGGCTCGCCTATGT
GGGGATCACCCGGGCGATGCAGAAGCTCCACCTCACCAGCGCGCGGAGCC
GCATGCTCCACGGGACGACGCAATACAACCCGCCGAGCCGGTTCCTCGAC
GAGATCCCGGCC
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