mRNA_M-pyrifera_M_contig85784.20002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85784.20002.1
Unique NamemRNA_M-pyrifera_M_contig85784.20002.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85784.20002.1 vs. uniprot
Match: D7FR05_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR05_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 9.260e-10
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:   10 EQVLAVFPDTTSFYRGTISKQPVRKAGLVSEV 105
            + VLAVFPDTTSFYRGTISKQPVRKAGLV+E+
Sbjct:  197 DDVLAVFPDTTSFYRGTISKQPVRKAGLVAEL 228
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85784.20002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR05_ECTSI9.260e-1087.50SGF29 C-terminal domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85784contigM-pyrifera_M_contig85784:544..657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7FR05
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.SGF29 tudor-like domain
EggNOG OGs2E9KP@1,2SFY2@2759
Ec32 ortholog descriptionSGF29 tudor-like domain protein
Ec32 orthologEc-09_003030.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.117416-CDS-M-pyrifera_M_contig85784:543..6571622816768.117416-CDS-M-pyrifera_M_contig85784:543..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85784 544..657 +
1692278166.885726-CDS-M-pyrifera_M_contig85784:543..6571692278166.885726-CDS-M-pyrifera_M_contig85784:543..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85784 544..657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85784.20002.1prot_M-pyrifera_M_contig85784.20002.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85784 544..657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85784.20002.1

>prot_M-pyrifera_M_contig85784.20002.1 ID=prot_M-pyrifera_M_contig85784.20002.1|Name=mRNA_M-pyrifera_M_contig85784.20002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
NNAEQVLAVFPDTTSFYRGTISKQPVRKAGLVSEVGL*
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mRNA from alignment at M-pyrifera_M_contig85784:544..657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85784.20002.1 ID=mRNA_M-pyrifera_M_contig85784.20002.1|Name=mRNA_M-pyrifera_M_contig85784.20002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig85784:544..657+ (Macrocystis pyrifera P11B4 male)
AATAATGCCGAGCAGGTTTTGGCAGTTTTTCCGGACACGACGAGTTTCTA
CCGGGGCACGATCAGCAAACAGCCGGTTCGCAAAGCGGGCCTTGTTTCTG
AGGTGGGTTTATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85784:544..657+

>mRNA_M-pyrifera_M_contig85784.20002.1 ID=mRNA_M-pyrifera_M_contig85784.20002.1|Name=mRNA_M-pyrifera_M_contig85784.20002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig85784:544..657+ (Macrocystis pyrifera P11B4 male)
AATAATGCCGAGCAGGTTTTGGCAGTTTTTCCGGACACGACGAGTTTCTA
CCGGGGCACGATCAGCAAACAGCCGGTTCGCAAAGCGGGCCTTGTTTCTG
AGGTGGGTTTATAGAATAATGCCGAGCAGGTTTTGGCAGTTTTTCCGGAC
ACGACGAGTTTCTACCGGGGCACGATCAGCAAACAGCCGGTTCGCAAAGC
GGGCCTTGTTTCTGAGGTGGGTTTATAG
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