mRNA_M-pyrifera_M_contig85868.20017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85868.20017.1
Unique NamemRNA_M-pyrifera_M_contig85868.20017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Match: A0A812LQD8_9DINO (CEP290 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812LQD8_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 2.680e-8
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  343 ARLREENAALQEELGAFDIEFFEELEDLKFRYAAAARKCAAFDAFLA 483
            A LR ENAAL+EELGAFD+ FFEELEDLK+R+  A  KCAAFD  LA
Sbjct: 2728 AALRAENAALKEELGAFDVGFFEELEDLKWRHGQAIDKCAAFDRLLA 2774
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BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Match: A0A7S3XY01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY01_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 1.560e-6
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  331 EKQMARLREENAALQEELGAFDIEFFEELEDLKFRYAAAARKCAAF 468
            E++ ARLREENA L  EL AFD++FFEE+EDLKF+YA A RK  A+
Sbjct:  225 EEENARLREENAKLARELQAFDLDFFEEIEDLKFKYAEAQRKLQAY 270
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BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Match: A0A7S2SBL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBL1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.030e-6
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:  337 QMARLREENAALQEELGAFDIEFFEELEDLKFRYAAAARKCAAFDA 474
            ++ RLR+ENA L++EL AFD++FFEE+EDLK++YA A +K   F+A
Sbjct:  683 ELTRLRDENAKLKQELSAFDLDFFEEIEDLKYKYAEAVKKLRQFEA 728
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BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Match: A0A3R6WL93_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WL93_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.180e-5
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  346 RLREENAALQEELGAFDIEFFEELEDLKFRYAAAARKCAAFDAFLA 483
            RLREENA L EEL AFD++FF+E+EDLKF+YA A R+  A +  LA
Sbjct: 1291 RLREENARLTEELSAFDLDFFDEIEDLKFKYAQAVRQKQALEKQLA 1336
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BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Match: A0A024TQ36_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQ36_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.220e-5
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  346 RLREENAALQEELGAFDIEFFEELEDLKFRYAAAARKCAAFDAFLA 483
            RLREENA L EEL AFD++FF+E+EDLKF+YA A R+  A +  LA
Sbjct: 1663 RLREENARLTEELSAFDLDFFDEIEDLKFKYAQAVRQKQALEKQLA 1708
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BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Match: A0A1V9ZW89_9STRA (Centrosome-associated protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW89_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.670e-5
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  256 VEAIEKEAKEAQEEVRRLKRALEDSEKQMARLREENAALQEELGAFDIEFFEELEDLKFRYAAAARK 456
            +EA+E+E           +  L   E+  A+L EENA L EEL AFD+EFFEE+EDLKF+YA A R+
Sbjct:  502 IEALERELSRKSPTTPANEEMLRKLEQHNAQLLEENAKLTEELSAFDLEFFEEIEDLKFKYAEAIRQ 568
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85868.20017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A812LQD8_9DINO2.680e-872.34CEP290 protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]
A0A7S3XY01_HETAK1.560e-665.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SBL1_9STRA6.030e-656.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A3R6WL93_9STRA2.180e-563.04Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024TQ36_9STRA2.220e-563.04Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9ZW89_9STRA2.670e-549.25Centrosome-associated protein n=1 Tax=Thraustothec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85868contigM-pyrifera_M_contig85868:258..740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.734525-CDS-M-pyrifera_M_contig85868:257..7401622816768.734525-CDS-M-pyrifera_M_contig85868:257..740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85868 258..740 -
1692278167.2221398-CDS-M-pyrifera_M_contig85868:257..7401692278167.2221398-CDS-M-pyrifera_M_contig85868:257..740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85868 258..740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85868.20017.1prot_M-pyrifera_M_contig85868.20017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85868 258..740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85868.20017.1

>prot_M-pyrifera_M_contig85868.20017.1 ID=prot_M-pyrifera_M_contig85868.20017.1|Name=mRNA_M-pyrifera_M_contig85868.20017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
EAAEEAASKLREAERKAESEGREAASLRRALHQAQQAARKAERRIKEMEK
KVGEKEDEEDEGEKEGESGGGGEVERGGGKSDAVEVEAIEKEAKEAQEEV
RRLKRALEDSEKQMARLREENAALQEELGAFDIEFFEELEDLKFRYAAAA
RKCAAFDAFLA
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mRNA from alignment at M-pyrifera_M_contig85868:258..740-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85868.20017.1 ID=mRNA_M-pyrifera_M_contig85868.20017.1|Name=mRNA_M-pyrifera_M_contig85868.20017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig85868:258..740- (Macrocystis pyrifera P11B4 male)
GAAGCTGCAGAGGAAGCAGCTTCCAAGCTTCGAGAAGCAGAACGTAAAGC
AGAATCAGAAGGTCGTGAAGCTGCATCATTGCGTCGTGCATTGCACCAAG
CACAACAAGCGGCAAGGAAAGCAGAACGAAGAATCAAAGAGATGGAAAAG
AAGGTGGGGGAAAAGGAGGATGAAGAGGACGAGGGGGAGAAGGAGGGAGA
GAGTGGAGGTGGTGGGGAAGTGGAGAGAGGTGGGGGAAAGAGTGATGCTG
TGGAAGTTGAAGCGATTGAAAAAGAAGCAAAGGAAGCACAAGAAGAAGTG
AGACGATTGAAGAGAGCGTTGGAAGACTCTGAAAAGCAAATGGCTCGATT
GCGTGAAGAAAATGCTGCACTGCAAGAAGAACTTGGAGCATTTGATATTG
AATTCTTCGAAGAACTTGAAGATCTCAAGTTTAGATATGCAGCAGCCGCA
CGAAAGTGTGCAGCATTCGATGCTTTCCTAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85868:258..740-

>mRNA_M-pyrifera_M_contig85868.20017.1 ID=mRNA_M-pyrifera_M_contig85868.20017.1|Name=mRNA_M-pyrifera_M_contig85868.20017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig85868:258..740- (Macrocystis pyrifera P11B4 male)
GAAGCTGCAGAGGAAGCAGCTTCCAAGCTTCGAGAAGCAGAACGTAAAGC
AGAATCAGAAGGTCGTGAAGCTGCATCATTGCGTCGTGCATTGCACCAAG
CACAACAAGCGGCAAGGAAAGCAGAACGAAGAATCAAAGAGATGGAAAAG
AAGGTGGGGGAAAAGGAGGATGAAGAGGACGAGGGGGAGAAGGAGGGAGA
GAGTGGAGGTGGTGGGGAAGTGGAGAGAGGTGGGGGAAAGAGTGATGCTG
TGGAAGTTGAAGCGATTGAAAAAGAAGCAAAGGAAGCACAAGAAGAAGTG
AGACGATTGAAGAGAGCGTTGGAAGACTCTGAAAAGCAAATGGCTCGATT
GCGTGAAGAAAATGCTGCACTGCAAGAAGAACTTGGAGCATTTGATATTG
AATTCTTCGAAGAACTTGAAGATCTCAAGTTTAGATATGCAGCAGCCGCA
CGAAAGTGTGCAGCATTCGATGCTTTCCTAGCAGAAGCTGCAGAGGAAGC
AGCTTCCAAGCTTCGAGAAGCAGAACGTAAAGCAGAATCAGAAGGTCGTG
AAGCTGCATCATTGCGTCGTGCATTGCACCAAGCACAACAAGCGGCAAGG
AAAGCAGAACGAAGAATCAAAGAGATGGAAAAGAAGGTGGGGGAAAAGGA
GGATGAAGAGGACGAGGGGGAGAAGGAGGGAGAGAGTGGAGGTGGTGGGG
AAGTGGAGAGAGGTGGGGGAAAGAGTGATGCTGTGGAAGTTGAAGCGATT
GAAAAAGAAGCAAAGGAAGCACAAGAAGAAGTGAGACGATTGAAGAGAGC
GTTGGAAGACTCTGAAAAGCAAATGGCTCGATTGCGTGAAGAAAATGCTG
CACTGCAAGAAGAACTTGGAGCATTTGATATTGAATTCTTCGAAGAACTT
GAAGATCTCAAGTTTAGATATGCAGCAGCCGCACGAAAGTGTGCAGCATT
CGATGCTTTCCTAGCA
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