mRNA_M-pyrifera_M_contig8583.20011.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8583.20011.1
Unique NamemRNA_M-pyrifera_M_contig8583.20011.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8583.20011.1 vs. uniprot
Match: D7G1G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G0_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 2.060e-68
Identity = 127/197 (64.47%), Postives = 148/197 (75.13%), Query Frame = 1 
Query:  121 DEADALQGLVRVAFSGLQPGDRQAATSMVRSLSKGRKPSGSGVCSSDREAFTHLVIPDVSRRTLKVLFALCAPTSANQRPPVVVTVQWLYASLEKGYFVDAEAYRPSRYRGP---------PERGGAGEP-----DACAISARLLTGERVMVGGVADPPSKVVENLAMAAGAEIANSLEDATLLLVESEPQLEVRVQ 669
            + +D LQG+VRV FSGLQPGDRQAA S+VRSLSK  +P GSGVC SD EA+THLVIPDVSRRTLKVLFALCAP S N RPPVVVTV WLY SLEKG+FVD+EA+RP RYRGP         PE GG+        ++ +IS+ LL GERVM+GG+ADPP  VVE LA+A G +I + L DATLLL E+E  LE  V+
Sbjct: 1594 ERSDKLQGVVRVVFSGLQPGDRQAAASVVRSLSKTHRPHGSGVCMSDAEAYTHLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLYESLEKGFFVDSEAFRPDRYRGPALEGGSVEGPEEGGSATAAGATKESRSISSSLLQGERVMLGGIADPPPSVVETLALATGGQITHCLHDATLLLAETETALEAWVE 1790
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BLAST of mRNA_M-pyrifera_M_contig8583.20011.1 vs. uniprot
Match: A0A6H5JHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC6_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 1.380e-65
Identity = 123/194 (63.40%), Postives = 145/194 (74.74%), Query Frame = 1 
Query:  130 DALQGLVRVAFSGLQPGDRQAATSMVRSLSKGRKPSGSGVCSSDREAFTHLVIPDVSRRTLKVLFALCAPTSANQRPPVVVTVQWLYASLEKGYFVDAEAYRPSRYRGPPERGGAGE--------------PDACAISARLLTGERVMVGGVADPPSKVVENLAMAAGAEIANSLEDATLLLVESEPQLEVRVQ 669
            D LQG+VRVAFSG+QPGDRQAA S+VRSLS+  +P GSGVC+SD EA+THLVIPDVSRRTLKVLFALCAP S N RPPVVVTV WLY SLEKG+FVD+EA+RP RYRG    GG+ E               ++ +IS+ LL GERVM+GG+ DPP  VVENLA+A G  I + + DATLLL E+E  LE  V+
Sbjct: 1847 DKLQGVVRVAFSGMQPGDRQAAASVVRSLSRTHRPHGSGVCTSDAEAYTHLVIPDVSRRTLKVLFALCAPLSPNGRPPVVVTVAWLYESLEKGFFVDSEAFRPDRYRGLALEGGSVEGPEEGVSATAAGATKESRSISSNLLQGERVMLGGIVDPPPSVVENLAVATGGLITHCIHDATLLLAETEIALEAWVE 2040
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8583.20011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1G0_ECTSI2.060e-6864.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHC6_9PHAE1.380e-6563.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8583contigM-pyrifera_M_contig8583:826..4363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size669
Cds size669
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8583.20011.1prot_M-pyrifera_M_contig8583.20011.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8583 826..4363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.4724858-CDS-M-pyrifera_M_contig8583:825..8971622816768.4724858-CDS-M-pyrifera_M_contig8583:825..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 826..897 -
1692278167.0660648-CDS-M-pyrifera_M_contig8583:825..8971692278167.0660648-CDS-M-pyrifera_M_contig8583:825..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 826..897 -
1622816768.4862638-CDS-M-pyrifera_M_contig8583:1071..12251622816768.4862638-CDS-M-pyrifera_M_contig8583:1071..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 1072..1225 -
1692278167.0779586-CDS-M-pyrifera_M_contig8583:1071..12251692278167.0779586-CDS-M-pyrifera_M_contig8583:1071..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 1072..1225 -
1622816768.4974384-CDS-M-pyrifera_M_contig8583:2179..23071622816768.4974384-CDS-M-pyrifera_M_contig8583:2179..2307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 2180..2307 -
1692278167.0901172-CDS-M-pyrifera_M_contig8583:2179..23071692278167.0901172-CDS-M-pyrifera_M_contig8583:2179..2307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 2180..2307 -
1622816768.50954-CDS-M-pyrifera_M_contig8583:3327..34531622816768.50954-CDS-M-pyrifera_M_contig8583:3327..3453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 3328..3453 -
1692278167.0998592-CDS-M-pyrifera_M_contig8583:3327..34531692278167.0998592-CDS-M-pyrifera_M_contig8583:3327..3453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 3328..3453 -
1622816768.5221953-CDS-M-pyrifera_M_contig8583:4174..43631622816768.5221953-CDS-M-pyrifera_M_contig8583:4174..4363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 4175..4363 -
1692278167.1094723-CDS-M-pyrifera_M_contig8583:4174..43631692278167.1094723-CDS-M-pyrifera_M_contig8583:4174..4363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8583 4175..4363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8583.20011.1

>prot_M-pyrifera_M_contig8583.20011.1 ID=prot_M-pyrifera_M_contig8583.20011.1|Name=mRNA_M-pyrifera_M_contig8583.20011.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=223bp
GGGSSSAGVGRGEKGKRAASGSGGGGGTGAGKRKRGGGGGDEADALQGLV
RVAFSGLQPGDRQAATSMVRSLSKGRKPSGSGVCSSDREAFTHLVIPDVS
RRTLKVLFALCAPTSANQRPPVVVTVQWLYASLEKGYFVDAEAYRPSRYR
GPPERGGAGEPDACAISARLLTGERVMVGGVADPPSKVVENLAMAAGAEI
ANSLEDATLLLVESEPQLEVRVQ
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mRNA from alignment at M-pyrifera_M_contig8583:826..4363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8583.20011.1 ID=mRNA_M-pyrifera_M_contig8583.20011.1|Name=mRNA_M-pyrifera_M_contig8583.20011.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3538bp|location=Sequence derived from alignment at M-pyrifera_M_contig8583:826..4363- (Macrocystis pyrifera P11B4 male)
GGTGGGGGCTCTTCTTCTGCGGGAGTGGGCAGGGGCGAGAAGGGGAAGCG
CGCTGCCAGTGGCAGTGGTGGCGGCGGCGGGACGGGGGCGGGAAAGAGGA
AGAGGGGGGGTGGGGGTGGTGATGAGGCGGATGCGCTGCAGGGCCTGGTG
CGGGTTGCGTTTTCGGGCTTGCAGCCCGGCGATCGGCAGGTGGGCGGCGG
GCGTGCGTGTGGCATGCACGTTTTTTTTGTCGTGGCGCGATCGATCGGTC
GGGTTCGTGCGCGCTTGCAAAATTTGCTGTTGATGCAAGACCTGGGATTT
GCCCCTTTTGGATTGGCCGCCCCGCTATGCGCTAAAGAGGAGACGTACGT
ACGAGGGCTGCAACGGGCCTCAACGCGCCCGCGAAGACGCTCCTTGTACC
CGCGTCCCTCGTGGTTCCGTGCTTGTGCTGGTAAATTCAACGGGTTCGAA
TCGTTCACACATACAGGCCAGACTTCGTTCCACCCCACTTTCGTGACCCT
AGACGTTTTAGAGAATGTGAGCTTCTGGTCTGTAACACTCTGGACGTGGA
TAGAAGGACCGCTTGGTCTCCACTTTTAGGTCTGAAATCCCCCTTTTTAT
TTTTTCGCTCAGAGCGGTATATGGTTTTGGTCAAGTTACCGGGCCGGAGT
CGTTTGGTTTTGCATGATCTGTGTAGGGCATGATTCCTGGGGGATTGGAT
ATGGAATTATACATCTTGCACGATATGTCGTGACGGAAGGTTAGGAACTA
GATCTATCTGCAGATGATCTATCTACCTGTAGGTCGTGCTCTGTCTGCCC
GATGTAGTCAAAATGTCGTTTGTGTCGCATCTGCTGTGTAGCCATCATGC
CACATTTTTCCAACTTTTTGGGTCTCGTTATCGCTCGGGGGGTTTCACCA
ACTTGGGCAGGCGGCGACAAGCATGGTGCGGTCTCTCTCTAAGGGCCGGA
AGCCGTCGGGAAGCGGGGTTTGCTCCTCGGACCGCGAGGCTTTCACCCAC
CTCGTCATCCCGGATGTTTCGCGCAGAACGCTCAAGGTAAAAAAAAAAAA
TGAACTTGCTATCGTTAATAACCGCTCTTAAGGCACAATACAGTCCCGTT
TTCTGGACAAAACCGCTCAAATTCTCTAAAAAGTTTGTCCCCAAAAAACT
GGACTTCGTTCCCGAAAGGGTCCAAACAAGGCGGTTATTTCTATTACGGG
GGTCCACAGTTAATAGGACCTATGGTATACATAAAAAACCTATATATTTA
CCTATTTTGACTAACATTGTTTGGTCCTATATACTGTGGTCCCCCGTAAT
AATTGGTTCACGGGTCGGGTCAAATCTCGCGGGTCAGGTCGGATCGGGTC
GCGGGCAACGGTGACCGGACCCGATCGGTGAAAATTTGAAAACCTCTTGA
CCCGACCCGACCCGATCCGGCCTTATCCGACCCGACCCGACAACCCGACC
CGACCCAGCCCGTGAGACTTCGAAAACTTCCTGACCCGACCCGCGGGTTG
AAGTTGTGACCCGTGAAGAACCCTGTTTATTTGTAATTGGTTTGGATGTT
CCCCGAACGCCTTTTCTGCTAGGCCGCCTGCCGCCGAGGGTTTTTGTTTT
CGGGATCATCACACGTCGGACAGGTCTTCCGTAGATCTAGATATAACTTC
GGCTCAGGTAGATGCCTGATCTGTATGGTCTGTATGAACCGTTAAGGGGG
GACCGTAGTAAATAGGACCAAATATTTGTTTATAAAAATTGGGAAATATA
TAGGTTTTTGTGTGTACCGTAGGTCCTCTTTAGTATGGCCCTCCGTAGTG
GCTCATGTTGCCACGTAGGAGCCGGGTAGGACATGTTTCCTCGGGTAAAT
CTGTACTGTACACAGATAGATCCTCCACAACCGCTCACAGCGGCAGGAGA
GAAACTAGATCATCTAGATCATGATCTATCTGACCGGGGGGTGTATGCGG
ATTCTTTCTCAACCCTCCACTCCCCCCCCTCCCCCCCCCCTCTCCACACA
CACACATTTTTTCCCCGTCTCGTCTTTTGTCGTCGTTTTGTTTTCGGCGC
CAACAGGTCCTTTTCGCGCTCTGTGCCCCGACCTCGGCCAATCAGCGGCC
TCCCGTTGTCGTTACGGTCCAATGGCTCTATGCGTCGCTGGAGAAGGGTT
ACTTCGTGGATGCTGAGGCGTATCGCCCTAGCAGGTGAGCTGGTGGAGGG
GGGGGGGCAGGAGGTAGAGGGGCTATGCAGGAGGGGAGGGAAGGGGAGGG
GAGGGGCGTTGTCTTGTTGGTTGGGGCTGGGGGGGGTGGGAGGGGGGGGC
TGTACTGTTTTCGCTCATGGTCGTAGTGGCACGGCCATAGGCGCTAGCAC
CCCTATATACAATGCCGGGACAGTAGCACGTCGGGTTTTCACTGACCAGG
AGGGCGTTTATATGCTTGTACCAAGCGCGCAGCGAGACGTGGGTCATTGG
GTGATGGAAAATATCTGGACGATATCTCCCCAGAGCCGCCGTTTTTACCG
TAGGGTGTTTGCGACAAGTCCCATTTGGTTGGGTTCTCGAAAAAAAAAAA
ATGAGCCAACAAAGATAACGAGGGGCTGTTCGACTAAGCCGGTTAGTCCG
AAAGCCCTACGTAGCCAGTCAGAAGCTGCTCCGTTTCCCGACCAACCCAA
CAGAGATATCCAATCAAGCCAACCCACGAATACTTGCTGTGGGCTAAAAA
AAGAAACGTCATTTTCGTGTCGCTGTTTTCCACAGCAATTGTTTTTTCCG
TGGGTTGGTATTTTGCTGCTACCGTAGCTATAATGCGGTGAGAAACAGAC
TACATTCCAAACTGGTACGAAATGAAAAAAGAAATAGTCGCAAGCACTGC
TGTGTTGTCGGCCCCCTGCCGCCCTTGCCTTCGCTACGAGCGGTGTGTGT
TGTACTGCGCGTAAATATAGTAATCGCTTTGTCTCGATATTGATGTGTGA
AAGCTCCTTATGTTTCCGGCCAGAGTGCTATATGGGTGTGGTCCCATCGG
ATAGGATGAGTCAGGAGGCGATTCACAGAGCCCTTACGTACACATCAGAA
CAGCCACCTCCCAATGCCATTTTTGTATGGCAAGGTTCTGCTGTTTTTAA
CGGAAAACGCCTCTCTGTTGTGTACCTCCCTCTGGTAGGTACCGTGGCCC
CCCCGAGAGGGGGGGGGCAGGAGAGCCCGATGCGTGCGCCATTTCTGCGC
GGCTGCTAACAGGGGAGCGGGTGATGGTCGGAGGCGTTGCTGATCCGCCT
TCCAAGGTGGTGGAAAACCTGGCTATGGCTGCCGGGGCCGAGGTACGAGC
CAAAGATATACTTGGAGTATGTATACTACTGTAGCAAATAGTAATAGGCA
ATACGCATTGGATGCGAAATGTACTATGGTTGGCTACTTTGGGAGTTGAG
GAGCCCCGCCCGAACTCATTACTTTGTTTTCCCGCTTTTTTCTTACTCCG
TATCTCGTCCAATCAGATCGCAAACTCGCTTGAGGACGCGACGCTGCTGT
TGGTGGAGTCCGAGCCCCAGCTAGAGGTGAGGGTACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8583:826..4363-

>mRNA_M-pyrifera_M_contig8583.20011.1 ID=mRNA_M-pyrifera_M_contig8583.20011.1|Name=mRNA_M-pyrifera_M_contig8583.20011.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1338bp|location=Sequence derived from alignment at M-pyrifera_M_contig8583:826..4363- (Macrocystis pyrifera P11B4 male)
GGTGGGGGCTCTTCTTCTGCGGGAGTGGGCAGGGGCGAGAAGGGGAAGCG
CGCTGCCAGTGGCAGTGGTGGCGGCGGCGGGACGGGGGCGGGAAAGAGGA
AGAGGGGGGGTGGGGGTGGTGATGAGGCGGATGCGCTGCAGGGCCTGGTG
CGGGTTGCGTTTTCGGGCTTGCAGCCCGGCGATCGGCAGGGTGGGGGCTC
TTCTTCTGCGGGAGTGGGCAGGGGCGAGAAGGGGAAGCGCGCTGCCAGTG
GCAGTGGTGGCGGCGGCGGGACGGGGGCGGGAAAGAGGAAGAGGGGGGGT
GGGGGTGGTGATGAGGCGGATGCGCTGCAGGGCCTGGTGCGGGTTGCGTT
TTCGGGCTTGCAGCCCGGCGATCGGCAGGCGGCGACAAGCATGGTGCGGT
CTCTCTCTAAGGGCCGGAAGCCGTCGGGAAGCGGGGTTTGCTCCTCGGAC
CGCGAGGCTTTCACCCACCTCGTCATCCCGGATGTTTCGCGCAGAACGCT
CAAGGCGGCGACAAGCATGGTGCGGTCTCTCTCTAAGGGCCGGAAGCCGT
CGGGAAGCGGGGTTTGCTCCTCGGACCGCGAGGCTTTCACCCACCTCGTC
ATCCCGGATGTTTCGCGCAGAACGCTCAAGGTCCTTTTCGCGCTCTGTGC
CCCGACCTCGGCCAATCAGCGGCCTCCCGTTGTCGTTACGGTCCAATGGC
TCTATGCGTCGCTGGAGAAGGGTTACTTCGTGGATGCTGAGGCGTATCGC
CCTAGCAGGTCCTTTTCGCGCTCTGTGCCCCGACCTCGGCCAATCAGCGG
CCTCCCGTTGTCGTTACGGTCCAATGGCTCTATGCGTCGCTGGAGAAGGG
TTACTTCGTGGATGCTGAGGCGTATCGCCCTAGCAGGTACCGTGGCCCCC
CCGAGAGGGGGGGGGCAGGAGAGCCCGATGCGTGCGCCATTTCTGCGCGG
CTGCTAACAGGGGAGCGGGTGATGGTCGGAGGCGTTGCTGATCCGCCTTC
CAAGGTGGTGGAAAACCTGGCTATGGCTGCCGGGGCCGAGGTACCGTGGC
CCCCCCGAGAGGGGGGGGGCAGGAGAGCCCGATGCGTGCGCCATTTCTGC
GCGGCTGCTAACAGGGGAGCGGGTGATGGTCGGAGGCGTTGCTGATCCGC
CTTCCAAGGTGGTGGAAAACCTGGCTATGGCTGCCGGGGCCGAGATCGCA
AACTCGCTTGAGGACGCGACGCTGCTGTTGGTGGAGTCCGAGCCCCAGCT
AGAGGTGAGGGTACAAATCGCAAACTCGCTTGAGGACGCGACGCTGCTGT
TGGTGGAGTCCGAGCCCCAGCTAGAGGTGAGGGTACAA
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